| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_07_25__00_00_09.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues7371840027306361805.tsv |
| GDAC_DataMerger2 output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| GDAC_DataMerger2 dataPaths | dependentsValues6767698857986408327.tsv |
| Execution Times: | |
| Submitted: | 13:17:19 25-07-12 |
| Completed: | |
| Elapsed: | 00 hrs 00 mins 42 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 135424] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.BRCA.2012_07_25__00_00_09.samplestamp.txt |
| annotationid | protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data |
| sdrffilename | |
| datapathsfile | dependentsValues7371840027306361805.tsv |
| Output Files: | |
| BRCA.merger.sdrf.txt | |
| dcc_archive.properties | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 13:17:19 25-07-12 |
| Completed: | 13:17:31 25-07-12 |
| Elapsed: | 00 hrs 00 mins 11 secs |
step 2. GDAC_DataMerger [id: 135425] Merge a list of files into a single file. Validate that all the files have the same columns and row names.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00481:4
| output | BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt |
| dataPaths | dependentsValues6767698857986408327.tsv |
| Output Files: | |
| .lsf.out | |
| BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt | |
| Execution Times: | |
| Submitted: | 13:17:19 25-07-12 |
| Completed: | 13:18:00 25-07-12 |
| Elapsed: | 00 hrs 00 mins 41 secs |