Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
LY9	4063	broad.mit.edu	36	1	159050292	159050292	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	159050292	159050292	LY9	1	T	T	A	54
GPR158	57512	broad.mit.edu	36	10	25927870	25927870	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	25927870	25927870	GPR158	10	C	C	T	19
SVIL	6840	broad.mit.edu	36	10	29880010	29880010	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	29880010	29880010	SVIL	10	C	C	A	26
PCDH15	65217	broad.mit.edu	36	10	55625533	55625533	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	55625533	55625533	PCDH15	10	A	A	G	7
FAM35A	54537	broad.mit.edu	36	10	88901636	88901636	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	88901636	88901636	FAM35A	10	G	G	C	48
TAF5	6877	broad.mit.edu	36	10	105137817	105137817	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	105137817	105137817	TAF5	10	T	T	C	51
FANK1	92565	broad.mit.edu	36	10	127687025	127687025	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	127687025	127687025	FANK1	10	G	G	A	39
UBQLN3	50613	broad.mit.edu	36	11	5485405	5485405	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	5485405	5485405	UBQLN3	11	G	G	C	48
LRP4	4038	broad.mit.edu	36	11	46849744	46849744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	46849744	46849744	LRP4	11	C	C	T	25
CATSPER1	117144	broad.mit.edu	36	11	65545150	65545150	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	65545150	65545150	CATSPER1	11	T	T	G	57
GRM5	2915	broad.mit.edu	36	11	88420415	88420415	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	88420415	88420415	GRM5	11	C	C	G	22
SLC36A4	120103	broad.mit.edu	36	11	92557273	92557273	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	92557273	92557273	SLC36A4	11	G	G	C	41
POU2F3	25833	broad.mit.edu	36	11	119685431	119685431	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Nonsense_Mutation	SNP	119685431	119685431	POU2F3	11	C	C	T	23
PDE3A	5139	broad.mit.edu	36	12	20674322	20674322	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	20674322	20674322	PDE3A	12	G	G	T	48
ATP2A2	488	broad.mit.edu	36	12	109262911	109262911	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	109262911	109262911	ATP2A2	12	C	C	A	30
KNTC1	9735	broad.mit.edu	36	12	121585231	121585231	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Nonsense_Mutation	SNP	121585231	121585231	KNTC1	12	C	C	A	29
PAK6	56924	broad.mit.edu	36	15	38352839	38352839	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	38352839	38352839	PAK6	15	G	G	C	42
CNTNAP4	85445	broad.mit.edu	36	16	75150013	75150013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	75150013	75150013	CNTNAP4	16	G	G	A	42
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	27
SLC6A4	6532	broad.mit.edu	36	17	25573043	25573043	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	25573043	25573043	SLC6A4	17	A	A	G	4
CCDC40	55036	broad.mit.edu	36	17	75678206	75678206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	75678206	75678206	CCDC40	17	G	G	A	46
CEP192	55125	broad.mit.edu	36	18	13039205	13039205	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	13039205	13039205	CEP192	18	G	G	T	48
SIRT6	51548	broad.mit.edu	36	19	4125893	4125893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	4125893	4125893	SIRT6	19	G	G	A	43
CHAF1A	10036	broad.mit.edu	36	19	4379827	4379827	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	4379827	4379827	CHAF1A	19	G	G	A	39
LPHN1	22859	broad.mit.edu	36	19	14129845	14129845	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	14129845	14129845	LPHN1	19	G	G	T	34
GPI	2821	broad.mit.edu	36	19	39562300	39562300	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	39562300	39562300	GPI	19	C	C	A	20
HIPK4	147746	broad.mit.edu	36	19	45587617	45587617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	45587617	45587617	HIPK4	19	G	G	A	40
LIPE	3991	broad.mit.edu	36	19	47598919	47598919	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	47598919	47598919	LIPE	19	C	C	T	22
KIF3C	3797	broad.mit.edu	36	2	26030759	26030759	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Splice_Site_SNP	SNP	26030759	26030759	KIF3C	2	C	C	T	28
DYSF	8291	broad.mit.edu	36	2	71615936	71615936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	71615936	71615936	DYSF	2	C	C	T	31
INPP4A	3631	broad.mit.edu	36	2	98547657	98547657	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	98547657	98547657	INPP4A	2	C	C	T	19
