Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
VPS13D	55187	broad.mit.edu	36	1	12480139	12480139	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Splice_Site_SNP	SNP	12480139	12480139	VPS13D	1	A	A	G	15
ACTL8	81569	broad.mit.edu	36	1	18024900	18024900	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Nonsense_Mutation	SNP	18024900	18024900	ACTL8	1	C	C	T	25
ZMYM6	9204	broad.mit.edu	36	1	35253011	35253011	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	35253011	35253011	ZMYM6	1	T	T	C	52
LHX8	431707	broad.mit.edu	36	1	75395266	75395266	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	75395266	75395266	LHX8	1	C	C	A	21
HSD3B2	3284	broad.mit.edu	36	1	119766472	119766472	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	119766472	119766472	HSD3B2	1	T	T	C	63
LINGO4	339398	broad.mit.edu	36	1	150040530	150040530	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	150040530	150040530	LINGO4	1	T	T	C	55
IVL	3713	broad.mit.edu	36	1	151149425	151149425	+	Silent	SNP	G	G	A	rs11205136	byCluster;by2Hit2Allele	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	151149425	151149425	IVL	1	G	G	A	39
KIAA1614	57710	broad.mit.edu	36	1	179153627	179153627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	179153627	179153627	KIAA1614	1	G	G	T	48
C1orf25	81627	broad.mit.edu	36	1	183379689	183379689	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	183379689	183379689	C1orf25	1	A	A	G	15
CUL2	8453	broad.mit.edu	36	10	35389826	35389826	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	35389826	35389826	CUL2	10	T	T	C	49
FAM13C	220965	broad.mit.edu	36	10	60753766	60753766	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	60753766	60753766	FAM13C	10	C	C	T	31
MYOF	26509	broad.mit.edu	36	10	95113795	95113795	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	95113795	95113795	MYOF	10	G	G	A	48
PLCE1	51196	broad.mit.edu	36	10	95781564	95781564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	95781564	95781564	PLCE1	10	C	C	T	17
CC2D2B	387707	broad.mit.edu	36	10	97781668	97781668	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	97781668	97781668	CC2D2B	10	A	A	C	4
DNTT	1791	broad.mit.edu	36	10	98054410	98054410	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	98054410	98054410	DNTT	10	G	G	T	42
UBQLN3	50613	broad.mit.edu	36	11	5486049	5486049	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	5486049	5486049	UBQLN3	11	G	G	A	48
DCHS1	8642	broad.mit.edu	36	11	6617809	6617809	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	6617809	6617809	DCHS1	11	A	A	T	15
OR5B2	390190	broad.mit.edu	36	11	57947077	57947077	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	57947077	57947077	OR5B2	11	C	C	A	24
NRXN2	9379	broad.mit.edu	36	11	64172824	64172824	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	64172824	64172824	NRXN2	11	C	C	T	31
GSTP1	2950	broad.mit.edu	36	11	67110474	67110474	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	67110474	67110474	GSTP1	11	G	G	T	45
KCNE3	10008	broad.mit.edu	36	11	73845994	73845994	+	Missense_Mutation	SNP	C	C	A	rs17221833	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	73845994	73845994	KCNE3	11	C	C	A	19
ALKBH8	91801	broad.mit.edu	36	11	106908244	106908244	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	106908244	106908244	ALKBH8	11	C	C	G	30
KIRREL3	84623	broad.mit.edu	36	11	125811947	125811947	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	125811947	125811947	KIRREL3	11	G	G	A	39
LRRC23	10233	broad.mit.edu	36	12	6885137	6885137	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	6885137	6885137	LRRC23	12	G	G	C	33
GUCY2C	2984	broad.mit.edu	36	12	14740583	14740583	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	14740583	14740583	GUCY2C	12	T	T	C	53
SOX5	6660	broad.mit.edu	36	12	23940208	23940208	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	23940208	23940208	SOX5	12	G	G	C	47
OR6C1	390321	broad.mit.edu	36	12	54001088	54001088	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	54001088	54001088	OR6C1	12	T	T	G	56
ARL11	115761	broad.mit.edu	36	13	49102630	49102630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	49102630	49102630	ARL11	13	G	G	T	44
