| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PANCANCER.2012_07_25__00_00_09.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues8503252839042373026.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues1213456975565103535.tsv |
| GDAC_MergeDataFiles2 output filename | PANCANCER |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data |
| Execution Times: | |
| Submitted: | 18:41:16 25-07-12 |
| Completed: | |
| Elapsed: | 00 hrs 10 mins 14 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 136975] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.PANCANCER.2012_07_25__00_00_09.samplestamp.txt |
| annotationid | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data |
| sdrffilename | |
| datapathsfile | dependentsValues8503252839042373026.tsv |
| Output Files: | |
| PANCANCER.merger.sdrf.txt | |
| dcc_archive.properties | |
| .lsf.out | |
| dcc_archive_manifest.tsv | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 18:41:16 25-07-12 |
| Completed: | 18:41:58 25-07-12 |
| Elapsed: | 00 hrs 00 mins 41 secs |
step 2. GDAC_MergeDataFiles [id: 136976] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues1213456975565103535.tsv |
| output filename | PANCANCER |
| row_column | column |
| num_headers | 1 |
| filetype | rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data |
| Output Files: | |
| PANCANCER.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 18:41:16 25-07-12 |
| Completed: | 18:51:29 25-07-12 |
| Elapsed: | 00 hrs 10 mins 12 secs |