Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
VPS13D	55187	broad.mit.edu	36	1	12397828	12397828	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	12397828	12397828	VPS13D	1	C	C	T	29
ATP13A2	23400	broad.mit.edu	36	1	17199516	17199517	+	Missense_Mutation	DNP	AT	AT	GA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	17199516	17199517	ATP13A2	1	AT	AT	GA	12
GRHL3	57822	broad.mit.edu	36	1	24536807	24536807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	24536807	24536807	GRHL3	1	G	G	A	40
RLF	6018	broad.mit.edu	36	1	40477621	40477621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	40477621	40477621	RLF	1	C	C	A	29
SCP2	6342	broad.mit.edu	36	1	53226381	53226381	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	53226381	53226381	SCP2	1	C	C	T	22
PCSK9	255738	broad.mit.edu	36	1	55299722	55299723	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	55299722	55299723	PCSK9	1	GG	GG	AA	43
ALG14	199857	broad.mit.edu	36	1	95265285	95265285	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	95265285	95265285	ALG14	1	C	C	T	29
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	C	rs11554290	byHapMap	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	115058052	115058052	NRAS	1	T	T	C	63
NOTCH2	4853	broad.mit.edu	36	1	120260212	120260212	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	120260212	120260212	NOTCH2	1	G	G	A	43
RFX5	5993	broad.mit.edu	36	1	149581391	149581391	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	149581391	149581391	RFX5	1	C	C	T	24
ATP8B2	57198	broad.mit.edu	36	1	152569979	152569980	+	Missense_Mutation	DNP	AG	AG	GC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	152569979	152569980	ATP8B2	1	AG	AG	GC	7
GBA	2629	broad.mit.edu	36	1	153475004	153475004	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	SNP	153475004	153475004	GBA	1	G	G	T	48
TNN	63923	broad.mit.edu	36	1	173321172	173321173	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	173321172	173321173	TNN	1	CC	CC	AG	22
SOX13	9580	broad.mit.edu	36	1	202350167	202350167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	202350167	202350167	SOX13	1	C	C	G	18
MCM10	55388	broad.mit.edu	36	10	13268189	13268189	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	13268189	13268189	MCM10	10	A	A	T	8
MYST4	23522	broad.mit.edu	36	10	76460652	76460652	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	SNP	76460652	76460652	MYST4	10	C	C	T	25
ANKRD2	26287	broad.mit.edu	36	10	99333386	99333386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	99333386	99333386	ANKRD2	10	C	C	A	25
KAZALD1	81621	broad.mit.edu	36	10	102812655	102812655	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	102812655	102812655	KAZALD1	10	C	C	G	28
JAKMIP3	282973	broad.mit.edu	36	10	133817298	133817298	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	133817298	133817298	JAKMIP3	10	A	A	G	12
SLC22A18	5002	broad.mit.edu	36	11	2902983	2902983	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	2902983	2902983	SLC22A18	11	A	A	T	11
RRP8	23378	broad.mit.edu	36	11	6581246	6581246	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	6581246	6581246	RRP8	11	G	G	T	33
GAL3ST3	89792	broad.mit.edu	36	11	65567636	65567636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	65567636	65567636	GAL3ST3	11	G	G	A	45
TCIRG1	10312	broad.mit.edu	36	11	67573234	67573234	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	67573234	67573234	TCIRG1	11	T	T	C	58
CCDC90B	60492	broad.mit.edu	36	11	82674662	82674662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	82674662	82674662	CCDC90B	11	A	A	G	8
FOLH1B	219595	broad.mit.edu	36	11	89063844	89063845	+	Missense_Mutation	DNP	CA	CA	TT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	89063844	89063845	FOLH1B	11	CA	CA	TT	21
TREH	11181	broad.mit.edu	36	11	118036560	118036560	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	118036560	118036560	TREH	11	T	T	G	63
SORL1	6653	broad.mit.edu	36	11	120896704	120896704	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	120896704	120896704	SORL1	11	G	G	C	43
GPRC5D	55507	broad.mit.edu	36	12	12994440	12994440	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	12994440	12994440	GPRC5D	12	C	C	A	31
