| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues793995553252112696.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues5542628870971381920.tsv |
| GDAC_MergeDataFiles2 output filename | STAD |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
| Execution Times: | |
| Submitted: | 21:39:19 13-07-12 |
| Completed: | |
| Elapsed: | 00 hrs 56 mins 20 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 129121] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
| annotationid | methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
| sdrffilename | |
| datapathsfile | dependentsValues793995553252112696.tsv |
| Output Files: | |
| STAD.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 21:39:19 13-07-12 |
| Completed: | 21:40:34 13-07-12 |
| Elapsed: | 00 hrs 01 mins 14 secs |
step 2. GDAC_MergeDataFiles [id: 129122] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues5542628870971381920.tsv |
| output filename | STAD |
| row_column | column |
| num_headers | 1 |
| filetype | methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
| Output Files: | |
| STAD.methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 21:39:19 13-07-12 |
| Completed: | 22:35:36 13-07-12 |
| Elapsed: | 00 hrs 56 mins 17 secs |