Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC9	10060	hgsc.bcm.edu	37	12	22065833	22065833	+	Silent	SNP	G	G	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AFAP1L2	84632	hgsc.bcm.edu	37	10	116057098	116057098	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANGPT1	284	hgsc.bcm.edu	37	8	108334182	108334182	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD27	84079	hgsc.bcm.edu	37	19	33133044	33133044	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASAP3	55616	hgsc.bcm.edu	37	1	23756377	23756377	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C11orf49	79096	hgsc.bcm.edu	37	11	47185748	47185748	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C17orf74	201243	hgsc.bcm.edu	37	17	7330114	7330114	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3orf27	23434	hgsc.bcm.edu	37	3	128292319	128292320	+	Frame_Shift_Del	DEL	TC	TC	-	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC160	347475	hgsc.bcm.edu	37	X	133378953	133378953	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNGA4	1262	hgsc.bcm.edu	37	11	6262905	6262905	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX31	64794	hgsc.bcm.edu	37	9	135538026	135538026	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DYDC1	143241	hgsc.bcm.edu	37	10	82112316	82112316	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM179A	165186	hgsc.bcm.edu	37	2	29256422	29256422	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXP2	93986	hgsc.bcm.edu	37	7	114284748	114284748	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FRMPD1	22844	hgsc.bcm.edu	37	9	37740099	37740099	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GEMIN5	25929	hgsc.bcm.edu	37	5	154271054	154271054	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR98	84059	hgsc.bcm.edu	37	5	90000251	90000252	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGSF10	285313	hgsc.bcm.edu	37	3	151160902	151160902	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LBH	81606	hgsc.bcm.edu	37	2	30480413	30480413	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MPDZ	8777	hgsc.bcm.edu	37	9	13192294	13192294	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP160	23279	hgsc.bcm.edu	37	11	47861527	47861527	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OSBPL10	114884	hgsc.bcm.edu	37	3	31712424	31712424	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
P2RY10	27334	hgsc.bcm.edu	37	X	78216453	78216453	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHH3	79990	hgsc.bcm.edu	37	17	40825443	40825443	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POR	5447	hgsc.bcm.edu	37	7	75614139	75614139	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPM1B	5495	hgsc.bcm.edu	37	2	44429133	44429133	+	Silent	SNP	T	T	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP4R4	57718	hgsc.bcm.edu	37	14	94697034	94697034	+	Silent	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTCHD3	374308	hgsc.bcm.edu	37	10	27688016	27688016	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIN1	9610	hgsc.bcm.edu	37	11	66100043	66100043	+	Missense_Mutation	SNP	G	G	A	rs2282532	unknown	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPEG	10290	hgsc.bcm.edu	37	2	220342464	220342464	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF1L	138474	hgsc.bcm.edu	37	9	32634567	32634567	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRO	7216	hgsc.bcm.edu	37	X	54957281	54957281	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TULP3	7289	hgsc.bcm.edu	37	12	3047337	3047337	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13B	157680	hgsc.bcm.edu	37	8	100133693	100133693	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF214	7761	hgsc.bcm.edu	37	11	7022631	7022631	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4870-01A-01D-1373-10	TCGA-CJ-4870-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
