Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGK	55750	hgsc.bcm.edu	37	7	141341644	141341644	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALPL	249	hgsc.bcm.edu	37	1	21887655	21887655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGEF17	9828	hgsc.bcm.edu	37	11	73021006	73021007	+	Frame_Shift_Del	DEL	CA	CA	-	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATR	545	hgsc.bcm.edu	37	3	142241591	142241591	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAI2	576	hgsc.bcm.edu	37	1	32193184	32193184	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C13orf27	93081	hgsc.bcm.edu	37	13	103418816	103418816	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1I	8911	hgsc.bcm.edu	37	22	40078528	40078528	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCT	1638	hgsc.bcm.edu	37	13	95121259	95121259	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF4E1B	253314	hgsc.bcm.edu	37	5	176070710	176070710	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRIN2B	2904	hgsc.bcm.edu	37	12	13716545	13716545	+	Silent	SNP	C	C	G	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HOXB1	3211	hgsc.bcm.edu	37	17	46608181	46608181	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LIN54	132660	hgsc.bcm.edu	37	4	83849392	83849392	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MSH3	4437	hgsc.bcm.edu	37	5	80074600	80074600	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF14	25832	hgsc.bcm.edu	37	1	148021592	148021592	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRG1	3084	hgsc.bcm.edu	37	8	32505779	32505779	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGC4	56098	hgsc.bcm.edu	37	5	140865595	140865595	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHA7	144100	hgsc.bcm.edu	37	11	16816509	16816509	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAB10	10890	hgsc.bcm.edu	37	2	26332677	26332677	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RALGAPB	57148	hgsc.bcm.edu	37	20	37150282	37150282	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RARB	5915	hgsc.bcm.edu	37	3	25470335	25470335	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC9A3	6550	hgsc.bcm.edu	37	5	485324	485324	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZCWPW1	55063	hgsc.bcm.edu	37	7	100004924	100004924	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4893-01A-01D-1373-10	TCGA-CJ-4893-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
