Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PRAMEF4	400735	broad.mit.edu	36	1	12862293	12862293	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	12862293	12862293	PRAMEF4	1	C	C	G	32
IL12RB2	3595	broad.mit.edu	36	1	67589210	67589210	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	67589210	67589210	IL12RB2	1	G	G	A	35
ZNF697	90874	broad.mit.edu	36	1	119967025	119967025	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	119967025	119967025	ZNF697	1	C	C	T	23
ZBTB7B	51043	broad.mit.edu	36	1	153254223	153254223	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	153254223	153254223	ZBTB7B	1	G	G	A	45
RGS4	5999	broad.mit.edu	36	1	161310852	161310852	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	161310852	161310852	RGS4	1	C	C	T	23
CNIH4	29097	broad.mit.edu	36	1	222614833	222614833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	222614833	222614833	CNIH4	1	C	C	T	32
ARID4B	51742	broad.mit.edu	36	1	233412052	233412052	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Nonsense_Mutation	SNP	233412052	233412052	ARID4B	1	C	C	T	26
ITIH5	80760	broad.mit.edu	36	10	7658806	7658806	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	7658806	7658806	ITIH5	10	C	C	G	27
ANKRD30A	91074	broad.mit.edu	36	10	37470979	37470979	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	37470979	37470979	ANKRD30A	10	T	T	A	50
DLG5	9231	broad.mit.edu	36	10	79265505	79265505	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	79265505	79265505	DLG5	10	A	A	C	12
ZNF518A	9849	broad.mit.edu	36	10	97906850	97906850	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	97906850	97906850	ZNF518A	10	C	C	T	30
LOXL4	84171	broad.mit.edu	36	10	100005384	100005384	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	100005384	100005384	LOXL4	10	C	C	G	23
SLC6A5	9152	broad.mit.edu	36	11	20606139	20606139	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	20606139	20606139	SLC6A5	11	T	T	C	61
LRRC4C	57689	broad.mit.edu	36	11	40094374	40094374	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	40094374	40094374	LRRC4C	11	A	A	C	10
OR5L1	219437	broad.mit.edu	36	11	55336359	55336359	+	Missense_Mutation	SNP	G	G	C	rs61735738	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	55336359	55336359	OR5L1	11	G	G	C	40
LPXN	9404	broad.mit.edu	36	11	58073901	58073901	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	58073901	58073901	LPXN	11	T	T	C	52
SLC22A25	387601	broad.mit.edu	36	11	62753477	62753477	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	62753477	62753477	SLC22A25	11	A	A	G	12
SSH3	54961	broad.mit.edu	36	11	66835861	66835861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	66835861	66835861	SSH3	11	C	C	T	30
LRRK2	120892	broad.mit.edu	36	12	38979286	38979286	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Nonsense_Mutation	SNP	38979286	38979286	LRRK2	12	T	T	A	58
CLLU1OS	574028	broad.mit.edu	36	12	91342744	91342744	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	91342744	91342744	CLLU1OS	12	T	T	G	62
RASAL1	8437	broad.mit.edu	36	12	112026390	112026390	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	112026390	112026390	RASAL1	12	C	C	T	30
TPCN1	53373	broad.mit.edu	36	12	112213821	112213821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	112213821	112213821	TPCN1	12	C	C	T	21
WSB2	55884	broad.mit.edu	36	12	116956429	116956429	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	116956429	116956429	WSB2	12	T	T	C	63
RPLP0	6175	broad.mit.edu	36	12	119119580	119119580	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	119119580	119119580	RPLP0	12	A	A	G	15
MTUS2	23281	broad.mit.edu	36	13	28497284	28497284	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	28497284	28497284	MTUS2	13	G	G	T	35
HMGB1	3146	broad.mit.edu	36	13	29935343	29935343	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Splice_Site_SNP	SNP	29935343	29935343	HMGB1	13	C	C	T	19