ENDOU	8909	broad.mit.edu	36	12	46398208	46398208	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	46398208	46398208	ENDOU	12	T	T	C	54
ATF1	466	broad.mit.edu	36	12	49494460	49494460	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	49494460	49494460	ATF1	12	G	G	C	45
ERBB3	2065	broad.mit.edu	36	12	54763866	54763866	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	54763866	54763866	ERBB3	12	G	G	T	48
UHRF1BP1L	23074	broad.mit.edu	36	12	99021836	99021836	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	99021836	99021836	UHRF1BP1L	12	G	G	A	48
TCHP	84260	broad.mit.edu	36	12	108836700	108836700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	108836700	108836700	TCHP	12	T	T	C	55
DHX37	57647	broad.mit.edu	36	12	124017294	124017294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	124017294	124017294	DHX37	12	C	C	T	29
ATP8A2	51761	broad.mit.edu	36	13	25051012	25051012	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	25051012	25051012	ATP8A2	13	C	C	T	26
RNASE1	6035	broad.mit.edu	36	14	20339645	20339645	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	20339645	20339645	RNASE1	14	G	G	T	42
RAB2B	84932	broad.mit.edu	36	14	21006713	21006713	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	SNP	21006713	21006713	RAB2B	14	G	G	T	36
MYH6	4624	broad.mit.edu	36	14	22935767	22935767	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	22935767	22935767	MYH6	14	G	G	A	44
BRF1	2972	broad.mit.edu	36	14	104756594	104756594	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	104756594	104756594	BRF1	14	T	T	C	56
C15orf2	23742	broad.mit.edu	36	15	22472345	22472345	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	22472345	22472345	C15orf2	15	G	G	A	38
HERC2	8924	broad.mit.edu	36	15	26152448	26152448	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	26152448	26152448	HERC2	15	G	G	A	37
PIGB	9488	broad.mit.edu	36	15	53420190	53420191	+	Nonsense_Mutation	DNP	TC	TC	GA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	DNP	53420190	53420191	PIGB	15	TC	TC	GA	62
IGDCC3	9543	broad.mit.edu	36	15	63408533	63408533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	63408533	63408533	IGDCC3	15	G	G	T	41
CYP1A1	1543	broad.mit.edu	36	15	72802408	72802409	+	Missense_Mutation	DNP	GG	GG	CC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	72802408	72802409	CYP1A1	15	GG	GG	CC	35
POLR2C	5432	broad.mit.edu	36	16	56060662	56060662	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	56060662	56060662	POLR2C	16	G	G	A	48
GPR114	221188	broad.mit.edu	36	16	56156449	56156449	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	56156449	56156449	GPR114	16	T	T	G	51
WDR59	79726	broad.mit.edu	36	16	73477099	73477099	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	73477099	73477099	WDR59	16	T	T	C	62
RILP	83547	broad.mit.edu	36	17	1498431	1498432	+	Missense_Mutation	DNP	CT	CT	TC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	1498431	1498432	RILP	17	CT	CT	TC	20
RILP	83547	broad.mit.edu	36	17	1498438	1498438	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	1498438	1498438	RILP	17	T	T	C	56
KSR1	8844	broad.mit.edu	36	17	22959164	22959164	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Splice_Site_SNP	SNP	22959164	22959164	KSR1	17	G	G	T	44
GIT1	28964	broad.mit.edu	36	17	24928380	24928380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	24928380	24928380	GIT1	17	C	C	T	28
SSH2	85464	broad.mit.edu	36	17	25023173	25023173	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	25023173	25023173	SSH2	17	G	G	C	47
PTRF	284119	broad.mit.edu	36	17	37828412	37828412	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	37828412	37828412	PTRF	17	T	T	A	54
EVPL	2125	broad.mit.edu	36	17	71517587	71517587	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	71517587	71517587	EVPL	17	C	C	A	32
QRICH2	84074	broad.mit.edu	36	17	71801315	71801315	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	71801315	71801315	QRICH2	17	T	T	C	63
UBE2O	63893	broad.mit.edu	36	17	71898724	71898724	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	71898724	71898724	UBE2O	17	G	G	C	33
DNAH17	8632	broad.mit.edu	36	17	73969356	73969356	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	73969356	73969356	DNAH17	17	A	A	C	9
