Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
NPHP4	261734	broad.mit.edu	36	1	5930817	5930817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	5930817	5930817	NPHP4	1	C	C	G	19
PADI6	353238	broad.mit.edu	36	1	17600483	17600483	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	17600483	17600483	PADI6	1	G	G	C	44
KIF17	57576	broad.mit.edu	36	1	20897531	20897531	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	20897531	20897531	KIF17	1	C	C	G	24
HMGCL	3155	broad.mit.edu	36	1	24003512	24003512	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	24003512	24003512	HMGCL	1	G	G	A	35
SRSF4	6429	broad.mit.edu	36	1	29347560	29347560	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	29347560	29347560	SRSF4	1	A	A	C	7
AMPD1	270	broad.mit.edu	36	1	115018116	115018116	+	Silent	SNP	G	G	A	rs34778674	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	115018116	115018116	AMPD1	1	G	G	A	41
ADAR	103	broad.mit.edu	36	1	152825367	152825367	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	152825367	152825367	ADAR	1	T	T	C	64
CCT3	7203	broad.mit.edu	36	1	154548617	154548617	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	154548617	154548617	CCT3	1	C	C	G	20
INSRR	3645	broad.mit.edu	36	1	155085753	155085753	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	155085753	155085753	INSRR	1	T	T	C	60
CASQ1	844	broad.mit.edu	36	1	158431493	158431493	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	158431493	158431493	CASQ1	1	A	A	G	12
DARS2	55157	broad.mit.edu	36	1	172069149	172069149	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	172069149	172069149	DARS2	1	C	C	G	32
CACNA1S	779	broad.mit.edu	36	1	199313732	199313732	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	199313732	199313732	CACNA1S	1	C	C	A	28
PKP1	5317	broad.mit.edu	36	1	199553426	199553426	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	199553426	199553426	PKP1	1	G	G	T	35
CHI3L1	1116	broad.mit.edu	36	1	201416371	201416371	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	201416371	201416371	CHI3L1	1	C	C	A	22
KIAA1804	84451	broad.mit.edu	36	1	231578332	231578332	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	231578332	231578332	KIAA1804	1	C	C	T	31
TRIM58	25893	broad.mit.edu	36	1	246106268	246106268	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	246106268	246106268	TRIM58	1	C	C	A	20
AKR1C1	1645	broad.mit.edu	36	10	4998151	4998151	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	4998151	4998151	AKR1C1	10	G	G	A	34
SVIL	6840	broad.mit.edu	36	10	29862321	29862321	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	29862321	29862321	SVIL	10	T	T	G	61
SVIL	6840	broad.mit.edu	36	10	29879989	29879989	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	29879989	29879989	SVIL	10	G	G	C	33
ZNF438	220929	broad.mit.edu	36	10	31177724	31177724	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	31177724	31177724	ZNF438	10	A	A	G	4
C10orf71	118461	broad.mit.edu	36	10	50201419	50201419	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	50201419	50201419	C10orf71	10	A	A	C	15
LDB3	11155	broad.mit.edu	36	10	88431336	88431336	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	88431336	88431336	LDB3	10	G	G	C	42
BTRC	8945	broad.mit.edu	36	10	103286364	103286364	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	103286364	103286364	BTRC	10	T	T	A	64
TECTB	6975	broad.mit.edu	36	10	114036084	114036084	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	114036084	114036084	TECTB	10	T	T	C	59
ATRNL1	26033	broad.mit.edu	36	10	117016428	117016428	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	117016428	117016428	ATRNL1	10	G	G	T	43
INPP5F	22876	broad.mit.edu	36	10	121561360	121561360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	121561360	121561360	INPP5F	10	G	G	A	41
MUC5B	727897	broad.mit.edu	36	11	1229130	1229130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	1229130	1229130	MUC5B	11	C	C	T	19
SBF2	81846	broad.mit.edu	36	11	9834647	9834647	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	9834647	9834647	SBF2	11	T	T	G	60
ARFGAP2	84364	broad.mit.edu	36	11	47144488	47144488	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	47144488	47144488	ARFGAP2	11	C	C	G	25
OR4S2	219431	broad.mit.edu	36	11	55175024	55175024	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	55175024	55175024	OR4S2	11	A	A	T	3
OR10W1	81341	broad.mit.edu	36	11	57791742	57791742	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	57791742	57791742	OR10W1	11	G	G	A	46
