Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
EYA3	2140	broad.mit.edu	36	1	28187735	28187735	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	28187735	28187735	EYA3	1	G	G	C	33
SPOCD1	90853	broad.mit.edu	36	1	32052195	32052195	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	32052195	32052195	SPOCD1	1	C	C	G	32
CSMD2	114784	broad.mit.edu	36	1	33901272	33901272	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	33901272	33901272	CSMD2	1	A	A	T	3
EIF2C4	192670	broad.mit.edu	36	1	36064236	36064236	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	36064236	36064236	EIF2C4	1	A	A	G	5
DAB1	1600	broad.mit.edu	36	1	57253676	57253676	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	57253676	57253676	DAB1	1	G	G	A	38
PALMD	54873	broad.mit.edu	36	1	99927002	99927002	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	99927002	99927002	PALMD	1	G	G	C	33
SLC16A4	9122	broad.mit.edu	36	1	110723108	110723108	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	110723108	110723108	SLC16A4	1	G	G	C	33
RHOC	389	broad.mit.edu	36	1	113047244	113047244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	113047244	113047244	RHOC	1	G	G	T	48
CCT3	7203	broad.mit.edu	36	1	154555309	154555309	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	154555309	154555309	CCT3	1	G	G	C	33
CD1C	911	broad.mit.edu	36	1	156526512	156526512	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	156526512	156526512	CD1C	1	C	C	T	32
CD84	8832	broad.mit.edu	36	1	158801956	158801956	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	158801956	158801956	CD84	1	G	G	A	40
CD244	51744	broad.mit.edu	36	1	159074894	159074894	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	159074894	159074894	CD244	1	C	C	T	17
MPZ	4359	broad.mit.edu	36	1	159542864	159542864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	159542864	159542864	MPZ	1	C	C	T	23
FCGR2A	2212	broad.mit.edu	36	1	159747303	159747303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	159747303	159747303	FCGR2A	1	G	G	A	37
PFKFB2	5208	broad.mit.edu	36	1	205303127	205303127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	205303127	205303127	PFKFB2	1	G	G	T	42
USH2A	7399	broad.mit.edu	36	1	214564266	214564266	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	214564266	214564266	USH2A	1	T	T	A	50
OBSCN	84033	broad.mit.edu	36	1	226471507	226471507	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	226471507	226471507	OBSCN	1	G	G	T	43
RYR2	6262	broad.mit.edu	36	1	235869021	235869021	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	235869021	235869021	RYR2	1	G	G	C	33
MRC1	4360	broad.mit.edu	36	10	17905243	17905243	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	17905243	17905243	MRC1	10	G	G	A	43
DNA2	1763	broad.mit.edu	36	10	69846615	69846615	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	69846615	69846615	DNA2	10	C	C	A	21
CDH23	64072	broad.mit.edu	36	10	73228218	73228218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	73228218	73228218	CDH23	10	C	C	T	22
PLAU	5328	broad.mit.edu	36	10	75343489	75343489	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	75343489	75343489	PLAU	10	C	C	G	24
DLG5	9231	broad.mit.edu	36	10	79239434	79239434	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	79239434	79239434	DLG5	10	G	G	T	43
CYP2C19	1557	broad.mit.edu	36	10	96592593	96592593	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	96592593	96592593	CYP2C19	10	A	A	G	7
SLK	9748	broad.mit.edu	36	10	105758054	105758054	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	105758054	105758054	SLK	10	G	G	T	33
CUZD1	50624	broad.mit.edu	36	10	124588689	124588689	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	124588689	124588689	CUZD1	10	G	G	A	40
ANO5	203859	broad.mit.edu	36	11	22250961	22250961	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Silent	SNP	22250961	22250961	ANO5	11	T	T	A	62
API5	8539	broad.mit.edu	36	11	43298958	43298958	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	43298958	43298958	API5	11	A	A	C	3
B3GAT3	26229	broad.mit.edu	36	11	62141083	62141083	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	62141083	62141083	B3GAT3	11	G	G	A	33
