Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
NT5C1A	84618	broad.mit.edu	36	1	39899355	39899355	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	39899355	39899355	NT5C1A	1	T	T	C	62
C1orf168	199920	broad.mit.edu	36	1	56961914	56961914	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	56961914	56961914	C1orf168	1	T	T	C	63
PI4KB	5298	broad.mit.edu	36	1	149541337	149541337	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	149541337	149541337	PI4KB	1	G	G	C	41
CD5L	922	broad.mit.edu	36	1	156069752	156069752	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	156069752	156069752	CD5L	1	C	C	A	23
OR10T2	128360	broad.mit.edu	36	1	156635631	156635631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	156635631	156635631	OR10T2	1	C	C	T	18
FAM71A	149647	broad.mit.edu	36	1	210865159	210865159	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	210865159	210865159	FAM71A	1	A	A	T	3
USH2A	7399	broad.mit.edu	36	1	213914970	213914970	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	213914970	213914970	USH2A	1	C	C	T	30
TRIM58	25893	broad.mit.edu	36	1	246106327	246106327	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	246106327	246106327	TRIM58	1	G	G	A	46
UPF2	26019	broad.mit.edu	36	10	12079761	12079761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	12079761	12079761	UPF2	10	G	G	C	46
WAPAL	23063	broad.mit.edu	36	10	88187336	88187336	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	88187336	88187336	WAPAL	10	C	C	G	21
OPN4	94233	broad.mit.edu	36	10	88409710	88409710	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	88409710	88409710	OPN4	10	G	G	C	33
HPSE2	60495	broad.mit.edu	36	10	100894116	100894116	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	100894116	100894116	HPSE2	10	T	T	A	64
OR51F2	119694	broad.mit.edu	36	11	4800137	4800137	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	4800137	4800137	OR51F2	11	G	G	A	42
ACCS	84680	broad.mit.edu	36	11	44055977	44055977	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	44055977	44055977	ACCS	11	G	G	C	47
MS4A1	931	broad.mit.edu	36	11	59987094	59987094	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	59987094	59987094	MS4A1	11	G	G	T	44
FADS2	9415	broad.mit.edu	36	11	61361848	61361848	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	61361848	61361848	FADS2	11	C	C	G	24
GAB2	9846	broad.mit.edu	36	11	77612164	77612164	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	77612164	77612164	GAB2	11	G	G	C	46
DSCAML1	57453	broad.mit.edu	36	11	116892526	116892526	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	116892526	116892526	DSCAML1	11	C	C	A	27
NAV3	89795	broad.mit.edu	36	12	77037611	77037611	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	77037611	77037611	NAV3	12	C	C	G	25
LRRIQ1	84125	broad.mit.edu	36	12	83973687	83973687	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Nonsense_Mutation	SNP	83973687	83973687	LRRIQ1	12	C	C	T	19
EP400	57634	broad.mit.edu	36	12	131082509	131082509	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	131082509	131082509	EP400	12	A	A	C	6
SYNE2	23224	broad.mit.edu	36	14	63674394	63674394	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	63674394	63674394	SYNE2	14	T	T	G	55
DMXL2	23312	broad.mit.edu	36	15	49616266	49616266	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	49616266	49616266	DMXL2	15	A	A	C	16
MEF2A	4205	broad.mit.edu	36	15	98068481	98068481	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	98068481	98068481	MEF2A	15	T	T	A	54
NTHL1	4913	broad.mit.edu	36	16	2030019	2030019	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	2030019	2030019	NTHL1	16	C	C	T	21
ABCA3	21	broad.mit.edu	36	16	2287485	2287485	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	2287485	2287485	ABCA3	16	G	G	C	33
C16orf62	57020	broad.mit.edu	36	16	19491949	19491949	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	19491949	19491949	C16orf62	16	C	C	G	30
