Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC5	10057	hgsc.bcm.edu	37	3	183655834	183655834	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EDEM3	80267	hgsc.bcm.edu	37	1	184663341	184663341	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GCNT2	2651	hgsc.bcm.edu	37	6	10557023	10557023	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IARS2	55699	hgsc.bcm.edu	37	1	220316384	220316384	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1529	57653	hgsc.bcm.edu	37	9	100079448	100079448	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK4	9622	hgsc.bcm.edu	37	19	51411978	51411978	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NMBR	4829	hgsc.bcm.edu	37	6	142399949	142399949	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE3A	5139	hgsc.bcm.edu	37	12	20803458	20803458	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDGFRA	5156	hgsc.bcm.edu	37	4	55141031	55141031	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPIL4	85313	hgsc.bcm.edu	37	6	149826604	149826604	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRPSAP2	5636	hgsc.bcm.edu	37	17	18814497	18814497	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM2	23670	hgsc.bcm.edu	37	9	74360416	74360416	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TOM1L2	146691	hgsc.bcm.edu	37	17	17810782	17810782	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TP53	7157	hgsc.bcm.edu	37	17	7577581	7577581	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138732448	138732448	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4798-01A-01D-1373-10	TCGA-BP-4798-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
