GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
GDAC_CreateMergeDataFilesSDRF1 annotationid | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data |
GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues4390797635726668443.tsv |
GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues6036885410381368504.tsv |
GDAC_MergeDataFiles2 output filename | STAD |
GDAC_MergeDataFiles2 row_column | row |
GDAC_MergeDataFiles2 num_headers | 1 |
GDAC_MergeDataFiles2 filetype | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data |
Execution Times: | |
Submitted: | 21:39:35 13-07-12 |
Completed: | |
Elapsed: | 00 hrs 56 mins 16 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 129130] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
annotationid | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data |
sdrffilename | |
datapathsfile | dependentsValues4390797635726668443.tsv |
Output Files: | |
STAD.merger.sdrf.txt | |
dcc_archive.properties | |
.lsf.out | |
dcc_archive_manifest.tsv | |
stdout.txt |
Execution Times: | |
Submitted: | 21:39:35 13-07-12 |
Completed: | 21:40:50 13-07-12 |
Elapsed: | 00 hrs 01 mins 14 secs |
step 2. GDAC_MergeDataFiles [id: 129131] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
inputfilelist filename | dependentsValues6036885410381368504.tsv |
output filename | STAD |
row_column | row |
num_headers | 1 |
filetype | mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data |
Output Files: | |
STAD.mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data.data.txt | |
stdout.txt |
Execution Times: | |
Submitted: | 21:39:35 13-07-12 |
Completed: | 22:35:44 13-07-12 |
Elapsed: | 00 hrs 56 mins 08 secs |