OR5B3	441608	broad.mit.edu	36	11	57927449	57927449	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	57927449	57927449	OR5B3	11	T	T	C	61
OSBP	5007	broad.mit.edu	36	11	59118142	59118142	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	59118142	59118142	OSBP	11	T	T	C	55
NUMA1	4926	broad.mit.edu	36	11	71404395	71404395	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	71404395	71404395	NUMA1	11	G	G	A	38
EED	8726	broad.mit.edu	36	11	85633952	85633952	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	85633952	85633952	EED	11	G	G	A	39
TRPC6	7225	broad.mit.edu	36	11	100867523	100867523	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	100867523	100867523	TRPC6	11	G	G	T	36
ANGPTL5	253935	broad.mit.edu	36	11	101267415	101267415	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	101267415	101267415	ANGPTL5	11	G	G	A	46
NCAM1	4684	broad.mit.edu	36	11	112636188	112636188	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	112636188	112636188	NCAM1	11	C	C	T	18
SCN4B	6330	broad.mit.edu	36	11	117517214	117517214	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	117517214	117517214	SCN4B	11	C	C	A	22
PHLDB1	23187	broad.mit.edu	36	11	118003566	118003566	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	118003566	118003566	PHLDB1	11	A	A	T	7
PRB3	5544	broad.mit.edu	36	12	11312160	11312160	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	11312160	11312160	PRB3	12	C	C	G	30
RECQL	5965	broad.mit.edu	36	12	21515263	21515263	+	Silent	SNP	C	C	G	rs2417989	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	21515263	21515263	RECQL	12	C	C	G	19
C12orf34	84915	broad.mit.edu	36	12	108691299	108691299	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	108691299	108691299	C12orf34	12	G	G	C	33
RASAL1	8437	broad.mit.edu	36	12	112027981	112027981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	112027981	112027981	RASAL1	12	G	G	A	42
PXN	5829	broad.mit.edu	36	12	119143917	119143917	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	119143917	119143917	PXN	12	C	C	G	32
WDR66	144406	broad.mit.edu	36	12	120873797	120873797	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	120873797	120873797	WDR66	12	G	G	C	36
B3GNT4	79369	broad.mit.edu	36	12	121257289	121257289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	121257289	121257289	B3GNT4	12	G	G	A	45
CENPJ	55835	broad.mit.edu	36	13	24378452	24378452	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	24378452	24378452	CENPJ	13	A	A	G	13
GPR137C	283554	broad.mit.edu	36	14	52170020	52170020	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	52170020	52170020	GPR137C	14	G	G	T	41
FERMT2	10979	broad.mit.edu	36	14	52396912	52396912	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	52396912	52396912	FERMT2	14	C	C	A	26
WDHD1	11169	broad.mit.edu	36	14	54518072	54518072	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	54518072	54518072	WDHD1	14	G	G	A	46
DLGAP5	9787	broad.mit.edu	36	14	54706022	54706022	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	54706022	54706022	DLGAP5	14	G	G	C	33
PAPLN	89932	broad.mit.edu	36	14	72789167	72789167	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	72789167	72789167	PAPLN	14	T	T	A	51
C14orf115	55237	broad.mit.edu	36	14	73893578	73893578	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	73893578	73893578	C14orf115	14	G	G	A	46
C15orf2	23742	broad.mit.edu	36	15	22475358	22475358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	22475358	22475358	C15orf2	15	C	C	T	28
OCA2	4948	broad.mit.edu	36	15	25934898	25934898	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	25934898	25934898	OCA2	15	A	A	G	12
MGA	23269	broad.mit.edu	36	15	39808680	39808680	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	39808680	39808680	MGA	15	C	C	G	32
JMJD7-PLA2G4B	100137049	broad.mit.edu	36	15	39924508	39924508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	39924508	39924508	JMJD7-PLA2G4B	15	G	G	C	34
DMXL2	23312	broad.mit.edu	36	15	49560649	49560649	+	Missense_Mutation	SNP	G	G	T	rs3751584	byCluster;byFrequency;byHapMap	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	49560649	49560649	DMXL2	15	G	G	T	40
MAN2A2	4122	broad.mit.edu	36	15	89250628	89250628	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	89250628	89250628	MAN2A2	15	G	G	T	33
MEFV	4210	broad.mit.edu	36	16	3239757	3239757	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	3239757	3239757	MEFV	16	C	C	A	20
