Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
E2F2	1870	broad.mit.edu	36	1	23729810	23729810	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	23729810	23729810	E2F2	1	C	C	A	31
LHX8	431707	broad.mit.edu	36	1	75399099	75399099	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	75399099	75399099	LHX8	1	A	A	C	6
SLC44A5	204962	broad.mit.edu	36	1	75476848	75476848	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	75476848	75476848	SLC44A5	1	C	C	G	32
DNMBP	23268	broad.mit.edu	36	10	101721823	101721823	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	101721823	101721823	DNMBP	10	C	C	T	19
MRGPRX2	117194	broad.mit.edu	36	11	19034061	19034061	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	19034061	19034061	MRGPRX2	11	G	G	A	43
RCOR2	283248	broad.mit.edu	36	11	63438132	63438132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	63438132	63438132	RCOR2	11	C	C	T	31
ADAMTS8	11095	broad.mit.edu	36	11	129780955	129780955	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	129780955	129780955	ADAMTS8	11	A	A	G	10
ATP2A2	488	broad.mit.edu	36	12	109267487	109267487	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	109267487	109267487	ATP2A2	12	T	T	C	52
DCAF5	8816	broad.mit.edu	36	14	68590696	68590696	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	68590696	68590696	DCAF5	14	A	A	T	6
WDR76	79968	broad.mit.edu	36	15	41907809	41907809	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	41907809	41907809	WDR76	15	G	G	A	41
RAB26	25837	broad.mit.edu	36	16	2143195	2143195	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	2143195	2143195	RAB26	16	C	C	G	19
RAB26	25837	broad.mit.edu	36	16	2143197	2143197	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	2143197	2143197	RAB26	16	T	T	G	59
ANKRD11	29123	broad.mit.edu	36	16	87874531	87874531	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	87874531	87874531	ANKRD11	16	G	G	A	42
ATP2A3	489	broad.mit.edu	36	17	3778345	3778345	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	3778345	3778345	ATP2A3	17	C	C	T	30
TP53	7157	broad.mit.edu	36	17	7518311	7518311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	7518311	7518311	TP53	17	A	A	T	12
DNAH2	146754	broad.mit.edu	36	17	7622388	7622388	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	7622388	7622388	DNAH2	17	G	G	A	42
TEX2	55852	broad.mit.edu	36	17	59645280	59645280	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	59645280	59645280	TEX2	17	C	C	A	32
KIF19	124602	broad.mit.edu	36	17	69862025	69862025	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	69862025	69862025	KIF19	17	A	A	C	6
CDH2	1000	broad.mit.edu	36	18	23839844	23839844	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	23839844	23839844	CDH2	18	A	A	T	5
DSG2	1829	broad.mit.edu	36	18	27375185	27375185	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	27375185	27375185	DSG2	18	C	C	T	27
FAM108A1	81926	broad.mit.edu	36	19	1831007	1831007	+	Missense_Mutation	SNP	T	T	G	rs7248295	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	1831007	1831007	FAM108A1	19	T	T	G	57
DNM2	1785	broad.mit.edu	36	19	10791733	10791734	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	DNP	10791733	10791734	DNM2	19	GC	GC	TG	34
PCGF1	84759	broad.mit.edu	36	2	74586392	74586392	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	74586392	74586392	PCGF1	2	T	T	C	63
THSD7B	80731	broad.mit.edu	36	2	137885763	137885763	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	137885763	137885763	THSD7B	2	G	G	T	46
FASTKD1	79675	broad.mit.edu	36	2	170125449	170125449	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	170125449	170125449	FASTKD1	2	G	G	C	44
AOX1	316	broad.mit.edu	36	2	201235890	201235890	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	201235890	201235890	AOX1	2	G	G	A	34
ZDBF2	57683	broad.mit.edu	36	2	206880751	206880751	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	206880751	206880751	ZDBF2	2	A	A	G	9
MITF	4286	broad.mit.edu	36	3	70091212	70091212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	70091212	70091212	MITF	3	G	G	T	37
UGT2B10	7365	broad.mit.edu	36	4	69716510	69716510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	69716510	69716510	UGT2B10	4	C	C	A	32
PCDH1	5097	broad.mit.edu	36	5	141228620	141228620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	141228620	141228620	PCDH1	5	C	C	T	23
GPR151	134391	broad.mit.edu	36	5	145874993	145874993	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	145874993	145874993	GPR151	5	C	C	T	20
C5orf4	10826	broad.mit.edu	36	5	154183346	154183346	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Splice_Site_SNP	SNP	154183346	154183346	C5orf4	5	C	C	T	24
AIMP2	7965	broad.mit.edu	36	7	6024012	6024012	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	6024012	6024012	AIMP2	7	G	G	T	39
CHRNB3	1142	broad.mit.edu	36	8	42706201	42706201	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	42706201	42706201	CHRNB3	8	C	C	T	19
TAF2	6873	broad.mit.edu	36	8	120878471	120878471	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	120878471	120878471	TAF2	8	C	C	G	24
SEC16A	9919	broad.mit.edu	36	9	138461944	138461944	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	138461944	138461944	SEC16A	9	G	G	A	43
GPR143	4935	broad.mit.edu	36	X	9671619	9671619	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	9671619	9671619	GPR143	23	C	C	A	21
BEND2	139105	broad.mit.edu	36	X	18131659	18131659	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Nonsense_Mutation	SNP	18131659	18131659	BEND2	23	G	G	A	40
TFE3	7030	broad.mit.edu	36	X	48777971	48777971	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Silent	SNP	48777971	48777971	TFE3	23	G	G	A	40
KIF4A	24137	broad.mit.edu	36	X	69543574	69543574	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	69543574	69543574	KIF4A	23	G	G	A	44
ZMAT1	84460	broad.mit.edu	36	X	101039517	101039517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	101039517	101039517	ZMAT1	23	G	G	A	45
ZIC3	7547	broad.mit.edu	36	X	136477535	136477535	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01	TCGA-24-2019-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2019-01	Broad	Missense_Mutation	SNP	136477535	136477535	ZIC3	23	C	C	G	26
