Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANKRD44	91526	hgsc.bcm.edu	37	2	197954719	197954719	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASPH	444	hgsc.bcm.edu	37	8	62577970	62577970	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A2	23400	hgsc.bcm.edu	37	1	17318322	17318322	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRD4	23476	hgsc.bcm.edu	37	19	15366320	15366320	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA1D	776	hgsc.bcm.edu	37	3	53845146	53845146	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC88B	283234	hgsc.bcm.edu	37	11	64121227	64121227	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL15A1	1306	hgsc.bcm.edu	37	9	101748184	101748184	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CPSF2	53981	hgsc.bcm.edu	37	14	92604675	92604675	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSF1R	1436	hgsc.bcm.edu	37	5	149436911	149436911	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM83G	644815	hgsc.bcm.edu	37	17	18882881	18882881	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FGD1	2245	hgsc.bcm.edu	37	X	54475346	54475346	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLX	3142	hgsc.bcm.edu	37	1	221055659	221055659	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LGTN	1939	hgsc.bcm.edu	37	1	206776435	206776435	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MICAL3	57553	hgsc.bcm.edu	37	22	18382260	18382260	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP153	9972	hgsc.bcm.edu	37	6	17637570	17637570	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHH1	57475	hgsc.bcm.edu	37	14	68040063	68040063	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP6R1	22870	hgsc.bcm.edu	37	19	55751267	55751267	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRDM5	11107	hgsc.bcm.edu	37	4	121631520	121631520	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRSS16	10279	hgsc.bcm.edu	37	6	27216901	27216901	+	Silent	SNP	A	A	C	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTCD1	26024	hgsc.bcm.edu	37	7	99022803	99022803	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SDCCAG1	9147	hgsc.bcm.edu	37	14	50312885	50312885	+	Nonsense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SDR9C7	121214	hgsc.bcm.edu	37	12	57323228	57323228	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SERPINI1	5274	hgsc.bcm.edu	37	3	167508176	167508176	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIGD2	166815	hgsc.bcm.edu	37	4	90034133	90034133	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TLR8	51311	hgsc.bcm.edu	37	X	12937473	12937473	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4346-01A-01D-1366-10	TCGA-BP-4346-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