MYO16	23026	broad.mit.edu	36	13	108502774	108502774	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	108502774	108502774	MYO16	13	A	A	G	10
PAPLN	89932	broad.mit.edu	36	14	72800793	72800793	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	72800793	72800793	PAPLN	14	A	A	G	8
SERPINA9	327657	broad.mit.edu	36	14	93999249	93999249	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	93999249	93999249	SERPINA9	14	C	C	A	29
ATP10A	57194	broad.mit.edu	36	15	23477097	23477097	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	23477097	23477097	ATP10A	15	C	C	A	27
MAP1A	4130	broad.mit.edu	36	15	41601496	41601496	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	41601496	41601496	MAP1A	15	G	G	A	40
FAM63B	54629	broad.mit.edu	36	15	56851602	56851602	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	56851602	56851602	FAM63B	15	G	G	A	41
UNC45A	55898	broad.mit.edu	36	15	89286832	89286832	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	89286832	89286832	UNC45A	15	C	C	T	29
TBL3	10607	broad.mit.edu	36	16	1964217	1964217	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	1964217	1964217	TBL3	16	C	C	T	25
MEFV	4210	broad.mit.edu	36	16	3233272	3233272	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	3233272	3233272	MEFV	16	T	T	G	59
NLRC3	197358	broad.mit.edu	36	16	3538756	3538756	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Splice_Site_SNP	SNP	3538756	3538756	NLRC3	16	T	T	C	53
MYH11	4629	broad.mit.edu	36	16	15783761	15783761	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	15783761	15783761	MYH11	16	G	G	A	40
ABCC11	85320	broad.mit.edu	36	16	46785294	46785294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	46785294	46785294	ABCC11	16	C	C	T	23
TRPV3	162514	broad.mit.edu	36	17	3374353	3374353	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	3374353	3374353	TRPV3	17	G	G	A	48
SLC2A4	6517	broad.mit.edu	36	17	7128314	7128314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	7128314	7128314	SLC2A4	17	G	G	C	43
DNAH9	1770	broad.mit.edu	36	17	11545237	11545237	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	11545237	11545237	DNAH9	17	C	C	A	20
MYOCD	93649	broad.mit.edu	36	17	12580341	12580341	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	12580341	12580341	MYOCD	17	C	C	T	29
NLE1	54475	broad.mit.edu	36	17	30484579	30484579	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	30484579	30484579	NLE1	17	C	C	A	18
ARL4D	379	broad.mit.edu	36	17	38832676	38832676	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	38832676	38832676	ARL4D	17	C	C	G	22
STXBP4	252983	broad.mit.edu	36	17	50418585	50418585	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	50418585	50418585	STXBP4	17	T	T	G	49
TUBD1	51174	broad.mit.edu	36	17	55292559	55292559	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	55292559	55292559	TUBD1	17	A	A	G	4
TSPAN10	83882	broad.mit.edu	36	17	77225421	77225421	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	77225421	77225421	TSPAN10	17	G	G	T	48
TGIF1	7050	broad.mit.edu	36	18	3446474	3446474	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	3446474	3446474	TGIF1	18	G	G	T	48
DSC1	1823	broad.mit.edu	36	18	26968040	26968040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	26968040	26968040	DSC1	18	G	G	A	33
INSR	3643	broad.mit.edu	36	19	7218483	7218483	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	7218483	7218483	INSR	19	G	G	T	48
RAB3D	9545	broad.mit.edu	36	19	11307127	11307127	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	11307127	11307127	RAB3D	19	G	G	A	44
SLC35E1	79939	broad.mit.edu	36	19	16538361	16538361	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	16538361	16538361	SLC35E1	19	G	G	A	41
KPTN	11133	broad.mit.edu	36	19	52675858	52675858	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	52675858	52675858	KPTN	19	G	G	A	33
CLEC11A	6320	broad.mit.edu	36	19	55920406	55920406	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	55920406	55920406	CLEC11A	19	A	A	C	8
NBAS	51594	broad.mit.edu	36	2	15247963	15247963	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	15247963	15247963	NBAS	2	T	T	A	51
APOB	338	broad.mit.edu	36	2	21083983	21083983	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	21083983	21083983	APOB	2	G	G	T	46
