Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANO4	121601	hgsc.bcm.edu	37	12	101505399	101505399	+	Silent	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGEF10	9639	hgsc.bcm.edu	37	8	1881967	1881967	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARSD	414	hgsc.bcm.edu	37	X	2835993	2835993	+	Silent	SNP	G	G	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARSD	414	hgsc.bcm.edu	37	X	2835995	2835995	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BNC1	646	hgsc.bcm.edu	37	15	83933199	83933199	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHML	1122	hgsc.bcm.edu	37	1	241798250	241798250	+	Silent	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRYAA	1409	hgsc.bcm.edu	37	21	44589294	44589294	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSMD1	64478	hgsc.bcm.edu	37	8	3046465	3046465	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CT47A6	728062	hgsc.bcm.edu	37	X	120094375	120094375	+	Silent	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYP4F8	11283	hgsc.bcm.edu	37	19	15728850	15728850	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DMD	1756	hgsc.bcm.edu	37	X	31496341	31496341	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DSCAML1	57453	hgsc.bcm.edu	37	11	117299382	117299382	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DST	667	hgsc.bcm.edu	37	6	56418199	56418199	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ELK3	2004	hgsc.bcm.edu	37	12	96641322	96641322	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERBB2IP	55914	hgsc.bcm.edu	37	5	65321792	65321792	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HDAC10	83933	hgsc.bcm.edu	37	22	50685379	50685379	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSFX1	51402	hgsc.bcm.edu	37	X	148856615	148856615	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HUWE1	10075	hgsc.bcm.edu	37	X	53577912	53577912	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGF1	3479	hgsc.bcm.edu	37	12	102869464	102869464	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL17RC	84818	hgsc.bcm.edu	37	3	9974300	9974300	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNS3	3790	hgsc.bcm.edu	37	2	18113361	18113362	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LGR6	59352	hgsc.bcm.edu	37	1	202273686	202273686	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP2	4036	hgsc.bcm.edu	37	2	170003359	170003359	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MBTPS1	8720	hgsc.bcm.edu	37	16	84089720	84089720	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYH6	4624	hgsc.bcm.edu	37	14	23865529	23865529	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OGDH	4967	hgsc.bcm.edu	37	7	44687318	44687318	+	Silent	SNP	C	C	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGA4	56111	hgsc.bcm.edu	37	5	140735604	140735604	+	Nonsense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKDREJ	10343	hgsc.bcm.edu	37	22	46656257	46656257	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLR1C	9533	hgsc.bcm.edu	37	6	43489006	43489006	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAD23B	5887	hgsc.bcm.edu	37	9	110084347	110084348	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM19	9904	hgsc.bcm.edu	37	12	114397159	114397159	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAMM50	25813	hgsc.bcm.edu	37	22	44386258	44386258	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFRS18	25957	hgsc.bcm.edu	37	6	99858629	99858629	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFTPD	6441	hgsc.bcm.edu	37	10	81702585	81702585	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SHE	126669	hgsc.bcm.edu	37	1	154461799	154461799	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIPA1L1	26037	hgsc.bcm.edu	37	14	72055087	72055087	+	Silent	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTI1	9675	hgsc.bcm.edu	37	20	36641536	36641536	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF107	51427	hgsc.bcm.edu	37	7	64168486	64168486	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF333	84449	hgsc.bcm.edu	37	19	14829458	14829458	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF710	374655	hgsc.bcm.edu	37	15	90616441	90616441	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4862-01A-01D-1373-10	TCGA-CZ-4862-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
