Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
UBR4	23352	broad.mit.edu	36	1	19293085	19293085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	19293085	19293085	UBR4	1	C	C	A	18
SRRM1	10250	broad.mit.edu	36	1	24861854	24861854	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Nonsense_Mutation	SNP	24861854	24861854	SRRM1	1	C	C	T	19
TMEM200B	399474	broad.mit.edu	36	1	29320207	29320207	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	29320207	29320207	TMEM200B	1	T	T	A	58
THRAP3	9967	broad.mit.edu	36	1	36530793	36530793	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	36530793	36530793	THRAP3	1	C	C	A	20
MTF2	22823	broad.mit.edu	36	1	93353231	93353231	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	93353231	93353231	MTF2	1	A	A	C	1
COL11A1	1301	broad.mit.edu	36	1	103177215	103177215	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	103177215	103177215	COL11A1	1	C	C	T	23
CELSR2	1952	broad.mit.edu	36	1	109595695	109595695	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	109595695	109595695	CELSR2	1	G	G	C	44
INSRR	3645	broad.mit.edu	36	1	155085352	155085352	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	155085352	155085352	INSRR	1	A	A	C	6
CACNA1E	777	broad.mit.edu	36	1	180030659	180030659	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	180030659	180030659	CACNA1E	1	T	T	C	62
RABIF	5877	broad.mit.edu	36	1	201124798	201124798	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	201124798	201124798	RABIF	1	G	G	T	39
C1orf95	375057	broad.mit.edu	36	1	224851224	224851224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	224851224	224851224	C1orf95	1	C	C	G	24
OR11L1	391189	broad.mit.edu	36	1	246071712	246071712	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	246071712	246071712	OR11L1	1	A	A	T	7
FAM21B	55747	broad.mit.edu	36	10	51559210	51559210	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	51559210	51559210	FAM21B	10	G	G	A	40
LCOR	84458	broad.mit.edu	36	10	98705136	98705136	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Nonsense_Mutation	SNP	98705136	98705136	LCOR	10	C	C	T	17
OR4C12	283093	broad.mit.edu	36	11	49960046	49960046	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	49960046	49960046	OR4C12	11	T	T	G	59
OR5M3	219482	broad.mit.edu	36	11	55994055	55994055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	55994055	55994055	OR5M3	11	G	G	A	36
RIN1	9610	broad.mit.edu	36	11	65857419	65857419	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	65857419	65857419	RIN1	11	G	G	C	43
TCIRG1	10312	broad.mit.edu	36	11	67569077	67569077	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	67569077	67569077	TCIRG1	11	G	G	T	38
MAML2	84441	broad.mit.edu	36	11	95464840	95464840	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	95464840	95464840	MAML2	11	G	G	T	33
CASP5	838	broad.mit.edu	36	11	104383020	104383020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	104383020	104383020	CASP5	11	G	G	A	40
DPAGT1	1798	broad.mit.edu	36	11	118476625	118476625	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	118476625	118476625	DPAGT1	11	A	A	G	1
CBL	867	broad.mit.edu	36	11	118653681	118653681	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	118653681	118653681	CBL	11	T	T	C	64
EPS8	2059	broad.mit.edu	36	12	15709972	15709972	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	15709972	15709972	EPS8	12	C	C	G	28
KIF21A	55605	broad.mit.edu	36	12	38020341	38020341	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	38020341	38020341	KIF21A	12	G	G	A	36
C14orf169	79697	broad.mit.edu	36	14	73028361	73028361	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	73028361	73028361	C14orf169	14	T	T	C	55
CCDC88C	440193	broad.mit.edu	36	14	90846027	90846028	+	Missense_Mutation	DNP	CA	CA	TG	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	DNP	90846027	90846028	CCDC88C	14	CA	CA	TG	29