OTOF	9381	broad.mit.edu	36	2	26540401	26540401	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	26540401	26540401	OTOF	2	G	G	A	39
CIB4	130106	broad.mit.edu	36	2	26671623	26671623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	26671623	26671623	CIB4	2	C	C	T	17
ALK	238	broad.mit.edu	36	2	29996838	29996838	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	29996838	29996838	ALK	2	G	G	T	41
FANCL	55120	broad.mit.edu	36	2	58240432	58240432	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	58240432	58240432	FANCL	2	G	G	A	44
PUS10	150962	broad.mit.edu	36	2	61089571	61089571	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	61089571	61089571	PUS10	2	T	T	G	64
SCTR	6344	broad.mit.edu	36	2	119947568	119947568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	119947568	119947568	SCTR	2	C	C	A	18
IFIH1	64135	broad.mit.edu	36	2	162852935	162852935	+	Missense_Mutation	SNP	T	T	C	rs35207787	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	162852935	162852935	IFIH1	2	T	T	C	62
COBLL1	22837	broad.mit.edu	36	2	165259032	165259032	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	165259032	165259032	COBLL1	2	G	G	C	33
HNRNPA3	220988	broad.mit.edu	36	2	177790721	177790721	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	177790721	177790721	HNRNPA3	2	G	G	T	42
ZNF142	7701	broad.mit.edu	36	2	219217803	219217803	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	219217803	219217803	ZNF142	2	C	C	G	29
UGT1A3	54659	broad.mit.edu	36	2	234303353	234303353	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	234303353	234303353	UGT1A3	2	G	G	C	48
ACSS1	84532	broad.mit.edu	36	20	24959592	24959592	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	24959592	24959592	ACSS1	20	T	T	A	62
ASPHD2	57168	broad.mit.edu	36	22	25159725	25159725	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	25159725	25159725	ASPHD2	22	C	C	T	23
TBC1D10A	83874	broad.mit.edu	36	22	29030527	29030527	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	29030527	29030527	TBC1D10A	22	T	T	C	59
PISD	23761	broad.mit.edu	36	22	30345655	30345655	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	30345655	30345655	PISD	22	A	A	G	4
TCF20	6942	broad.mit.edu	36	22	40939690	40939690	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	40939690	40939690	TCF20	22	G	G	C	34
SBF1	6305	broad.mit.edu	36	22	49249688	49249688	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	49249688	49249688	SBF1	22	C	C	G	23
MITF	4286	broad.mit.edu	36	3	70096797	70096797	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	70096797	70096797	MITF	3	A	A	C	2
C3orf37	56941	broad.mit.edu	36	3	130506330	130506330	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	130506330	130506330	C3orf37	3	C	C	G	24
CHST2	9435	broad.mit.edu	36	3	144323520	144323520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	144323520	144323520	CHST2	3	C	C	T	28
VPS8	23355	broad.mit.edu	36	3	186068536	186068536	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	186068536	186068536	VPS8	3	A	A	G	11
TEC	7006	broad.mit.edu	36	4	47835491	47835491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	47835491	47835491	TEC	4	G	G	A	39
KIT	3815	broad.mit.edu	36	4	55299430	55299430	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	55299430	55299430	KIT	4	G	G	A	39
GK2	2712	broad.mit.edu	36	4	80547531	80547531	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	80547531	80547531	GK2	4	C	C	A	25
TNFAIP8	25816	broad.mit.edu	36	5	118756677	118756677	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	118756677	118756677	TNFAIP8	5	A	A	C	11
C5orf48	389320	broad.mit.edu	36	5	125999734	125999734	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	125999734	125999734	C5orf48	5	C	C	G	22
PCDHB2	56133	broad.mit.edu	36	5	140456591	140456591	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	140456591	140456591	PCDHB2	5	C	C	T	27
PCDHB7	56129	broad.mit.edu	36	5	140533502	140533502	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	140533502	140533502	PCDHB7	5	T	T	C	56
ZNF318	24149	broad.mit.edu	36	6	43414883	43414883	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	43414883	43414883	ZNF318	6	C	C	T	32
GSTA2	2939	broad.mit.edu	36	6	52729051	52729051	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	52729051	52729051	GSTA2	6	T	T	A	49
