Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANO3	63982	hgsc.bcm.edu	37	11	26678014	26678014	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112116594	112116594	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112173370	112173370	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP15	55843	hgsc.bcm.edu	37	2	144525663	144525663	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCAS3	54828	hgsc.bcm.edu	37	17	59118234	59118234	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BIRC6	57448	hgsc.bcm.edu	37	2	32690189	32690189	+	Silent	SNP	A	A	G	rs35682129	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BMP2K	55589	hgsc.bcm.edu	37	4	79747216	79747216	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C16orf72	29035	hgsc.bcm.edu	37	16	9196899	9196899	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C3orf39	84892	hgsc.bcm.edu	37	3	43122202	43122202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C3orf72	401089	hgsc.bcm.edu	37	3	138668458	138668467	+	Frame_Shift_Del	DEL	GGCATTCGAA	GGCATTCGAA	-	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	GGCATTCGAA	GGCATTCGAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC123	84902	hgsc.bcm.edu	37	19	33422395	33422395	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDCP1	64866	hgsc.bcm.edu	37	3	45127187	45127187	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DEPDC1	55635	hgsc.bcm.edu	37	1	68944832	68944832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH7	56171	hgsc.bcm.edu	37	2	196729281	196729281	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK8	81704	hgsc.bcm.edu	37	9	463547	463547	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JMJD1C	221037	hgsc.bcm.edu	37	10	64936163	64936163	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUSK	4593	hgsc.bcm.edu	37	9	113459745	113459745	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYOCD	93649	hgsc.bcm.edu	37	17	12656122	12656122	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29684285	29684285	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRCAM	4897	hgsc.bcm.edu	37	7	107799943	107799943	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STARD3NL	83930	hgsc.bcm.edu	37	7	38256634	38256634	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THRAP3	9967	hgsc.bcm.edu	37	1	36762273	36762273	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPRKB	51002	hgsc.bcm.edu	37	2	73961607	73961607	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRPC6	7225	hgsc.bcm.edu	37	11	101340201	101340201	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179435391	179435391	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YWHAE	7531	hgsc.bcm.edu	37	17	1265285	1265285	+	Silent	SNP	C	C	T	rs34137556	unknown	TCGA-B4-5378-01A-01D-1501-10	TCGA-B4-5378-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