PALB2	79728	broad.mit.edu	36	16	23554260	23554260	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Nonsense_Mutation	SNP	23554260	23554260	PALB2	16	G	G	A	45
MT4	84560	broad.mit.edu	36	16	55160320	55160320	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Nonsense_Mutation	SNP	55160320	55160320	MT4	16	C	C	G	29
KIAA1609	57707	broad.mit.edu	36	16	83080502	83080502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	83080502	83080502	KIAA1609	16	C	C	A	18
OR1D2	4991	broad.mit.edu	36	17	2942515	2942515	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	2942515	2942515	OR1D2	17	A	A	T	15
NLRP1	22861	broad.mit.edu	36	17	5403432	5403432	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	5403432	5403432	NLRP1	17	C	C	T	23
CASC3	22794	broad.mit.edu	36	17	35573442	35573442	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	35573442	35573442	CASC3	17	G	G	C	40
MED13	9969	broad.mit.edu	36	17	57414887	57414887	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	57414887	57414887	MED13	17	C	C	G	32
TRAPPC8	22878	broad.mit.edu	36	18	27666044	27666044	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Splice_Site_SNP	SNP	27666044	27666044	TRAPPC8	18	C	C	T	18
ISYNA1	51477	broad.mit.edu	36	19	18407730	18407730	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	18407730	18407730	ISYNA1	19	G	G	T	44
C19orf46	163183	broad.mit.edu	36	19	41189971	41189971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	41189971	41189971	C19orf46	19	T	T	C	62
C2orf53	339779	broad.mit.edu	36	2	27213657	27213657	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	27213657	27213657	C2orf53	2	G	G	C	43
PLB1	151056	broad.mit.edu	36	2	28625255	28625255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	28625255	28625255	PLB1	2	G	G	A	45
NLRC4	58484	broad.mit.edu	36	2	32331086	32331086	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	32331086	32331086	NLRC4	2	G	G	T	48
LRP1B	53353	broad.mit.edu	36	2	141287810	141287810	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	141287810	141287810	LRP1B	2	A	A	G	5
RIF1	55183	broad.mit.edu	36	2	152022519	152022519	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Splice_Site_SNP	SNP	152022519	152022519	RIF1	2	A	A	G	15
TTN	7273	broad.mit.edu	36	2	179358642	179358642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	179358642	179358642	TTN	2	G	G	C	45
SCRT2	85508	broad.mit.edu	36	20	592519	592519	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	592519	592519	SCRT2	20	G	G	T	37
LRRN4	164312	broad.mit.edu	36	20	5980815	5980816	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	DNP	5980815	5980816	LRRN4	20	GA	GA	TC	33
LZTR1	8216	broad.mit.edu	36	22	19674673	19674673	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Splice_Site_SNP	SNP	19674673	19674673	LZTR1	22	A	A	C	7
CCDC116	164592	broad.mit.edu	36	22	20318734	20318734	+	Missense_Mutation	SNP	G	G	C	rs35746656	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	20318734	20318734	CCDC116	22	G	G	C	42
TRIOBP	11078	broad.mit.edu	36	22	36451967	36451967	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	36451967	36451967	TRIOBP	22	C	C	G	32
L3MBTL2	83746	broad.mit.edu	36	22	39953805	39953805	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	39953805	39953805	L3MBTL2	22	A	A	C	7
ZC3H7B	23264	broad.mit.edu	36	22	40082310	40082310	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	40082310	40082310	ZC3H7B	22	A	A	G	10
MYLK	4638	broad.mit.edu	36	3	124954057	124954057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	124954057	124954057	MYLK	3	G	G	C	42
CHST2	9435	broad.mit.edu	36	3	144322501	144322501	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	144322501	144322501	CHST2	3	C	C	G	30
SLITRK3	22865	broad.mit.edu	36	3	166388818	166388818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	166388818	166388818	SLITRK3	3	G	G	A	40