GARS	2617	broad.mit.edu	36	7	30622130	30622130	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	30622130	30622130	GARS	7	G	G	T	48
PPP1R9A	55607	broad.mit.edu	36	7	94665648	94665648	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	94665648	94665648	PPP1R9A	7	G	G	C	45
ZNF655	79027	broad.mit.edu	36	7	99008893	99008893	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	99008893	99008893	ZNF655	7	A	A	G	9
RINT1	60561	broad.mit.edu	36	7	104974656	104974656	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	104974656	104974656	RINT1	7	T	T	G	53
NDUFB2	4708	broad.mit.edu	36	7	140051180	140051180	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	140051180	140051180	NDUFB2	7	A	A	G	16
OR2F2	135948	broad.mit.edu	36	7	143263352	143263352	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	143263352	143263352	OR2F2	7	T	T	A	56
ZNF425	155054	broad.mit.edu	36	7	148432494	148432494	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	148432494	148432494	ZNF425	7	T	T	G	64
PAXIP1	22976	broad.mit.edu	36	7	154391719	154391719	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	154391719	154391719	PAXIP1	7	A	A	C	12
SNAI2	6591	broad.mit.edu	36	8	49995233	49995233	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	49995233	49995233	SNAI2	8	T	T	C	63
TMEM68	137695	broad.mit.edu	36	8	56831423	56831423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	56831423	56831423	TMEM68	8	T	T	C	61
IMPAD1	54928	broad.mit.edu	36	8	58041306	58041306	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	58041306	58041306	IMPAD1	8	G	G	C	34
MPDZ	8777	broad.mit.edu	36	9	13178816	13178816	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	13178816	13178816	MPDZ	9	C	C	A	30
ADAMTSL1	92949	broad.mit.edu	36	9	18494910	18494910	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	18494910	18494910	ADAMTSL1	9	C	C	T	27
KIAA1797	54914	broad.mit.edu	36	9	20730325	20730325	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	20730325	20730325	KIAA1797	9	T	T	C	57
IFNA4	3441	broad.mit.edu	36	9	21177176	21177176	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	21177176	21177176	IFNA4	9	G	G	A	35
COL15A1	1306	broad.mit.edu	36	9	100868987	100868987	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	100868987	100868987	COL15A1	9	G	G	T	46
RNF20	56254	broad.mit.edu	36	9	103346886	103346886	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Silent	SNP	103346886	103346886	RNF20	9	G	G	A	35
CEP110	11064	broad.mit.edu	36	9	122917289	122917289	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	122917289	122917289	CEP110	9	A	A	C	5
PIR	8544	broad.mit.edu	36	X	15407826	15407826	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	15407826	15407826	PIR	23	T	T	C	61
DMD	1756	broad.mit.edu	36	X	31075420	31075420	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	31075420	31075420	DMD	23	G	G	T	34
XAGE5	170627	broad.mit.edu	36	X	52860880	52860880	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Nonsense_Mutation	SNP	52860880	52860880	XAGE5	23	C	C	A	29
NKAP	79576	broad.mit.edu	36	X	118961340	118961340	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	118961340	118961340	NKAP	23	G	G	A	38
STAG2	10735	broad.mit.edu	36	X	123027771	123027771	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	123027771	123027771	STAG2	23	A	A	T	9
ODZ1	10178	broad.mit.edu	36	X	123603388	123603388	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	123603388	123603388	ODZ1	23	T	T	A	60
GPR112	139378	broad.mit.edu	36	X	135313105	135313105	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	135313105	135313105	GPR112	23	T	T	G	59
ATP11C	286410	broad.mit.edu	36	X	138729162	138729162	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Splice_Site_SNP	SNP	138729162	138729162	ATP11C	23	C	C	T	18
G6PD	2539	broad.mit.edu	36	X	153414085	153414085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2267-01	Broad	Missense_Mutation	SNP	153414085	153414085	G6PD	23	C	C	A	27
TP53	7157	broad.mit.edu	36	17	7517813	7517813	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-24-2267-01	TCGA-24-2267-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2267-01	Broad	Frame_Shift_Del	DEL	7517813	7517813	TP53	17	T	-	T	59
