GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1277792150580345204.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues745333713999233897.tsv |
GDAC_MergeDataFiles2 output filename | STAD |
GDAC_MergeDataFiles2 row_column | column |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
Execution Times: | |
Submitted: | 21:39:23 13-07-12 |
Completed: | |
Elapsed: | 00 hrs 57 mins 01 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 129124] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
sdrffilename | |
datapathsfile | dependentsValues1277792150580345204.tsv |
Output Files: | |
STAD.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 21:39:23 13-07-12 |
Completed: | 21:40:36 13-07-12 |
Elapsed: | 00 hrs 01 mins 12 secs |
step 2. GDAC_MergeDataFiles [id: 129125] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues745333713999233897.tsv |
output filename | STAD |
row_column | column |
num_headers | 1 |
filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
Output Files: | |
STAD.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt | |
stdout.txt |
Execution Times: | |
Submitted: | 21:39:24 13-07-12 |
Completed: | 22:36:23 13-07-12 |
Elapsed: | 00 hrs 56 mins 59 secs |