KIT	3815	broad.mit.edu	36	4	55268073	55268073	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	55268073	55268073	KIT	4	C	C	T	19
NAF1	92345	broad.mit.edu	36	4	164286454	164286454	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	164286454	164286454	NAF1	4	G	G	C	33
CDH9	1007	broad.mit.edu	36	5	26938369	26938369	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	26938369	26938369	CDH9	5	T	T	A	50
VCAN	1462	broad.mit.edu	36	5	82871373	82871373	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	82871373	82871373	VCAN	5	T	T	C	54
FBN2	2201	broad.mit.edu	36	5	127672948	127672948	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	127672948	127672948	FBN2	5	G	G	A	36
PCDHB2	56133	broad.mit.edu	36	5	140455013	140455013	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	140455013	140455013	PCDHB2	5	C	C	A	20
BTNL9	153579	broad.mit.edu	36	5	180419230	180419230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	180419230	180419230	BTNL9	5	C	C	T	26
PGK2	5232	broad.mit.edu	36	6	49862556	49862556	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	49862556	49862556	PGK2	6	C	C	A	27
CASP8AP2	9994	broad.mit.edu	36	6	90632438	90632438	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	90632438	90632438	CASP8AP2	6	C	C	G	32
HOXA1	3198	broad.mit.edu	36	7	27101502	27101502	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	27101502	27101502	HOXA1	7	G	G	T	47
PSPH	5723	broad.mit.edu	36	7	56046949	56046949	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Nonstop_Mutation	SNP	56046949	56046949	PSPH	7	T	T	A	60
GAL3ST4	79690	broad.mit.edu	36	7	99596462	99596462	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	99596462	99596462	GAL3ST4	7	C	C	T	23
NUP205	23165	broad.mit.edu	36	7	134920120	134920120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	134920120	134920120	NUP205	7	C	C	G	28
GIMAP4	55303	broad.mit.edu	36	7	149900208	149900208	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	149900208	149900208	GIMAP4	7	C	C	T	23
CSPP1	79848	broad.mit.edu	36	8	68233900	68233900	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	68233900	68233900	CSPP1	8	G	G	C	33
SULF1	23213	broad.mit.edu	36	8	70661237	70661237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	70661237	70661237	SULF1	8	C	C	G	32
RNF19A	25897	broad.mit.edu	36	8	101351375	101351375	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	101351375	101351375	RNF19A	8	A	A	T	16
PKHD1L1	93035	broad.mit.edu	36	8	110573368	110573368	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Nonsense_Mutation	SNP	110573368	110573368	PKHD1L1	8	T	T	G	61
MID1	4281	broad.mit.edu	36	X	10397842	10397842	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	10397842	10397842	MID1	23	C	C	G	28
ARAF	369	broad.mit.edu	36	X	47315352	47315352	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Silent	SNP	47315352	47315352	ARAF	23	C	C	T	22
KDM5C	8242	broad.mit.edu	36	X	53239375	53239375	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	53239375	53239375	KDM5C	23	G	G	A	47
NXF2	56001	broad.mit.edu	36	X	101502189	101502189	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-09-2056-01	Broad	Missense_Mutation	SNP	101502189	101502189	NXF2	23	G	G	T	46
OVGP1	5016	broad.mit.edu	36	1	111765514	111765515	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2056-01	Broad	Frame_Shift_Ins	INS	111765514	111765515	OVGP1	1	-	A	-	45
COPB2	9276	broad.mit.edu	36	3	140560638	140560639	+	Frame_Shift_Del	DEL	TG	-	TG	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2056-01	Broad	Frame_Shift_Del	DEL	140560638	140560639	COPB2	3	TG	-	TG	55
ZFPM2	23414	broad.mit.edu	36	8	106884883	106884890	+	Frame_Shift_Del	DEL	AACTTTAT	-	AACTTTAT	novel	Unknown	TCGA-09-2056-01	TCGA-09-2056-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-09-2056-01	Broad	Frame_Shift_Del	DEL	106884883	106884890	ZFPM2	8	AACTTTAT	-	AACTTTAT	1
