Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
AJAP1	55966	broad.mit.edu	36	1	4671908	4671908	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	4671908	4671908	AJAP1	1	G	G	A	38
PGD	5226	broad.mit.edu	36	1	10400053	10400053	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	10400053	10400053	PGD	1	C	C	G	29
MAPK8IP1	9479	broad.mit.edu	36	11	45882247	45882247	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	45882247	45882247	MAPK8IP1	11	A	A	G	16
MBD6	114785	broad.mit.edu	36	12	56206062	56206062	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	56206062	56206062	MBD6	12	C	C	G	22
OR4N2	390429	broad.mit.edu	36	14	19365760	19365760	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	19365760	19365760	OR4N2	14	C	C	T	25
MYH7	4625	broad.mit.edu	36	14	22965067	22965067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	22965067	22965067	MYH7	14	C	C	T	27
LRFN5	145581	broad.mit.edu	36	14	41425761	41425761	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	41425761	41425761	LRFN5	14	T	T	A	52
DNAJA3	9093	broad.mit.edu	36	16	4431521	4431521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	4431521	4431521	DNAJA3	16	G	G	A	37
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	39
ARHGEF18	23370	broad.mit.edu	36	19	7412889	7412889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	7412889	7412889	ARHGEF18	19	C	C	T	19
ZNF324B	388569	broad.mit.edu	36	19	63657489	63657489	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	63657489	63657489	ZNF324B	19	C	C	T	22
TPO	7173	broad.mit.edu	36	2	1467407	1467407	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	1467407	1467407	TPO	2	C	C	T	30
SDC1	6382	broad.mit.edu	36	2	20267222	20267222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	20267222	20267222	SDC1	2	G	G	A	47
PTCD3	55037	broad.mit.edu	36	2	86205641	86205641	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	86205641	86205641	PTCD3	2	C	C	T	19
SGOL2	151246	broad.mit.edu	36	2	201145883	201145883	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	201145883	201145883	SGOL2	2	C	C	G	17
IQCA1	79781	broad.mit.edu	36	2	237060261	237060261	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	237060261	237060261	IQCA1	2	G	G	A	40
SH3D19	152503	broad.mit.edu	36	4	152268306	152268306	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	152268306	152268306	SH3D19	4	T	T	G	56
THBS2	7058	broad.mit.edu	36	6	169392752	169392752	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Splice_Site_SNP	SNP	169392752	169392752	THBS2	6	C	C	T	18
GPR141	353345	broad.mit.edu	36	7	37747434	37747434	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	37747434	37747434	GPR141	7	G	G	A	40
PCM1	5108	broad.mit.edu	36	8	17916392	17916392	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	17916392	17916392	PCM1	8	T	T	C	55
C8orf58	541565	broad.mit.edu	36	8	22514410	22514410	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	22514410	22514410	C8orf58	8	C	C	A	23
VPS13B	157680	broad.mit.edu	36	8	100935634	100935634	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	100935634	100935634	VPS13B	8	A	A	G	16
DEPDC6	64798	broad.mit.edu	36	8	120955374	120955374	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	120955374	120955374	DEPDC6	8	C	C	G	18
S1PR3	1903	broad.mit.edu	36	9	90806353	90806353	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	90806353	90806353	S1PR3	9	A	A	G	4
HABP4	22927	broad.mit.edu	36	9	98260549	98260549	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	98260549	98260549	HABP4	9	G	G	A	46
OR1L1	26737	broad.mit.edu	36	9	124464064	124464064	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Silent	SNP	124464064	124464064	OR1L1	9	G	G	A	45
ENG	2022	broad.mit.edu	36	9	129627395	129627395	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2409-01	Broad	Missense_Mutation	SNP	129627395	129627395	ENG	9	A	A	G	11
APOB	338	broad.mit.edu	36	2	21079460	21079484	+	Frame_Shift_Del	DEL	CTCAGCATTGTTCTGCAGATTTCTT	-	CTCAGCATTGTTCTGCAGATTTCTT	novel	Unknown	TCGA-25-2409-01	TCGA-25-2409-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-2409-01	Broad	Frame_Shift_Del	DEL	21079460	21079484	APOB	2	CTCAGCATTGTTCTGCAGATTTCTT	-	CTCAGCATTGTTCTGCAGATTTCTT	20