GPC5	2262	broad.mit.edu	36	13	91178860	91178860	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	91178860	91178860	GPC5	13	A	A	G	11
MCF2L	23263	broad.mit.edu	36	13	112682002	112682002	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	112682002	112682002	MCF2L	13	C	C	G	30
GAS6	2621	broad.mit.edu	36	13	113572816	113572816	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	113572816	113572816	GAS6	13	C	C	T	30
FANCM	57697	broad.mit.edu	36	14	44714326	44714326	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	44714326	44714326	FANCM	14	T	T	C	57
KLHDC2	23588	broad.mit.edu	36	14	49314664	49314664	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	49314664	49314664	KLHDC2	14	G	G	A	44
C14orf135	64430	broad.mit.edu	36	14	59651732	59651732	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	59651732	59651732	C14orf135	14	A	A	G	4
BAG5	9529	broad.mit.edu	36	14	103097175	103097175	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	103097175	103097175	BAG5	14	A	A	C	2
MKRN3	7681	broad.mit.edu	36	15	21362248	21362248	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	21362248	21362248	MKRN3	15	C	C	T	22
CYP19A1	1588	broad.mit.edu	36	15	49307299	49307299	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	49307299	49307299	CYP19A1	15	G	G	A	33
LMF1	64788	broad.mit.edu	36	16	859943	859943	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	859943	859943	LMF1	16	A	A	T	7
LMF1	64788	broad.mit.edu	36	16	860800	860800	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	860800	860800	LMF1	16	T	T	A	54
LMF1	64788	broad.mit.edu	36	16	869648	869648	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	869648	869648	LMF1	16	C	C	T	31
CASKIN1	57524	broad.mit.edu	36	16	2175362	2175362	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	2175362	2175362	CASKIN1	16	G	G	A	37
ABCC1	4363	broad.mit.edu	36	16	16116173	16116173	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	16116173	16116173	ABCC1	16	G	G	A	47
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	C	T	23
WDR16	146845	broad.mit.edu	36	17	9476937	9476937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	9476937	9476937	WDR16	17	C	C	T	19
SHMT1	6470	broad.mit.edu	36	17	18172818	18172818	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	18172818	18172818	SHMT1	17	A	A	C	3
GAS2L2	246176	broad.mit.edu	36	17	31101239	31101239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	31101239	31101239	GAS2L2	17	C	C	G	28
KRT31	3881	broad.mit.edu	36	17	36807218	36807218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	36807218	36807218	KRT31	17	C	C	G	26
KLHL11	55175	broad.mit.edu	36	17	37263588	37263588	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	37263588	37263588	KLHL11	17	C	C	T	32
TUBG2	27175	broad.mit.edu	36	17	38071305	38071305	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	38071305	38071305	TUBG2	17	G	G	C	38
MPP3	4356	broad.mit.edu	36	17	39264780	39264780	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	39264780	39264780	MPP3	17	G	G	C	36
NGFR	4804	broad.mit.edu	36	17	44945149	44945149	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	44945149	44945149	NGFR	17	G	G	T	46
CLTC	1213	broad.mit.edu	36	17	55115150	55115150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	55115150	55115150	CLTC	17	A	A	G	14
AZI1	22994	broad.mit.edu	36	17	76779382	76779382	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	76779382	76779382	AZI1	17	G	G	C	34
LAMA3	3909	broad.mit.edu	36	18	19583423	19583423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	19583423	19583423	LAMA3	18	G	G	A	39
ILF3	3609	broad.mit.edu	36	19	10653757	10653757	+	Silent	SNP	G	G	A	rs35968299	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Silent	SNP	10653757	10653757	ILF3	19	G	G	A	33
IL28A	282616	broad.mit.edu	36	19	44451639	44451639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	44451639	44451639	IL28A	19	C	C	G	31