ZNF597	146434	broad.mit.edu	36	16	3427015	3427015	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	3427015	3427015	ZNF597	16	G	G	A	39
ACSM5	54988	broad.mit.edu	36	16	20348527	20348527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	20348527	20348527	ACSM5	16	G	G	T	48
NDRG4	65009	broad.mit.edu	36	16	57095667	57095667	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	57095667	57095667	NDRG4	16	A	A	T	7
CMTM4	146223	broad.mit.edu	36	16	65214876	65214876	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	65214876	65214876	CMTM4	16	G	G	C	35
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	7518988	7518988	TP53	17	G	G	A	39
KDM6B	23135	broad.mit.edu	36	17	7695218	7695218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	7695218	7695218	KDM6B	17	C	C	T	21
MYH13	8735	broad.mit.edu	36	17	10157251	10157251	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	10157251	10157251	MYH13	17	G	G	T	44
MYO18A	399687	broad.mit.edu	36	17	24473350	24473350	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	24473350	24473350	MYO18A	17	C	C	T	23
FBXL20	84961	broad.mit.edu	36	17	34674045	34674045	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	34674045	34674045	FBXL20	17	G	G	T	41
FZD2	2535	broad.mit.edu	36	17	39992097	39992097	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	39992097	39992097	FZD2	17	G	G	C	40
MYCBPAP	84073	broad.mit.edu	36	17	45958430	45958431	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	DNP	45958430	45958431	MYCBPAP	17	CC	CC	AT	26
PSMC5	5705	broad.mit.edu	36	17	59262161	59262161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	59262161	59262161	PSMC5	17	C	C	T	25
ZNF521	25925	broad.mit.edu	36	18	21058913	21058913	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	21058913	21058913	ZNF521	18	G	G	T	36
NOTCH3	4854	broad.mit.edu	36	19	15142145	15142145	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	15142145	15142145	NOTCH3	19	A	A	C	8
C19orf55	148137	broad.mit.edu	36	19	40942198	40942198	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	40942198	40942198	C19orf55	19	C	C	A	18
NPHS1	4868	broad.mit.edu	36	19	41034313	41034313	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	41034313	41034313	NPHS1	19	C	C	A	21
ZNF567	163081	broad.mit.edu	36	19	41902406	41902406	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	41902406	41902406	ZNF567	19	T	T	G	51
ZNF227	7770	broad.mit.edu	36	19	49431520	49431520	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	49431520	49431520	ZNF227	19	A	A	C	4
PLA2G4C	8605	broad.mit.edu	36	19	53248188	53248188	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	53248188	53248188	PLA2G4C	19	G	G	A	40
SIGLEC10	89790	broad.mit.edu	36	19	56609555	56609555	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	56609555	56609555	SIGLEC10	19	A	A	C	4
APOB	338	broad.mit.edu	36	2	21084376	21084376	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	21084376	21084376	APOB	2	A	A	T	3
PRKD3	23683	broad.mit.edu	36	2	37363257	37363257	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	37363257	37363257	PRKD3	2	A	A	G	9
FAM161A	84140	broad.mit.edu	36	2	61920467	61920467	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	61920467	61920467	FAM161A	2	T	T	A	57
ANKRD36	375248	broad.mit.edu	36	2	97143353	97143354	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	DNP	97143353	97143354	ANKRD36	2	CC	CC	GT	18
TMEM87B	84910	broad.mit.edu	36	2	112563719	112563719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	112563719	112563719	TMEM87B	2	C	C	G	32
LRP1B	53353	broad.mit.edu	36	2	141075582	141075582	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	141075582	141075582	LRP1B	2	T	T	A	58
ALS2CR12	130540	broad.mit.edu	36	2	201917226	201917226	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	201917226	201917226	ALS2CR12	2	T	T	A	60
MAP2	4133	broad.mit.edu	36	2	210269925	210269925	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	210269925	210269925	MAP2	2	T	T	C	60
SNPH	9751	broad.mit.edu	36	20	1233730	1233730	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	1233730	1233730	SNPH	20	C	C	T	21
SUN5	140732	broad.mit.edu	36	20	31041121	31041121	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	31041121	31041121	SUN5	20	G	G	A	48
DIP2A	23181	broad.mit.edu	36	21	46800336	46800336	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	46800336	46800336	DIP2A	21	A	A	C	1