ALG8	79053	broad.mit.edu	36	11	77509759	77509759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	77509759	77509759	ALG8	11	G	G	A	39
MED17	9440	broad.mit.edu	36	11	93166659	93166659	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	93166659	93166659	MED17	11	A	A	G	11
TRIM29	23650	broad.mit.edu	36	11	119501780	119501780	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	119501780	119501780	TRIM29	11	A	A	T	11
ST14	6768	broad.mit.edu	36	11	129565684	129565684	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	129565684	129565684	ST14	11	T	T	G	54
LRTM2	654429	broad.mit.edu	36	12	1814040	1814040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	1814040	1814040	LRTM2	12	C	C	T	19
VWF	7450	broad.mit.edu	36	12	5971280	5971280	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	5971280	5971280	VWF	12	G	G	C	36
PHB2	11331	broad.mit.edu	36	12	6946612	6946612	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	6946612	6946612	PHB2	12	G	G	C	47
CD163L1	283316	broad.mit.edu	36	12	7422921	7422921	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	7422921	7422921	CD163L1	12	G	G	T	42
DIP2B	57609	broad.mit.edu	36	12	49355378	49355378	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Splice_Site_SNP	SNP	49355378	49355378	DIP2B	12	G	G	C	35
ITGB7	3695	broad.mit.edu	36	12	51877565	51877565	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	51877565	51877565	ITGB7	12	C	C	T	20
MARS	4141	broad.mit.edu	36	12	56178523	56178523	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	56178523	56178523	MARS	12	A	A	G	16
KITLG	4254	broad.mit.edu	36	12	87436769	87436769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	87436769	87436769	KITLG	12	G	G	A	45
APAF1	317	broad.mit.edu	36	12	97567504	97567504	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	97567504	97567504	APAF1	12	A	A	T	9
CRY1	1407	broad.mit.edu	36	12	105919188	105919188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	105919188	105919188	CRY1	12	T	T	A	56
CMKLR1	1240	broad.mit.edu	36	12	107210540	107210540	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	107210540	107210540	CMKLR1	12	G	G	C	47
MED13L	23389	broad.mit.edu	36	12	114905449	114905449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	114905449	114905449	MED13L	12	G	G	A	33
EFNB2	1948	broad.mit.edu	36	13	105943609	105943609	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	105943609	105943609	EFNB2	13	G	G	A	39
CEBPE	1053	broad.mit.edu	36	14	22656582	22656582	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	22656582	22656582	CEBPE	14	A	A	G	4
TRIP11	9321	broad.mit.edu	36	14	91542457	91542457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	91542457	91542457	TRIP11	14	T	T	G	62
TRIP11	9321	broad.mit.edu	36	14	91550328	91550328	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Silent	SNP	91550328	91550328	TRIP11	14	T	T	C	57
DYNC1H1	1778	broad.mit.edu	36	14	101574586	101574586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	101574586	101574586	DYNC1H1	14	C	C	G	28
DUOX1	53905	broad.mit.edu	36	15	43235335	43235335	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	43235335	43235335	DUOX1	15	T	T	A	51
FANCI	55215	broad.mit.edu	36	15	87648148	87648148	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	87648148	87648148	FANCI	15	G	G	A	39
C15orf32	145858	broad.mit.edu	36	15	90816584	90816584	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	90816584	90816584	C15orf32	15	C	C	T	25
GEMIN4	50628	broad.mit.edu	36	17	597178	597178	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	597178	597178	GEMIN4	17	G	G	A	44
TP53	7157	broad.mit.edu	36	17	7519094	7519094	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Splice_Site_SNP	SNP	7519094	7519094	TP53	17	A	A	C	6
ALDH3A2	224	broad.mit.edu	36	17	19515740	19515740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	19515740	19515740	ALDH3A2	17	C	C	T	24
EFTUD2	9343	broad.mit.edu	36	17	40292851	40292851	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	40292851	40292851	EFTUD2	17	A	A	T	8