GRWD1	83743	broad.mit.edu	36	19	53648089	53648089	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	53648089	53648089	GRWD1	19	G	G	A	40
RPS9	6203	broad.mit.edu	36	19	59403184	59403184	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	59403184	59403184	RPS9	19	C	C	A	23
DTNB	1838	broad.mit.edu	36	2	25531778	25531778	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	25531778	25531778	DTNB	2	C	C	T	23
ANKRD36	375248	broad.mit.edu	36	2	97143353	97143354	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Nonsense_Mutation	DNP	97143353	97143354	ANKRD36	2	CC	CC	GT	18
ZEB2	9839	broad.mit.edu	36	2	144903880	144903880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	144903880	144903880	ZEB2	2	T	T	C	50
FMNL2	114793	broad.mit.edu	36	2	153184315	153184315	+	Silent	SNP	C	C	A	rs72290335	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	153184315	153184315	FMNL2	2	C	C	A	22
FMNL2	114793	broad.mit.edu	36	2	153184318	153184318	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	153184318	153184318	FMNL2	2	T	T	C	54
XIRP2	129446	broad.mit.edu	36	2	167822992	167822992	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	167822992	167822992	XIRP2	2	C	C	A	26
TTN	7273	broad.mit.edu	36	2	179293907	179293907	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	179293907	179293907	TTN	2	G	G	A	38
TTN	7273	broad.mit.edu	36	2	179320116	179320117	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	DNP	179320116	179320117	TTN	2	TG	TG	CT	59
RAPH1	65059	broad.mit.edu	36	2	204014379	204014379	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Silent	SNP	204014379	204014379	RAPH1	2	G	G	T	47
ABCA12	26154	broad.mit.edu	36	2	215553475	215553475	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	215553475	215553475	ABCA12	2	G	G	A	45
SLC16A14	151473	broad.mit.edu	36	2	230618979	230618979	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	230618979	230618979	SLC16A14	2	G	G	T	41
UGT1A7	54577	broad.mit.edu	36	2	234256082	234256082	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Nonsense_Mutation	SNP	234256082	234256082	UGT1A7	2	C	C	T	27
ATRN	8455	broad.mit.edu	36	20	3526566	3526566	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	3526566	3526566	ATRN	20	T	T	A	63
TTLL9	164395	broad.mit.edu	36	20	29994413	29994413	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	29994413	29994413	TTLL9	20	C	C	T	27
PTGIS	5740	broad.mit.edu	36	20	47563206	47563206	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Splice_Site_SNP	SNP	47563206	47563206	PTGIS	20	C	C	T	32
CDH4	1002	broad.mit.edu	36	20	59853122	59853122	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	59853122	59853122	CDH4	20	C	C	T	23
CLDN17	26285	broad.mit.edu	36	21	30460307	30460307	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	30460307	30460307	CLDN17	21	A	A	C	3
MN1	4330	broad.mit.edu	36	22	26523244	26523244	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	26523244	26523244	MN1	22	C	C	T	31
DEPDC5	9681	broad.mit.edu	36	22	30492610	30492610	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Nonsense_Mutation	SNP	30492610	30492610	DEPDC5	22	C	C	T	29
EFCAB6	64800	broad.mit.edu	36	22	42343043	42343043	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	42343043	42343043	EFCAB6	22	G	G	C	33
ROBO2	6092	broad.mit.edu	36	3	77734114	77734114	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	77734114	77734114	ROBO2	3	T	T	A	52
GPR156	165829	broad.mit.edu	36	3	121375008	121375008	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Splice_Site_SNP	SNP	121375008	121375008	GPR156	3	C	C	T	28
IGSF10	285313	broad.mit.edu	36	3	152646317	152646317	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	152646317	152646317	IGSF10	3	G	G	A	48
SMC4	10051	broad.mit.edu	36	3	161603287	161603287	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	161603287	161603287	SMC4	3	G	G	A	45