USP18	11274	broad.mit.edu	36	22	17020540	17020540	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	17020540	17020540	USP18	22	A	A	G	3
SMTN	6525	broad.mit.edu	36	22	29817458	29817458	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	29817458	29817458	SMTN	22	C	C	T	18
CRELD2	79174	broad.mit.edu	36	22	48705208	48705208	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	48705208	48705208	CRELD2	22	T	T	A	55
TBC1D5	9779	broad.mit.edu	36	3	17177465	17177465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	17177465	17177465	TBC1D5	3	G	G	T	48
TRIM71	131405	broad.mit.edu	36	3	32907212	32907212	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	32907212	32907212	TRIM71	3	C	C	A	24
WDR6	11180	broad.mit.edu	36	3	49024648	49024648	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	49024648	49024648	WDR6	3	C	C	T	17
USP4	7375	broad.mit.edu	36	3	49312978	49312978	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	49312978	49312978	USP4	3	G	G	A	42
BBX	56987	broad.mit.edu	36	3	108974571	108974571	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	108974571	108974571	BBX	3	T	T	C	52
KIAA2018	205717	broad.mit.edu	36	3	114860013	114860013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	114860013	114860013	KIAA2018	3	G	G	A	35
C3orf70	285382	broad.mit.edu	36	3	186283923	186283923	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	186283923	186283923	C3orf70	3	T	T	C	62
SEL1L3	23231	broad.mit.edu	36	4	25428885	25428885	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	25428885	25428885	SEL1L3	4	C	C	T	26
LIAS	11019	broad.mit.edu	36	4	39145588	39145588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	39145588	39145588	LIAS	4	G	G	T	34
FRYL	285527	broad.mit.edu	36	4	48254319	48254319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	48254319	48254319	FRYL	4	C	C	G	18
NMU	10874	broad.mit.edu	36	4	56191372	56191372	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	56191372	56191372	NMU	4	A	A	T	13
MMRN1	22915	broad.mit.edu	36	4	91035647	91035647	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	91035647	91035647	MMRN1	4	G	G	T	40
ANK2	287	broad.mit.edu	36	4	114428235	114428235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	114428235	114428235	ANK2	4	C	C	T	25
IRX1	79192	broad.mit.edu	36	5	3652431	3652431	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	3652431	3652431	IRX1	5	C	C	T	30
PRDM9	56979	broad.mit.edu	36	5	23563012	23563012	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	23563012	23563012	PRDM9	5	C	C	G	17
RASGRF2	5924	broad.mit.edu	36	5	80544101	80544101	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	80544101	80544101	RASGRF2	5	A	A	T	14
MAN2A1	4124	broad.mit.edu	36	5	109131253	109131253	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	109131253	109131253	MAN2A1	5	T	T	C	61
SNCAIP	9627	broad.mit.edu	36	5	121789106	121789106	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	121789106	121789106	SNCAIP	5	C	C	T	21
SCGB3A2	117156	broad.mit.edu	36	5	147241259	147241259	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	147241259	147241259	SCGB3A2	5	C	C	T	24
PDE6A	5145	broad.mit.edu	36	5	149263419	149263419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	149263419	149263419	PDE6A	5	G	G	C	36
RBM22	55696	broad.mit.edu	36	5	150060704	150060704	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	150060704	150060704	RBM22	5	G	G	A	46
TMEM63B	55362	broad.mit.edu	36	6	44229509	44229509	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	44229509	44229509	TMEM63B	6	G	G	A	38
GPR116	221395	broad.mit.edu	36	6	46936434	46936434	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Nonsense_Mutation	SNP	46936434	46936434	GPR116	6	G	G	A	47
COL9A1	1297	broad.mit.edu	36	6	71027088	71027088	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	71027088	71027088	COL9A1	6	C	C	A	22
DNAH11	8701	broad.mit.edu	36	7	21713907	21713907	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	21713907	21713907	DNAH11	7	C	C	A	18
EGFR	1956	broad.mit.edu	36	7	55209193	55209193	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	55209193	55209193	EGFR	7	A	A	G	1
C7orf42	55069	broad.mit.edu	36	7	66047479	66047479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	66047479	66047479	C7orf42	7	G	G	C	37
IMMP2L	83943	broad.mit.edu	36	7	110090965	110090965	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	110090965	110090965	IMMP2L	7	G	G	C	43