KIAA1024	23251	broad.mit.edu	36	15	77536964	77536964	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	77536964	77536964	KIAA1024	15	G	G	A	40
SRRM2	23524	broad.mit.edu	36	16	2746459	2746459	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	2746459	2746459	SRRM2	16	T	T	G	59
DNAJA3	9093	broad.mit.edu	36	16	4433164	4433164	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	4433164	4433164	DNAJA3	16	C	C	T	25
CLEC16A	23274	broad.mit.edu	36	16	11179928	11179928	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	11179928	11179928	CLEC16A	16	C	C	A	18
FOXF1	2294	broad.mit.edu	36	16	85104032	85104032	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	85104032	85104032	FOXF1	16	G	G	A	42
FOXF1	2294	broad.mit.edu	36	16	85104034	85104036	+	Missense_Mutation	TNP	ATC	ATC	TGT	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	TNP	85104034	85104036	FOXF1	16	ATC	ATC	TGT	8
ACLY	47	broad.mit.edu	36	17	37323652	37323652	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	37323652	37323652	ACLY	17	T	T	A	51
STAT5A	6776	broad.mit.edu	36	17	37713789	37713789	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	37713789	37713789	STAT5A	17	C	C	G	18
PRR11	55771	broad.mit.edu	36	17	54633755	54633755	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	54633755	54633755	PRR11	17	G	G	A	34
BRIP1	83990	broad.mit.edu	36	17	57208692	57208692	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	57208692	57208692	BRIP1	17	G	G	A	44
ACE	1636	broad.mit.edu	36	17	58914644	58914644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	58914644	58914644	ACE	17	T	T	A	49
MUC16	94025	broad.mit.edu	36	19	8879494	8879494	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	8879494	8879494	MUC16	19	G	G	T	48
C19orf57	79173	broad.mit.edu	36	19	13861722	13861722	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	13861722	13861722	C19orf57	19	C	C	G	28
ZNF91	7644	broad.mit.edu	36	19	23337260	23337260	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	23337260	23337260	ZNF91	19	G	G	T	48
ZNF285	26974	broad.mit.edu	36	19	49582595	49582595	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	49582595	49582595	ZNF285	19	C	C	T	19
MYBPC2	4606	broad.mit.edu	36	19	55650245	55650245	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	55650245	55650245	MYBPC2	19	G	G	A	33
KCNH7	90134	broad.mit.edu	36	2	162988192	162988192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	162988192	162988192	KCNH7	2	T	T	C	54
GRB14	2888	broad.mit.edu	36	2	165184567	165184567	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	165184567	165184567	GRB14	2	T	T	A	56
SCN1A	6323	broad.mit.edu	36	2	166600990	166600990	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	166600990	166600990	SCN1A	2	T	T	A	62
TTN	7273	broad.mit.edu	36	2	179137459	179137459	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	179137459	179137459	TTN	2	G	G	A	39
SP140	11262	broad.mit.edu	36	2	230857369	230857369	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	230857369	230857369	SP140	2	T	T	C	51
CSRP2BP	57325	broad.mit.edu	36	20	18113251	18113251	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	18113251	18113251	CSRP2BP	20	G	G	C	45
NCOA3	8202	broad.mit.edu	36	20	45698580	45698580	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	45698580	45698580	NCOA3	20	G	G	A	34
BCAS4	55653	broad.mit.edu	36	20	48926541	48926541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	48926541	48926541	BCAS4	20	C	C	T	31
C20orf177	63939	broad.mit.edu	36	20	57953240	57953240	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	57953240	57953240	C20orf177	20	A	A	T	11
USP25	29761	broad.mit.edu	36	21	16172057	16172057	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	16172057	16172057	USP25	21	C	C	T	29
KRTAP24-1	643803	broad.mit.edu	36	21	30576926	30576926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	30576926	30576926	KRTAP24-1	21	C	C	T	23
