Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RERE	473	broad.mit.edu	36	1	8341536	8341536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	8341536	8341536	RERE	1	G	G	A	37
MOV10	4343	broad.mit.edu	36	1	113019167	113019167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	113019167	113019167	MOV10	1	C	C	G	18
PCDH15	65217	broad.mit.edu	36	10	55747164	55747164	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	55747164	55747164	PCDH15	10	G	G	T	36
MYOF	26509	broad.mit.edu	36	10	95106547	95106547	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	95106547	95106547	MYOF	10	T	T	C	52
CD163	9332	broad.mit.edu	36	12	7526584	7526584	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	7526584	7526584	CD163	12	G	G	C	35
A2ML1	144568	broad.mit.edu	36	12	8907744	8907744	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	8907744	8907744	A2ML1	12	C	C	G	17
KRT72	140807	broad.mit.edu	36	12	51267860	51267860	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	51267860	51267860	KRT72	12	C	C	T	22
SHC4	399694	broad.mit.edu	36	15	46922940	46922940	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Nonsense_Mutation	SNP	46922940	46922940	SHC4	15	G	G	A	45
TLN2	83660	broad.mit.edu	36	15	60899796	60899796	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	60899796	60899796	TLN2	15	G	G	A	43
CNOT1	23019	broad.mit.edu	36	16	57146908	57146908	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	57146908	57146908	CNOT1	16	G	G	T	36
TP53	7157	broad.mit.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	7519119	7519119	TP53	17	T	T	C	51
ZNF521	25925	broad.mit.edu	36	18	21059632	21059632	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	21059632	21059632	ZNF521	18	T	T	C	62
CDH2	1000	broad.mit.edu	36	18	23819523	23819523	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	23819523	23819523	CDH2	18	T	T	C	49
FSHR	2492	broad.mit.edu	36	2	49044418	49044418	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	49044418	49044418	FSHR	2	T	T	A	56
RETSAT	54884	broad.mit.edu	36	2	85431525	85431525	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	85431525	85431525	RETSAT	2	A	A	T	8
ATIC	471	broad.mit.edu	36	2	215885547	215885547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	215885547	215885547	ATIC	2	C	C	T	30
TCF20	6942	broad.mit.edu	36	22	40937616	40937616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	40937616	40937616	TCF20	22	G	G	A	42
ACVR2B	93	broad.mit.edu	36	3	38493821	38493821	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	38493821	38493821	ACVR2B	3	A	A	T	14
KIAA1524	57650	broad.mit.edu	36	3	109753800	109753800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	109753800	109753800	KIAA1524	3	C	C	T	32
STXBP5L	9515	broad.mit.edu	36	3	122458805	122458805	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	122458805	122458805	STXBP5L	3	T	T	A	58
LAMP3	27074	broad.mit.edu	36	3	184354780	184354780	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	184354780	184354780	LAMP3	3	A	A	G	16
C3orf43	255798	broad.mit.edu	36	3	197719526	197719526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	197719526	197719526	C3orf43	3	G	G	A	34
PPP2R2C	5522	broad.mit.edu	36	4	6425275	6425275	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	6425275	6425275	PPP2R2C	4	G	G	T	33
ANAPC4	29945	broad.mit.edu	36	4	25001688	25001688	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	25001688	25001688	ANAPC4	4	G	G	C	44
UGDH	7358	broad.mit.edu	36	4	39178193	39178193	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	39178193	39178193	UGDH	4	G	G	A	33
EPHA5	2044	broad.mit.edu	36	4	65899765	65899765	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	65899765	65899765	EPHA5	4	T	T	C	56
CCT5	22948	broad.mit.edu	36	5	10316335	10316335	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	10316335	10316335	CCT5	5	T	T	G	50
DNAH5	1767	broad.mit.edu	36	5	13823873	13823873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	13823873	13823873	DNAH5	5	C	C	T	23
CUL9	23113	broad.mit.edu	36	6	43260447	43260447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	43260447	43260447	CUL9	6	G	G	A	38
ABCC10	89845	broad.mit.edu	36	6	43510542	43510542	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	43510542	43510542	ABCC10	6	G	G	A	43
ZNF746	155061	broad.mit.edu	36	7	148805656	148805656	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	148805656	148805656	ZNF746	7	C	C	A	22
DLC1	10395	broad.mit.edu	36	8	13004676	13004676	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	13004676	13004676	DLC1	8	C	C	T	30
INTS10	55174	broad.mit.edu	36	8	19719442	19719442	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	19719442	19719442	INTS10	8	A	A	G	7
DMRT1	1761	broad.mit.edu	36	9	884144	884144	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Silent	SNP	884144	884144	DMRT1	9	T	T	A	62
TRUB2	26995	broad.mit.edu	36	9	130111720	130111720	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2045-01	Broad	Missense_Mutation	SNP	130111720	130111720	TRUB2	9	C	C	T	20
SUSD4	55061	broad.mit.edu	36	1	221603326	221603328	+	In_Frame_Del	DEL	TGC	-	TGC	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2045-01	Broad	In_Frame_Del	DEL	221603326	221603328	SUSD4	1	TGC	-	TGC	63
LRRIQ1	84125	broad.mit.edu	36	12	84042003	84042003	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-09-2045-01	TCGA-09-2045-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2045-01	Broad	Frame_Shift_Del	DEL	84042003	84042003	LRRIQ1	12	A	-	A	7