PLXNA4	91584	broad.mit.edu	36	7	131476037	131476037	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	131476037	131476037	PLXNA4	7	T	T	C	59
ARHGEF10	9639	broad.mit.edu	36	8	1795619	1795619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	1795619	1795619	ARHGEF10	8	G	G	A	41
TNFRSF10A	8797	broad.mit.edu	36	8	23125582	23125582	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	23125582	23125582	TNFRSF10A	8	C	C	A	17
NEFL	4747	broad.mit.edu	36	8	24869819	24869819	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	24869819	24869819	NEFL	8	T	T	C	57
ADAM2	2515	broad.mit.edu	36	8	39813854	39813854	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	39813854	39813854	ADAM2	8	C	C	T	23
RP1	6101	broad.mit.edu	36	8	55705226	55705226	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	55705226	55705226	RP1	8	G	G	T	35
RAD21	5885	broad.mit.edu	36	8	117938792	117938792	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	117938792	117938792	RAD21	8	A	A	G	10
DEPDC6	64798	broad.mit.edu	36	8	121046796	121046796	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	121046796	121046796	DEPDC6	8	G	G	A	46
PARP10	84875	broad.mit.edu	36	8	145130505	145130505	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	145130505	145130505	PARP10	8	C	C	G	25
TTC39B	158219	broad.mit.edu	36	9	15215947	15215947	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	15215947	15215947	TTC39B	9	C	C	G	27
CCL27	10850	broad.mit.edu	36	9	34652602	34652602	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	34652602	34652602	CCL27	9	A	A	G	11
CEP110	11064	broad.mit.edu	36	9	122962300	122962300	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	122962300	122962300	CEP110	9	T	T	C	52
MXRA5	25878	broad.mit.edu	36	X	3271695	3271695	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	3271695	3271695	MXRA5	23	G	G	C	45
NDUFB11	54539	broad.mit.edu	36	X	46888878	46888878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	46888878	46888878	NDUFB11	23	G	G	T	43
TFE3	7030	broad.mit.edu	36	X	48782717	48782717	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	48782717	48782717	TFE3	23	C	C	T	27
CACNA1F	778	broad.mit.edu	36	X	48954002	48954002	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	48954002	48954002	CACNA1F	23	C	C	A	26
HUWE1	10075	broad.mit.edu	36	X	53608260	53608260	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	53608260	53608260	HUWE1	23	C	C	A	24
PHF8	23133	broad.mit.edu	36	X	54031101	54031101	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	54031101	54031101	PHF8	23	T	T	C	57
ZXDA	7789	broad.mit.edu	36	X	57952406	57952406	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	57952406	57952406	ZXDA	23	C	C	T	27
HEPH	9843	broad.mit.edu	36	X	65340096	65340096	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	65340096	65340096	HEPH	23	C	C	A	24
OPHN1	4983	broad.mit.edu	36	X	67419675	67419675	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	67419675	67419675	OPHN1	23	A	A	G	9
POF1B	79983	broad.mit.edu	36	X	84457380	84457380	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	84457380	84457380	POF1B	23	A	A	C	10
DIAPH2	1730	broad.mit.edu	36	X	96214634	96214634	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	96214634	96214634	DIAPH2	23	G	G	T	47
ZMAT1	84460	broad.mit.edu	36	X	101025268	101025268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	101025268	101025268	ZMAT1	23	C	C	T	31
ZBTB33	10009	broad.mit.edu	36	X	119271918	119271918	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Missense_Mutation	SNP	119271918	119271918	ZBTB33	23	C	C	A	20
SMARCA1	6594	broad.mit.edu	36	X	128442389	128442389	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2289-01	Broad	Silent	SNP	128442389	128442389	SMARCA1	23	A	A	G	9
WARS	7453	broad.mit.edu	36	14	99873122	99873169	+	Splice_Site_Del	DEL	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	-	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2289-01	Broad	Splice_Site_Del	DEL	99873122	99873169	WARS	14	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	-	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	39
HERC1	8925	broad.mit.edu	36	15	61737916	61737942	+	In_Frame_Del	DEL	TGCTCTCCTAACGTTATTCTCCCAGAG	-	TGCTCTCCTAACGTTATTCTCCCAGAG	novel	Unknown	TCGA-24-2289-01	TCGA-24-2289-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2289-01	Broad	In_Frame_Del	DEL	61737916	61737942	HERC1	15	TGCTCTCCTAACGTTATTCTCCCAGAG	-	TGCTCTCCTAACGTTATTCTCCCAGAG	55