DNAH17	8632	broad.mit.edu	36	17	73969358	73969359	+	Missense_Mutation	DNP	TC	TC	AG	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	73969358	73969359	DNAH17	17	TC	TC	AG	50
TBC1D16	125058	broad.mit.edu	36	17	75538167	75538168	+	Missense_Mutation	DNP	CT	CT	GC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	75538167	75538168	TBC1D16	17	CT	CT	GC	28
RNF213	57674	broad.mit.edu	36	17	75952064	75952064	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	75952064	75952064	RNF213	17	C	C	A	26
TRAPPC8	22878	broad.mit.edu	36	18	27747391	27747391	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	27747391	27747391	TRAPPC8	18	G	G	A	45
KLHL14	57565	broad.mit.edu	36	18	28511206	28511206	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	28511206	28511206	KLHL14	18	C	C	A	24
SERPINB4	6318	broad.mit.edu	36	18	59460015	59460015	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	59460015	59460015	SERPINB4	18	C	C	T	27
CTDP1	9150	broad.mit.edu	36	18	75558969	75558970	+	Missense_Mutation	DNP	CG	CG	GT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	75558969	75558970	CTDP1	18	CG	CG	GT	31
ADNP2	22850	broad.mit.edu	36	18	75996151	75996151	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	75996151	75996151	ADNP2	18	G	G	T	48
ATP8B3	148229	broad.mit.edu	36	19	1740034	1740035	+	Missense_Mutation	DNP	GA	GA	CC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	1740034	1740035	ATP8B3	19	GA	GA	CC	41
RANBP3	8498	broad.mit.edu	36	19	5884475	5884475	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	5884475	5884475	RANBP3	19	C	C	A	26
C19orf57	79173	broad.mit.edu	36	19	13862229	13862229	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	13862229	13862229	C19orf57	19	A	A	G	15
UPF1	5976	broad.mit.edu	36	19	18835390	18835390	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	18835390	18835390	UPF1	19	A	A	T	3
UPF1	5976	broad.mit.edu	36	19	18835392	18835392	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	18835392	18835392	UPF1	19	C	C	T	26
SLC7A10	56301	broad.mit.edu	36	19	38393283	38393283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	38393283	38393283	SLC7A10	19	C	C	T	25
ZNF546	339327	broad.mit.edu	36	19	45212801	45212801	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	45212801	45212801	ZNF546	19	A	A	T	4
CYP2A6	1548	broad.mit.edu	36	19	46042460	46042460	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	46042460	46042460	CYP2A6	19	T	T	G	63
SIGLEC12	89858	broad.mit.edu	36	19	56694674	56694674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	56694674	56694674	SIGLEC12	19	G	G	A	40
ZNF324B	388569	broad.mit.edu	36	19	63658941	63658942	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	63658941	63658942	ZNF324B	19	TC	TC	GT	54
DHX57	90957	broad.mit.edu	36	2	38918511	38918511	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	38918511	38918511	DHX57	2	C	C	G	20
THADA	63892	broad.mit.edu	36	2	43373614	43373614	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	43373614	43373614	THADA	2	G	G	A	36
SOCS5	9655	broad.mit.edu	36	2	46839758	46839758	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	46839758	46839758	SOCS5	2	C	C	T	25
FAM161A	84140	broad.mit.edu	36	2	61934636	61934636	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	61934636	61934636	FAM161A	2	G	G	A	41
CYP26B1	56603	broad.mit.edu	36	2	72213210	72213211	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	72213210	72213211	CYP26B1	2	TC	TC	AA	58
WBP1	23559	broad.mit.edu	36	2	74541197	74541198	+	Missense_Mutation	DNP	GT	GT	CC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	74541197	74541198	WBP1	2	GT	GT	CC	44
FAM178B	51252	broad.mit.edu	36	2	96907404	96907404	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	96907404	96907404	FAM178B	2	T	T	C	57
CNGA3	1261	broad.mit.edu	36	2	98379211	98379211	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	98379211	98379211	CNGA3	2	C	C	T	31
NCKAP5	344148	broad.mit.edu	36	2	133256937	133256937	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	133256937	133256937	NCKAP5	2	G	G	T	42
WIPF1	7456	broad.mit.edu	36	2	175144666	175144666	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	175144666	175144666	WIPF1	2	G	G	T	44