COBLL1	22837	broad.mit.edu	36	2	165259149	165259149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	165259149	165259149	COBLL1	2	C	C	T	20
ZNF804A	91752	broad.mit.edu	36	2	185510677	185510677	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	185510677	185510677	ZNF804A	2	G	G	A	37
PGAP1	80055	broad.mit.edu	36	2	197420956	197420956	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	197420956	197420956	PGAP1	2	T	T	C	63
OR6B3	150681	broad.mit.edu	36	2	240633458	240633458	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	240633458	240633458	OR6B3	2	C	C	A	30
PRDM15	63977	broad.mit.edu	36	21	42103580	42103580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	42103580	42103580	PRDM15	21	T	T	C	54
CCDC134	79879	broad.mit.edu	36	22	40535924	40535924	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	40535924	40535924	CCDC134	22	G	G	C	45
CCDC134	79879	broad.mit.edu	36	22	40536209	40536209	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	40536209	40536209	CCDC134	22	G	G	A	43
ADAMTS9	56999	broad.mit.edu	36	3	64647538	64647538	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	64647538	64647538	ADAMTS9	3	A	A	C	11
C3orf22	152065	broad.mit.edu	36	3	127751454	127751454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	127751454	127751454	C3orf22	3	C	C	G	26
RHOH	399	broad.mit.edu	36	4	39921469	39921469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	39921469	39921469	RHOH	4	G	G	A	38
OTUD4	54726	broad.mit.edu	36	4	146278178	146278178	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	146278178	146278178	OTUD4	4	C	C	A	17
SLC4A9	83697	broad.mit.edu	36	5	139723899	139723899	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	139723899	139723899	SLC4A9	5	T	T	G	52
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139818393	139818393	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Splice_Site_SNP	SNP	139818393	139818393	ANKHD1-EIF4EBP3	5	G	G	T	35
PCDHGA9	56107	broad.mit.edu	36	5	140763341	140763341	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	140763341	140763341	PCDHGA9	5	C	C	T	19
PCDHGA10	56106	broad.mit.edu	36	5	140774373	140774373	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	140774373	140774373	PCDHGA10	5	C	C	G	22
PCDHGA11	56105	broad.mit.edu	36	5	140781349	140781350	+	Missense_Mutation	DNP	TA	TA	GG	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	DNP	140781349	140781350	PCDHGA11	5	TA	TA	GG	49
PPARGC1B	133522	broad.mit.edu	36	5	149190629	149190629	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	149190629	149190629	PPARGC1B	5	C	C	T	24
ATP10B	23120	broad.mit.edu	36	5	159949258	159949258	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	159949258	159949258	ATP10B	5	A	A	C	8
DNAH11	8701	broad.mit.edu	36	7	21607028	21607028	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	21607028	21607028	DNAH11	7	A	A	G	3
GPR37	2861	broad.mit.edu	36	7	124191711	124191711	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	124191711	124191711	GPR37	7	C	C	G	28
FAM160B2	64760	broad.mit.edu	36	8	22014083	22014083	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	22014083	22014083	FAM160B2	8	C	C	A	28
PURG	29942	broad.mit.edu	36	8	31009734	31009734	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	31009734	31009734	PURG	8	T	T	A	59
TRAM1	23471	broad.mit.edu	36	8	71661745	71661745	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	71661745	71661745	TRAM1	8	C	C	G	17
OLFML2A	169611	broad.mit.edu	36	9	126601561	126601561	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	126601561	126601561	OLFML2A	9	C	C	A	22
RBM3	5935	broad.mit.edu	36	X	48319938	48319938	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Splice_Site_SNP	SNP	48319938	48319938	RBM3	23	T	T	G	59
SMC1A	8243	broad.mit.edu	36	X	53452728	53452728	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Missense_Mutation	SNP	53452728	53452728	SMC1A	23	G	G	T	35
KIAA2022	340533	broad.mit.edu	36	X	73880322	73880322	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2281-01	Broad	Silent	SNP	73880322	73880322	KIAA2022	23	A	A	T	13
PDE4DIP	9659	broad.mit.edu	36	1	143565954	143565959	+	In_Frame_Del	DEL	TCGCTC	-	TCGCTC	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2281-01	Broad	In_Frame_Del	DEL	143565954	143565959	PDE4DIP	1	TCGCTC	-	TCGCTC	58
BEND7	222389	broad.mit.edu	36	10	13521201	13521202	+	Frame_Shift_Ins	INS	-	TCCC	-	novel	Unknown	TCGA-24-2281-01	TCGA-24-2281-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2281-01	Broad	Frame_Shift_Ins	INS	13521201	13521202	BEND7	10	-	TCCC	-	45