AFM	173	broad.mit.edu	36	4	74570533	74570533	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	74570533	74570533	AFM	4	A	A	G	3
WDR17	116966	broad.mit.edu	36	4	177283414	177283414	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	177283414	177283414	WDR17	4	T	T	C	49
TUBB4Q	56604	broad.mit.edu	36	4	191140885	191140886	+	Missense_Mutation	DNP	TG	TG	AA	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	DNP	191140885	191140886	TUBB4Q	4	TG	TG	AA	55
ZNF608	57507	broad.mit.edu	36	5	124012540	124012540	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	124012540	124012540	ZNF608	5	C	C	T	31
PCDHA2	56146	broad.mit.edu	36	5	140155230	140155230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	140155230	140155230	PCDHA2	5	C	C	A	28
HSPA1L	3305	broad.mit.edu	36	6	31886415	31886415	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Silent	SNP	31886415	31886415	HSPA1L	6	G	G	T	39
GPRC6A	222545	broad.mit.edu	36	6	117237372	117237372	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	117237372	117237372	GPRC6A	6	A	A	T	12
NMBR	4829	broad.mit.edu	36	6	142451184	142451184	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	142451184	142451184	NMBR	6	G	G	A	37
THBS2	7058	broad.mit.edu	36	6	169390750	169390750	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	169390750	169390750	THBS2	6	G	G	A	40
HOXA11	3207	broad.mit.edu	36	7	27190868	27190868	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	27190868	27190868	HOXA11	7	C	C	G	31
GRM3	2913	broad.mit.edu	36	7	86306941	86306941	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Silent	SNP	86306941	86306941	GRM3	7	A	A	G	7
LRRN3	54674	broad.mit.edu	36	7	110550787	110550787	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	110550787	110550787	LRRN3	7	C	C	T	32
PPP1R3A	5506	broad.mit.edu	36	7	113306644	113306644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	113306644	113306644	PPP1R3A	7	T	T	A	50
TMEM176B	28959	broad.mit.edu	36	7	150124586	150124586	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	150124586	150124586	TMEM176B	7	G	G	A	40
TEX15	56154	broad.mit.edu	36	8	30825598	30825598	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	30825598	30825598	TEX15	8	A	A	G	9
IDO2	169355	broad.mit.edu	36	8	39959375	39959375	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	39959375	39959375	IDO2	8	C	C	A	20
SPAG1	6674	broad.mit.edu	36	8	101322343	101322343	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	101322343	101322343	SPAG1	8	C	C	T	28
KIAA1797	54914	broad.mit.edu	36	9	20864701	20864701	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	20864701	20864701	KIAA1797	9	C	C	G	30
CDKL5	6792	broad.mit.edu	36	X	18578623	18578623	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Silent	SNP	18578623	18578623	CDKL5	23	C	C	A	22
BMP15	9210	broad.mit.edu	36	X	50675797	50675797	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	50675797	50675797	BMP15	23	A	A	T	7
MTMR8	55613	broad.mit.edu	36	X	63491423	63491423	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	63491423	63491423	MTMR8	23	T	T	A	63
DACH2	117154	broad.mit.edu	36	X	85956386	85956386	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	85956386	85956386	DACH2	23	A	A	T	3
DIAPH2	1730	broad.mit.edu	36	X	96389487	96389487	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	96389487	96389487	DIAPH2	23	A	A	T	3
SLC25A14	9016	broad.mit.edu	36	X	129301983	129301983	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-1032-01	Broad	Missense_Mutation	SNP	129301983	129301983	SLC25A14	23	C	C	T	25
RANBP1	5902	broad.mit.edu	36	22	18489874	18489899	+	Frame_Shift_Del	DEL	CAAGGAGAAAGGGGCCATCCGCCTCC	-	CAAGGAGAAAGGGGCCATCCGCCTCC	novel	Unknown	TCGA-23-1032-01	TCGA-23-1032-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-23-1032-01	Broad	Frame_Shift_Del	DEL	18489874	18489899	RANBP1	22	CAAGGAGAAAGGGGCCATCCGCCTCC	-	CAAGGAGAAAGGGGCCATCCGCCTCC	17