TTN	7273	broad.mit.edu	36	2	179108485	179108485	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	179108485	179108485	TTN	2	G	G	A	33
TTN	7273	broad.mit.edu	36	2	179140781	179140781	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	179140781	179140781	TTN	2	C	C	T	20
SGPP2	130367	broad.mit.edu	36	2	223047552	223047552	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	223047552	223047552	SGPP2	2	G	G	A	40
KCNE4	23704	broad.mit.edu	36	2	223625895	223625895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	223625895	223625895	KCNE4	2	G	G	A	37
DNTTIP1	116092	broad.mit.edu	36	20	43857488	43857488	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	43857488	43857488	DNTTIP1	20	A	A	G	7
NKAIN4	128414	broad.mit.edu	36	20	61351772	61351773	+	Missense_Mutation	DNP	AG	AG	GC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	61351772	61351773	NKAIN4	20	AG	AG	GC	11
IFNAR2	3455	broad.mit.edu	36	21	33556887	33556887	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	33556887	33556887	IFNAR2	21	A	A	T	12
PKNOX1	5316	broad.mit.edu	36	21	43323267	43323267	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	43323267	43323267	PKNOX1	21	A	A	G	10
MTP18	51537	broad.mit.edu	36	22	29154620	29154621	+	Missense_Mutation	DNP	GA	GA	AG	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	29154620	29154621	MTP18	22	GA	GA	AG	33
TOM1	10043	broad.mit.edu	36	22	34073161	34073161	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	SNP	34073161	34073161	TOM1	22	A	A	T	9
TBC1D22A	25771	broad.mit.edu	36	22	45886159	45886160	+	Missense_Mutation	DNP	TT	TT	GC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	45886159	45886160	TBC1D22A	22	TT	TT	GC	64
BHLHE40	8553	broad.mit.edu	36	3	5000042	5000042	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	5000042	5000042	BHLHE40	3	A	A	C	6
PFKFB4	5210	broad.mit.edu	36	3	48551058	48551058	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Splice_Site_SNP	SNP	48551058	48551058	PFKFB4	3	T	T	A	55
MAPKAPK3	7867	broad.mit.edu	36	3	50630116	50630116	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	50630116	50630116	MAPKAPK3	3	T	T	G	59
SUCLG2	8801	broad.mit.edu	36	3	67662214	67662214	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	67662214	67662214	SUCLG2	3	G	G	T	45
EPHA6	285220	broad.mit.edu	36	3	98794229	98794229	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	98794229	98794229	EPHA6	3	C	C	T	30
KIAA2018	205717	broad.mit.edu	36	3	114859445	114859445	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	114859445	114859445	KIAA2018	3	C	C	T	23
GP5	2814	broad.mit.edu	36	3	195599383	195599384	+	Missense_Mutation	DNP	GG	GG	CA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	195599383	195599384	GP5	3	GG	GG	CA	39
MUC4	4585	broad.mit.edu	36	3	196961495	196961495	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	196961495	196961495	MUC4	3	T	T	G	57
WDR53	348793	broad.mit.edu	36	3	197772386	197772386	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	197772386	197772386	WDR53	3	T	T	C	52
CHRNA9	55584	broad.mit.edu	36	4	40050753	40050753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	40050753	40050753	CHRNA9	4	G	G	A	44
RASL11B	65997	broad.mit.edu	36	4	53426614	53426614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	53426614	53426614	RASL11B	4	C	C	T	22
TRAM1L1	133022	broad.mit.edu	36	4	118225351	118225351	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	118225351	118225351	TRAM1L1	4	T	T	G	52
DCTD	1635	broad.mit.edu	36	4	184052681	184052681	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	184052681	184052681	DCTD	4	C	C	G	25
FRG2	448831	broad.mit.edu	36	4	191183946	191183946	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	191183946	191183946	FRG2	4	G	G	T	41
SDHA	6389	broad.mit.edu	36	5	279126	279126	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	279126	279126	SDHA	5	G	G	T	41
ZFR	51663	broad.mit.edu	36	5	32450949	32450949	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	32450949	32450949	ZFR	5	G	G	A	47
DDX46	9879	broad.mit.edu	36	5	134149139	134149139	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	134149139	134149139	DDX46	5	G	G	A	47
