Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARHGEF10L	55160	broad.mit.edu	36	1	17886718	17886718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	17886718	17886718	ARHGEF10L	1	G	G	A	39
ZNF648	127665	broad.mit.edu	36	1	180293674	180293674	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	180293674	180293674	ZNF648	1	T	T	C	60
ASB13	79754	broad.mit.edu	36	10	5723803	5723803	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	5723803	5723803	ASB13	10	C	C	A	30
TCERG1L	256536	broad.mit.edu	36	10	132996519	132996519	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	132996519	132996519	TCERG1L	10	C	C	T	23
B4GALNT4	338707	broad.mit.edu	36	11	366331	366331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	366331	366331	B4GALNT4	11	T	T	A	62
OR10A4	283297	broad.mit.edu	36	11	6854698	6854698	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	6854698	6854698	OR10A4	11	A	A	T	12
OR4A15	81328	broad.mit.edu	36	11	54892040	54892040	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	54892040	54892040	OR4A15	11	C	C	A	17
OR4S2	219431	broad.mit.edu	36	11	55175361	55175361	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	55175361	55175361	OR4S2	11	C	C	T	23
TIRAP	114609	broad.mit.edu	36	11	125668158	125668158	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	125668158	125668158	TIRAP	11	G	G	A	40
TRHDE	29953	broad.mit.edu	36	12	71179671	71179671	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	71179671	71179671	TRHDE	12	G	G	A	38
LPAR6	10161	broad.mit.edu	36	13	47884114	47884114	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	47884114	47884114	LPAR6	13	T	T	G	59
TGM1	7051	broad.mit.edu	36	14	23793822	23793822	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	23793822	23793822	TGM1	14	A	A	G	3
SPTB	6710	broad.mit.edu	36	14	64330975	64330975	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	64330975	64330975	SPTB	14	G	G	C	47
ZFYVE26	23503	broad.mit.edu	36	14	67334190	67334190	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	67334190	67334190	ZFYVE26	14	G	G	A	40
SEMA4B	10509	broad.mit.edu	36	15	88561767	88561767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	88561767	88561767	SEMA4B	15	G	G	A	40
SYNM	23336	broad.mit.edu	36	15	97487291	97487291	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	97487291	97487291	SYNM	15	G	G	A	39
CNTNAP4	85445	broad.mit.edu	36	16	75126959	75126959	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Silent	SNP	75126959	75126959	CNTNAP4	16	A	A	G	10
C17orf68	80169	broad.mit.edu	36	17	8080294	8080294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	8080294	8080294	C17orf68	17	C	C	T	27
CHMP1B	57132	broad.mit.edu	36	18	11841695	11841695	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	11841695	11841695	CHMP1B	18	C	C	T	27
ZNF101	94039	broad.mit.edu	36	19	19652053	19652053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	19652053	19652053	ZNF101	19	G	G	A	39
CCT4	10575	broad.mit.edu	36	2	61952835	61952835	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	61952835	61952835	CCT4	2	C	C	A	24
IL1RL1	9173	broad.mit.edu	36	2	102325147	102325147	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	102325147	102325147	IL1RL1	2	G	G	A	39
MAP2	4133	broad.mit.edu	36	2	210267400	210267400	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	210267400	210267400	MAP2	2	A	A	G	11
LIPI	149998	broad.mit.edu	36	21	14483549	14483549	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	14483549	14483549	LIPI	21	A	A	G	4
STAG1	10274	broad.mit.edu	36	3	137805986	137805986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	137805986	137805986	STAG1	3	C	C	T	31
APOD	347	broad.mit.edu	36	3	196777212	196777212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	196777212	196777212	APOD	3	G	G	T	36
NAA15	80155	broad.mit.edu	36	4	140500442	140500442	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Nonsense_Mutation	SNP	140500442	140500442	NAA15	4	C	C	G	17
TBC1D9	23158	broad.mit.edu	36	4	141774620	141774620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	141774620	141774620	TBC1D9	4	C	C	T	27
ADAMTS16	170690	broad.mit.edu	36	5	5371299	5371299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	5371299	5371299	ADAMTS16	5	C	C	T	28
MEF2C	4208	broad.mit.edu	36	5	88063386	88063386	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1321-01	Broad	Silent	SNP	88063386	88063386	MEF2C	5	G	G	T	43
FAM81B	153643	broad.mit.edu	36	5	94811667	94811667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	94811667	94811667	FAM81B	5	G	G	A	47
PCDHB5	26167	broad.mit.edu	36	5	140495855	140495855	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	140495855	140495855	PCDHB5	5	G	G	C	42
AIM1	202	broad.mit.edu	36	6	107074569	107074569	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	107074569	107074569	AIM1	6	A	A	C	1
PPP1R3A	5506	broad.mit.edu	36	7	113309380	113309380	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	113309380	113309380	PPP1R3A	7	C	C	A	32
LPL	4023	broad.mit.edu	36	8	19856136	19856136	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	19856136	19856136	LPL	8	G	G	C	41
ZFAND1	79752	broad.mit.edu	36	8	82788800	82788800	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Nonsense_Mutation	SNP	82788800	82788800	ZFAND1	8	G	G	A	40
TOPORS	10210	broad.mit.edu	36	9	32532101	32532101	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1321-01	Broad	Nonsense_Mutation	SNP	32532101	32532101	TOPORS	9	C	C	A	31
TCEAL6	158931	broad.mit.edu	36	X	101282848	101282848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	101282848	101282848	TCEAL6	23	C	C	T	27
KIAA1210	57481	broad.mit.edu	36	X	118105348	118105348	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1321-01	Broad	Silent	SNP	118105348	118105348	KIAA1210	23	C	C	T	28
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-1321-01	Broad	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	G	A	38
SFRP5	6425	broad.mit.edu	36	10	99517249	99517275	+	Nonstop_Mutation	DEL	GAGGAGTGCCCTTCAGTGGGGCTCTGC	-	GAGGAGTGCCCTTCAGTGGGGCTCTGC	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-1321-01	Broad	Nonstop_Mutation	DEL	99517249	99517275	SFRP5	10	GAGGAGTGCCCTTCAGTGGGGCTCTGC	-	GAGGAGTGCCCTTCAGTGGGGCTCTGC	41
RAB11FIP1	80223	broad.mit.edu	36	8	37876007	37876008	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-25-1321-01	TCGA-25-1321-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-1321-01	Broad	Frame_Shift_Ins	INS	37876007	37876008	RAB11FIP1	8	-	C	-	46