HOXB4	3214	broad.mit.edu	36	17	44010278	44010278	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	44010278	44010278	HOXB4	17	C	C	T	27
MYOM1	8736	broad.mit.edu	36	18	3205130	3205130	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	3205130	3205130	MYOM1	18	C	C	A	23
RBBP8	5932	broad.mit.edu	36	18	18831639	18831639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	18831639	18831639	RBBP8	18	G	G	A	36
CLPP	8192	broad.mit.edu	36	19	6315626	6315626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	6315626	6315626	CLPP	19	C	C	T	30
CDKN2D	1032	broad.mit.edu	36	19	10538786	10538787	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			CC	AG	CC	CC	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	DNP	10538786	10538787	CDKN2D	19	CC	CC	AG	22
ZNF823	55552	broad.mit.edu	36	19	11693769	11693769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	11693769	11693769	ZNF823	19	T	T	C	49
RHPN2	85415	broad.mit.edu	36	19	38174570	38174570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	38174570	38174570	RHPN2	19	G	G	A	37
ZNF222	7673	broad.mit.edu	36	19	49227973	49227973	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	49227973	49227973	ZNF222	19	G	G	T	33
IL4I1	259307	broad.mit.edu	36	19	55090198	55090198	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	55090198	55090198	IL4I1	19	G	G	C	39
CNOT3	4849	broad.mit.edu	36	19	59343873	59343873	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	59343873	59343873	CNOT3	19	G	G	T	36
CNOT3	4849	broad.mit.edu	36	19	59349278	59349278	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	59349278	59349278	CNOT3	19	G	G	C	36
TNNT1	7138	broad.mit.edu	36	19	60340308	60340308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	60340308	60340308	TNNT1	19	C	C	G	29
ZNF586	54807	broad.mit.edu	36	19	62982007	62982007	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Silent	SNP	62982007	62982007	ZNF586	19	A	A	G	11
LPIN1	23175	broad.mit.edu	36	2	11860585	11860585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	11860585	11860585	LPIN1	2	C	C	A	20
SLC5A6	8884	broad.mit.edu	36	2	27279631	27279631	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	27279631	27279631	SLC5A6	2	C	C	G	23
DYSF	8291	broad.mit.edu	36	2	71739621	71739621	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	71739621	71739621	DYSF	2	A	A	G	16
EIF5B	9669	broad.mit.edu	36	2	99373550	99373550	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	99373550	99373550	EIF5B	2	C	C	A	29
NEB	4703	broad.mit.edu	36	2	152070318	152070318	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	152070318	152070318	NEB	2	C	C	G	30
KIAA1715	80856	broad.mit.edu	36	2	176512585	176512585	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	176512585	176512585	KIAA1715	2	T	T	C	54
PARD3B	117583	broad.mit.edu	36	2	206188590	206188590	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	206188590	206188590	PARD3B	2	C	C	G	20
ADAM23	8745	broad.mit.edu	36	2	207146159	207146159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	207146159	207146159	ADAM23	2	G	G	A	47
PIKFYVE	200576	broad.mit.edu	36	2	208926972	208926972	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	208926972	208926972	PIKFYVE	2	C	C	T	31
FARSB	10056	broad.mit.edu	36	2	223173002	223173002	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	223173002	223173002	FARSB	2	T	T	G	63
NCL	4691	broad.mit.edu	36	2	232033805	232033805	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	232033805	232033805	NCL	2	A	A	T	15
DEFB118	117285	broad.mit.edu	36	20	29424534	29424534	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	29424534	29424534	DEFB118	20	C	C	A	17
TTLL9	164395	broad.mit.edu	36	20	29961352	29961352	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	29961352	29961352	TTLL9	20	G	G	C	38
GSS	2937	broad.mit.edu	36	20	32994031	32994031	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	32994031	32994031	GSS	20	G	G	C	43
ADNP	23394	broad.mit.edu	36	20	48952048	48952048	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	48952048	48952048	ADNP	20	A	A	G	13