PCDHB9	56127	broad.mit.edu	36	5	140547997	140547997	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	140547997	140547997	PCDHB9	5	T	T	G	63
DPYSL3	1809	broad.mit.edu	36	5	146760540	146760540	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	146760540	146760540	DPYSL3	5	G	G	C	47
STK10	6793	broad.mit.edu	36	5	171466249	171466250	+	Missense_Mutation	DNP	CG	CG	AA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	171466249	171466250	STK10	5	CG	CG	AA	27
RREB1	6239	broad.mit.edu	36	6	7127296	7127296	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	7127296	7127296	RREB1	6	G	G	C	41
RIMS1	22999	broad.mit.edu	36	6	72948915	72948915	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	72948915	72948915	RIMS1	6	G	G	T	39
TPBG	7162	broad.mit.edu	36	6	83131803	83131803	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	83131803	83131803	TPBG	6	G	G	T	43
SYNE1	23345	broad.mit.edu	36	6	152602512	152602512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	152602512	152602512	SYNE1	6	G	G	A	33
SYNE1	23345	broad.mit.edu	36	6	152699818	152699819	+	Missense_Mutation	DNP	TC	TC	AT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	152699818	152699819	SYNE1	6	TC	TC	AT	62
ARL4A	10124	broad.mit.edu	36	7	12694730	12694730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	12694730	12694730	ARL4A	7	A	A	T	9
GRB10	2887	broad.mit.edu	36	7	50709731	50709731	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	50709731	50709731	GRB10	7	G	G	C	43
PCLO	27445	broad.mit.edu	36	7	82421790	82421790	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Nonsense_Mutation	SNP	82421790	82421790	PCLO	7	C	C	A	32
ACN9	57001	broad.mit.edu	36	7	96585054	96585054	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	96585054	96585054	ACN9	7	A	A	G	1
GAL3ST4	79690	broad.mit.edu	36	7	99596339	99596339	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	99596339	99596339	GAL3ST4	7	G	G	C	44
CUX1	1523	broad.mit.edu	36	7	101669478	101669478	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	101669478	101669478	CUX1	7	C	C	A	19
NUP205	23165	broad.mit.edu	36	7	134952008	134952008	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	134952008	134952008	NUP205	7	A	A	T	14
RP1L1	94137	broad.mit.edu	36	8	10506943	10506943	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	10506943	10506943	RP1L1	8	C	C	G	23
SOX7	83595	broad.mit.edu	36	8	10621374	10621374	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	10621374	10621374	SOX7	8	C	C	G	23
GLIS3	169792	broad.mit.edu	36	9	4107947	4107947	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	4107947	4107947	GLIS3	9	A	A	C	14
FANCC	2176	broad.mit.edu	36	9	96909354	96909354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	96909354	96909354	FANCC	9	G	G	T	34
AKNA	80709	broad.mit.edu	36	9	116179165	116179165	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	116179165	116179165	AKNA	9	C	C	T	26
CDK5RAP2	55755	broad.mit.edu	36	9	122239479	122239479	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	122239479	122239479	CDK5RAP2	9	C	C	G	21
TRAF1	7185	broad.mit.edu	36	9	122728061	122728062	+	Missense_Mutation	DNP	AC	AC	GT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	122728061	122728062	TRAF1	9	AC	AC	GT	6
TTC16	158248	broad.mit.edu	36	9	129529464	129529464	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	129529464	129529464	TTC16	9	C	C	G	28
SH3GLB2	56904	broad.mit.edu	36	9	130816948	130816948	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	130816948	130816948	SH3GLB2	9	C	C	A	30
LAMC3	10319	broad.mit.edu	36	9	132926412	132926413	+	Missense_Mutation	DNP	CT	CT	GA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	DNP	132926412	132926413	LAMC3	9	CT	CT	GA	20
DBH	1621	broad.mit.edu	36	9	135491549	135491549	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	135491549	135491549	DBH	9	C	C	T	27
EIF1AX	1964	broad.mit.edu	36	X	20066663	20066663	+	Splice_Site_SNP	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Splice_Site_SNP	SNP	20066663	20066663	EIF1AX	23	T	T	G	55
ACRC	93953	broad.mit.edu	36	X	70740639	70740639	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	70740639	70740639	ACRC	23	G	G	C	41
