| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues6254700539608048240.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues6643286636407696292.tsv |
| GDAC_MergeDataFiles2 output filename | STAD |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data |
| Execution Times: | |
| Submitted: | 21:39:45 13-07-12 |
| Completed: | |
| Elapsed: | 00 hrs 55 mins 52 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 129139] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_07_07__00_00_03.samplestamp.txt |
| annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data |
| sdrffilename | |
| datapathsfile | dependentsValues6254700539608048240.tsv |
| Output Files: | |
| STAD.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 21:39:46 13-07-12 |
| Completed: | 21:40:20 13-07-12 |
| Elapsed: | 00 hrs 00 mins 34 secs |
step 2. GDAC_MergeDataFiles [id: 129140] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues6643286636407696292.tsv |
| output filename | STAD |
| row_column | column |
| num_headers | 1 |
| filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data |
| Output Files: | |
| STAD.rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 21:39:46 13-07-12 |
| Completed: | 22:35:34 13-07-12 |
| Elapsed: | 00 hrs 55 mins 48 secs |