WDR4	10785	broad.mit.edu	36	21	43145494	43145494	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Nonsense_Mutation	SNP	43145494	43145494	WDR4	21	C	C	A	29
NF2	4771	broad.mit.edu	36	22	28384240	28384240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	28384240	28384240	NF2	22	A	A	G	14
MYH9	4627	broad.mit.edu	36	22	35046799	35046799	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	35046799	35046799	MYH9	22	C	C	G	28
SUSD5	26032	broad.mit.edu	36	3	33170090	33170090	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	33170090	33170090	SUSD5	3	G	G	A	35
SPATA18	132671	broad.mit.edu	36	4	52633059	52633059	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	52633059	52633059	SPATA18	4	G	G	A	33
PCDHGA1	56114	broad.mit.edu	36	5	140691540	140691540	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	140691540	140691540	PCDHGA1	5	A	A	C	16
PCDHGA7	56108	broad.mit.edu	36	5	140744874	140744874	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	140744874	140744874	PCDHGA7	5	G	G	T	43
PCDHGB7	56099	broad.mit.edu	36	5	140778821	140778821	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	140778821	140778821	PCDHGB7	5	T	T	G	53
SLC35B2	347734	broad.mit.edu	36	6	44331028	44331028	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	44331028	44331028	SLC35B2	6	G	G	C	33
LMBRD1	55788	broad.mit.edu	36	6	70556916	70556916	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	70556916	70556916	LMBRD1	6	G	G	A	48
EGFR	1956	broad.mit.edu	36	7	55177577	55177577	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	55177577	55177577	EGFR	7	T	T	C	64
DUSP26	78986	broad.mit.edu	36	8	33569153	33569153	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	33569153	33569153	DUSP26	8	G	G	T	39
PXDNL	137902	broad.mit.edu	36	8	52550145	52550145	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	52550145	52550145	PXDNL	8	A	A	G	16
EPPK1	83481	broad.mit.edu	36	8	145014470	145014470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	145014470	145014470	EPPK1	8	C	C	G	27
KDM4C	23081	broad.mit.edu	36	9	7039128	7039128	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	7039128	7039128	KDM4C	9	A	A	T	3
FREM1	158326	broad.mit.edu	36	9	14832569	14832569	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	14832569	14832569	FREM1	9	C	C	G	19
PTCH1	5727	broad.mit.edu	36	9	97249263	97249263	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	97249263	97249263	PTCH1	9	G	G	T	47
KIAA0649	9858	broad.mit.edu	36	9	137516351	137516351	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Silent	SNP	137516351	137516351	KIAA0649	9	G	G	T	43
FAM48B2	170067	broad.mit.edu	36	X	24239592	24239592	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	24239592	24239592	FAM48B2	23	A	A	T	1
ZXDB	158586	broad.mit.edu	36	X	57636368	57636368	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	57636368	57636368	ZXDB	23	G	G	A	37
BRWD3	254065	broad.mit.edu	36	X	79832149	79832149	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	79832149	79832149	BRWD3	23	A	A	C	14
AFF2	2334	broad.mit.edu	36	X	147845064	147845064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2293-01	Broad	Missense_Mutation	SNP	147845064	147845064	AFF2	23	C	C	T	23
KBTBD7	84078	broad.mit.edu	36	13	40666107	40666111	+	Frame_Shift_Del	DEL	AAGTA	-	AAGTA	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2293-01	Broad	Frame_Shift_Del	DEL	40666107	40666111	KBTBD7	13	AAGTA	-	AAGTA	9
TP53	7157	broad.mit.edu	36	17	7519200	7519200	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2293-01	Broad	Frame_Shift_Del	DEL	7519200	7519200	TP53	17	G	-	G	39
POTEE	445582	broad.mit.edu	36	2	131692496	131692497	+	Frame_Shift_Del	DEL	AT	-	AT	novel	Unknown	TCGA-24-2293-01	TCGA-24-2293-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2293-01	Broad	Frame_Shift_Del	DEL	131692496	131692497	POTEE	2	AT	-	AT	8