FAM50A	9130	broad.mit.edu	36	X	153331253	153331253	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Silent	SNP	153331253	153331253	FAM50A	23	C	C	T	29
GAB3	139716	broad.mit.edu	36	X	153593771	153593771	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2095-01	Broad	Missense_Mutation	SNP	153593771	153593771	GAB3	23	G	G	T	46
CHD5	26038	broad.mit.edu	36	1	6109327	6109328	+	Frame_Shift_Ins	INS	-	AT	-	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Ins	INS	6109327	6109328	CHD5	1	-	AT	-	34
H6PD	9563	broad.mit.edu	36	1	9247369	9247372	+	Frame_Shift_Del	DEL	GTCC	-	GTCC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	9247369	9247372	H6PD	1	GTCC	-	GTCC	36
CNKSR1	10256	broad.mit.edu	36	1	26388500	26388504	+	Frame_Shift_Del	DEL	CAGCT	-	CAGCT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	26388500	26388504	CNKSR1	1	CAGCT	-	CAGCT	25
ZMYM6	9204	broad.mit.edu	36	1	35225435	35225437	+	In_Frame_Del	DEL	AAA	-	AAA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	In_Frame_Del	DEL	35225435	35225437	ZMYM6	1	AAA	-	AAA	9
KIAA1462	57608	broad.mit.edu	36	10	30358209	30358215	+	Frame_Shift_Del	DEL	GCCTCCC	-	GCCTCCC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	30358209	30358215	KIAA1462	10	GCCTCCC	-	GCCTCCC	42
DOCK1	1793	broad.mit.edu	36	10	128815893	128815928	+	Splice_Site_Del	DEL	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	-	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Splice_Site_Del	DEL	128815893	128815928	DOCK1	10	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	-	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	48
ACTN3	89	broad.mit.edu	36	11	66083371	66083374	+	Frame_Shift_Del	DEL	GAGC	-	GAGC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	66083371	66083374	ACTN3	11	GAGC	-	GAGC	33
KBTBD7	84078	broad.mit.edu	36	13	40666239	40666276	+	Frame_Shift_Del	DEL	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	-	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	40666239	40666276	KBTBD7	13	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	-	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	55
FURIN	5045	broad.mit.edu	36	15	89225877	89225902	+	Frame_Shift_Del	DEL	TGGCCGGCCTCAGCTGCGCCTTCATC	-	TGGCCGGCCTCAGCTGCGCCTTCATC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	89225877	89225902	FURIN	15	TGGCCGGCCTCAGCTGCGCCTTCATC	-	TGGCCGGCCTCAGCTGCGCCTTCATC	59
UBE2O	63893	broad.mit.edu	36	17	71898707	71898713	+	Frame_Shift_Del	DEL	CCCTTGG	-	CCCTTGG	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	71898707	71898713	UBE2O	17	CCCTTGG	-	CCCTTGG	18
MYO9B	4650	broad.mit.edu	36	19	17166612	17166617	+	In_Frame_Del	DEL	ACTCTC	-	ACTCTC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	In_Frame_Del	DEL	17166612	17166617	MYO9B	19	ACTCTC	-	ACTCTC	10
CBFA2T2	9139	broad.mit.edu	36	20	31625730	31625760	+	Splice_Site_Del	DEL	TATGTGTGAAACATTCATTTCTAATAGAGGA	-	TATGTGTGAAACATTCATTTCTAATAGAGGA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Splice_Site_Del	DEL	31625730	31625760	CBFA2T2	20	TATGTGTGAAACATTCATTTCTAATAGAGGA	-	TATGTGTGAAACATTCATTTCTAATAGAGGA	57
EPM2AIP1	9852	broad.mit.edu	36	3	37008083	37008084	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Ins	INS	37008083	37008084	EPM2AIP1	3	-	C	-	62
PDZRN3	23024	broad.mit.edu	36	3	73516624	73516640	+	Frame_Shift_Del	DEL	CGGTGGCGTCGTCGCCA	-	CGGTGGCGTCGTCGCCA	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	73516624	73516640	PDZRN3	3	CGGTGGCGTCGTCGCCA	-	CGGTGGCGTCGTCGCCA	27
TACC3	10460	broad.mit.edu	36	4	1712463	1712482	+	Frame_Shift_Del	DEL	CTTCAAGCGTTTTGAGAAAC	-	CTTCAAGCGTTTTGAGAAAC	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	1712463	1712482	TACC3	4	CTTCAAGCGTTTTGAGAAAC	-	CTTCAAGCGTTTTGAGAAAC	32
UNC5C	8633	broad.mit.edu	36	4	96325294	96325295	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Ins	INS	96325294	96325295	UNC5C	4	-	T	-	44
AGFG2	3268	broad.mit.edu	36	7	99999427	99999451	+	Frame_Shift_Del	DEL	CTTCCCCCAGGCAGTGCCACCCACT	-	CTTCCCCCAGGCAGTGCCACCCACT	novel	Unknown	TCGA-61-2095-01	TCGA-61-2095-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2095-01	Broad	Frame_Shift_Del	DEL	99999427	99999451	AGFG2	7	CTTCCCCCAGGCAGTGCCACCCACT	-	CTTCCCCCAGGCAGTGCCACCCACT	28