CYP24A1	1591	broad.mit.edu	36	20	52215711	52215711	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	52215711	52215711	CYP24A1	20	T	T	A	62
TAF4	6874	broad.mit.edu	36	20	60023144	60023144	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	60023144	60023144	TAF4	20	G	G	C	39
ZNF385D	79750	broad.mit.edu	36	3	21437843	21437843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	21437843	21437843	ZNF385D	3	C	C	A	20
TOP2B	7155	broad.mit.edu	36	3	25640152	25640152	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	25640152	25640152	TOP2B	3	T	T	C	49
SETD2	29072	broad.mit.edu	36	3	47100875	47100875	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	47100875	47100875	SETD2	3	A	A	T	4
ZNF80	7634	broad.mit.edu	36	3	115438336	115438336	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	115438336	115438336	ZNF80	3	G	G	A	37
ZBTB20	26137	broad.mit.edu	36	3	115552582	115552582	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	115552582	115552582	ZBTB20	3	C	C	G	18
GOLGB1	2804	broad.mit.edu	36	3	122893196	122893196	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	122893196	122893196	GOLGB1	3	C	C	A	30
ACAD9	28976	broad.mit.edu	36	3	130100986	130100986	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	130100986	130100986	ACAD9	3	G	G	T	42
PLSCR1	5359	broad.mit.edu	36	3	147716578	147716578	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	147716578	147716578	PLSCR1	3	C	C	G	30
CLNK	116449	broad.mit.edu	36	4	10182479	10182479	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	10182479	10182479	CLNK	4	T	T	C	56
HERC5	51191	broad.mit.edu	36	4	89634439	89634439	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	89634439	89634439	HERC5	4	T	T	G	64
DDX60	55601	broad.mit.edu	36	4	169443135	169443135	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	169443135	169443135	DDX60	4	A	A	G	1
SLC45A2	51151	broad.mit.edu	36	5	33999763	33999763	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	33999763	33999763	SLC45A2	5	G	G	A	45
GPR98	84059	broad.mit.edu	36	5	90026254	90026254	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	90026254	90026254	GPR98	5	A	A	T	11
LNPEP	4012	broad.mit.edu	36	5	96359496	96359496	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	96359496	96359496	LNPEP	5	G	G	T	37
SLCO6A1	133482	broad.mit.edu	36	5	101783449	101783449	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	101783449	101783449	SLCO6A1	5	C	C	T	30
ITK	3702	broad.mit.edu	36	5	156601293	156601293	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	156601293	156601293	ITK	5	G	G	T	34
ODZ2	57451	broad.mit.edu	36	5	167585814	167585814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	167585814	167585814	ODZ2	5	C	C	A	32
DDX41	51428	broad.mit.edu	36	5	176875735	176875735	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	176875735	176875735	DDX41	5	C	C	T	31
RMND5B	64777	broad.mit.edu	36	5	177503619	177503619	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	177503619	177503619	RMND5B	5	C	C	G	25
CLK4	57396	broad.mit.edu	36	5	177983020	177983020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	177983020	177983020	CLK4	5	G	G	A	38
ZNF354B	117608	broad.mit.edu	36	5	178243672	178243672	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	178243672	178243672	ZNF354B	5	T	T	A	49
BAT1	7919	broad.mit.edu	36	6	31616213	31616213	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	31616213	31616213	BAT1	6	C	C	T	21
TBX18	9096	broad.mit.edu	36	6	85503762	85503762	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	85503762	85503762	TBX18	6	C	C	A	25
EPHA7	2045	broad.mit.edu	36	6	94038740	94038740	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	94038740	94038740	EPHA7	6	C	C	A	32
MCHR2	84539	broad.mit.edu	36	6	100475619	100475619	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	100475619	100475619	MCHR2	6	T	T	C	55
LAMA4	3910	broad.mit.edu	36	6	112613197	112613197	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	112613197	112613197	LAMA4	6	G	G	A	48
SP4	6671	broad.mit.edu	36	7	21436472	21436472	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	21436472	21436472	SP4	7	T	T	A	50
HERPUD2	64224	broad.mit.edu	36	7	35641447	35641447	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	35641447	35641447	HERPUD2	7	T	T	C	54
PKD1L1	168507	broad.mit.edu	36	7	47818010	47818010	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Nonsense_Mutation	SNP	47818010	47818010	PKD1L1	7	G	G	T	45
SEMA3E	9723	broad.mit.edu	36	7	82957428	82957428	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	82957428	82957428	SEMA3E	7	C	C	G	19
ZNF804B	219578	broad.mit.edu	36	7	88802287	88802287	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	88802287	88802287	ZNF804B	7	C	C	A	21
MUC17	140453	broad.mit.edu	36	7	100468359	100468359	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	100468359	100468359	MUC17	7	T	T	A	55
MOGAT3	346606	broad.mit.edu	36	7	100630814	100630814	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	100630814	100630814	MOGAT3	7	T	T	G	64
CUX1	1523	broad.mit.edu	36	7	101657399	101657399	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	101657399	101657399	CUX1	7	C	C	A	22
CCDC136	64753	broad.mit.edu	36	7	128240009	128240009	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	128240009	128240009	CCDC136	7	A	A	T	1
CNTNAP2	26047	broad.mit.edu	36	7	147231700	147231700	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	147231700	147231700	CNTNAP2	7	A	A	T	6
PDIA4	9601	broad.mit.edu	36	7	148347173	148347173	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	148347173	148347173	PDIA4	7	T	T	C	51
CHPF2	54480	broad.mit.edu	36	7	150562189	150562189	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	150562189	150562189	CHPF2	7	G	G	C	33
LZTS1	11178	broad.mit.edu	36	8	20154709	20154709	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	20154709	20154709	LZTS1	8	A	A	T	3
MPDZ	8777	broad.mit.edu	36	9	13214467	13214467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	13214467	13214467	MPDZ	9	C	C	A	22
FAM75A3	727830	broad.mit.edu	36	9	40694225	40694225	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	40694225	40694225	FAM75A3	9	G	G	A	41
SH2D3C	10044	broad.mit.edu	36	9	129551356	129551356	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	129551356	129551356	SH2D3C	9	C	C	A	22
FUBP3	8939	broad.mit.edu	36	9	132495968	132495968	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	132495968	132495968	FUBP3	9	C	C	A	26
GRPR	2925	broad.mit.edu	36	X	16078664	16078664	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	16078664	16078664	GRPR	23	T	T	A	50
GPR173	54328	broad.mit.edu	36	X	53122750	53122750	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	53122750	53122750	GPR173	23	C	C	T	32
HTR2C	3358	broad.mit.edu	36	X	114047420	114047420	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Missense_Mutation	SNP	114047420	114047420	HTR2C	23	C	C	T	24
GLUD2	2747	broad.mit.edu	36	X	120010098	120010098	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	120010098	120010098	GLUD2	23	A	A	G	15
GRIA3	2892	broad.mit.edu	36	X	122360239	122360239	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	122360239	122360239	GRIA3	23	A	A	G	11
ZIC3	7547	broad.mit.edu	36	X	136478821	136478821	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-0923-01	Broad	Silent	SNP	136478821	136478821	ZIC3	23	C	C	T	17
NBEA	26960	broad.mit.edu	36	13	34636551	34636567	+	Frame_Shift_Del	DEL	CATAACACAATTCACCT	-	CATAACACAATTCACCT	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0923-01	Broad	Frame_Shift_Del	DEL	34636551	34636567	NBEA	13	CATAACACAATTCACCT	-	CATAACACAATTCACCT	17
PTPRG	5793	broad.mit.edu	36	3	61523076	61523097	+	Splice_Site_Del	DEL	GTGCTTCCCCGGTGAGTGCCGG	-	GTGCTTCCCCGGTGAGTGCCGG	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0923-01	Broad	Splice_Site_Del	DEL	61523076	61523097	PTPRG	3	GTGCTTCCCCGGTGAGTGCCGG	-	GTGCTTCCCCGGTGAGTGCCGG	48
PHKA2	5256	broad.mit.edu	36	X	18879229	18879248	+	Frame_Shift_Del	DEL	GTGCCACAGGTGGCGGTGTT	-	GTGCCACAGGTGGCGGTGTT	novel	Unknown	TCGA-13-0923-01	TCGA-13-0923-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-0923-01	Broad	Frame_Shift_Del	DEL	18879229	18879248	PHKA2	23	GTGCCACAGGTGGCGGTGTT	-	GTGCCACAGGTGGCGGTGTT	40
