Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PRAMEF1	65121	broad.mit.edu	36	1	12777122	12777122	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	12777122	12777122	PRAMEF1	1	A	A	T	10
FABP3	2170	broad.mit.edu	36	1	31618432	31618432	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	31618432	31618432	FABP3	1	A	A	C	7
FAM46C	54855	broad.mit.edu	36	1	117967330	117967330	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	117967330	117967330	FAM46C	1	A	A	T	7
GON4L	54856	broad.mit.edu	36	1	153988537	153988537	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Nonsense_Mutation	SNP	153988537	153988537	GON4L	1	G	G	C	45
C1orf112	55732	broad.mit.edu	36	1	168083561	168083561	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	168083561	168083561	C1orf112	1	C	C	G	28
FLVCR1	28982	broad.mit.edu	36	1	211103748	211103748	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	211103748	211103748	FLVCR1	1	A	A	C	10
EDARADD	128178	broad.mit.edu	36	1	234712306	234712306	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	234712306	234712306	EDARADD	1	A	A	C	1
NEURL	9148	broad.mit.edu	36	10	105320752	105320752	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	105320752	105320752	NEURL	10	G	G	C	33
PIK3C2A	5286	broad.mit.edu	36	11	17114655	17114655	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	17114655	17114655	PIK3C2A	11	C	C	T	20
LRP4	4038	broad.mit.edu	36	11	46847186	46847186	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	46847186	46847186	LRP4	11	T	T	C	60
FNBP4	23360	broad.mit.edu	36	11	47702858	47702858	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	47702858	47702858	FNBP4	11	A	A	G	11
MS4A6A	64231	broad.mit.edu	36	11	59702353	59702353	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	59702353	59702353	MS4A6A	11	C	C	T	21
C11orf80	79703	broad.mit.edu	36	11	66338022	66338022	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	66338022	66338022	C11orf80	11	T	T	C	52
PGM2L1	283209	broad.mit.edu	36	11	73725393	73725393	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	73725393	73725393	PGM2L1	11	C	C	G	32
MRE11A	4361	broad.mit.edu	36	11	93849165	93849165	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	93849165	93849165	MRE11A	11	T	T	A	63
IL10RA	3587	broad.mit.edu	36	11	117369302	117369302	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	117369302	117369302	IL10RA	11	G	G	C	33
AICDA	57379	broad.mit.edu	36	12	8648783	8648783	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	8648783	8648783	AICDA	12	A	A	G	13
GRIN2B	2904	broad.mit.edu	36	12	13910020	13910020	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	13910020	13910020	GRIN2B	12	G	G	T	35
LRMP	4033	broad.mit.edu	36	12	25146435	25146435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	25146435	25146435	LRMP	12	A	A	T	2
KIF21A	55605	broad.mit.edu	36	12	37998229	37998229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	37998229	37998229	KIF21A	12	G	G	A	33
TIMELESS	8914	broad.mit.edu	36	12	55111012	55111012	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	55111012	55111012	TIMELESS	12	G	G	T	37
GLI1	2735	broad.mit.edu	36	12	56150731	56150731	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	56150731	56150731	GLI1	12	C	C	A	18
XPOT	11260	broad.mit.edu	36	12	63110318	63110318	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	63110318	63110318	XPOT	12	G	G	A	46
GLIPR1L2	144321	broad.mit.edu	36	12	74090508	74090508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	74090508	74090508	GLIPR1L2	12	G	G	C	46
CDK17	5128	broad.mit.edu	36	12	95212971	95212971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	95212971	95212971	CDK17	12	G	G	C	37
C12orf51	283450	broad.mit.edu	36	12	111152049	111152049	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	111152049	111152049	C12orf51	12	T	T	C	50
SACS	26278	broad.mit.edu	36	13	22812961	22812961	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	22812961	22812961	SACS	13	C	C	G	32
SLITRK1	114798	broad.mit.edu	36	13	83352093	83352093	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	83352093	83352093	SLITRK1	13	C	C	A	20
KLHDC1	122773	broad.mit.edu	36	14	49265981	49265981	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	49265981	49265981	KLHDC1	14	C	C	T	20
BDKRB1	623	broad.mit.edu	36	14	95799918	95799918	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	95799918	95799918	BDKRB1	14	T	T	C	62
TRPM7	54822	broad.mit.edu	36	15	48671444	48671444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	48671444	48671444	TRPM7	15	G	G	C	33
RORA	6095	broad.mit.edu	36	15	58611317	58611317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	58611317	58611317	RORA	15	C	C	G	32
KIAA1024	23251	broad.mit.edu	36	15	77537150	77537150	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	77537150	77537150	KIAA1024	15	G	G	T	36
AP3B2	8120	broad.mit.edu	36	15	81127729	81127729	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	81127729	81127729	AP3B2	15	G	G	A	46
C15orf42	90381	broad.mit.edu	36	15	87968095	87968095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	87968095	87968095	C15orf42	15	G	G	A	33
SRRM2	23524	broad.mit.edu	36	16	2752192	2752192	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	2752192	2752192	SRRM2	16	T	T	A	53
TBC1D10B	26000	broad.mit.edu	36	16	30288079	30288079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	30288079	30288079	TBC1D10B	16	G	G	A	41
NLRC5	84166	broad.mit.edu	36	16	55658804	55658804	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	55658804	55658804	NLRC5	16	G	G	C	42
ACD	65057	broad.mit.edu	36	16	66251600	66251600	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	66251600	66251600	ACD	16	G	G	C	35
RANBP10	57610	broad.mit.edu	36	16	66335794	66335794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	66335794	66335794	RANBP10	16	C	C	T	21
CNTNAP4	85445	broad.mit.edu	36	16	75086371	75086371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	75086371	75086371	CNTNAP4	16	C	C	G	32
ALOX15	246	broad.mit.edu	36	17	4489165	4489165	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	4489165	4489165	ALOX15	17	C	C	A	22
ZMYND15	84225	broad.mit.edu	36	17	4595395	4595395	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	4595395	4595395	ZMYND15	17	G	G	C	33
MYH4	4622	broad.mit.edu	36	17	10287540	10287540	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	10287540	10287540	MYH4	17	C	C	A	20
C17orf63	55731	broad.mit.edu	36	17	24110354	24110354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	24110354	24110354	C17orf63	17	G	G	T	43
CYGB	114757	broad.mit.edu	36	17	72039287	72039287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	72039287	72039287	CYGB	17	G	G	T	42
ANKRD12	23253	broad.mit.edu	36	18	9246624	9246624	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	9246624	9246624	ANKRD12	18	T	T	C	49
RIOK3	8780	broad.mit.edu	36	18	19298580	19298580	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	19298580	19298580	RIOK3	18	G	G	C	33
CDH20	28316	broad.mit.edu	36	18	57308945	57308945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	57308945	57308945	CDH20	18	G	G	C	34
FAM69C	125704	broad.mit.edu	36	18	70254719	70254719	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	70254719	70254719	FAM69C	18	C	C	A	20
EBI3	10148	broad.mit.edu	36	19	4180575	4180575	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	4180575	4180575	EBI3	19	G	G	C	48
TIMM44	10469	broad.mit.edu	36	19	7898971	7898971	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	7898971	7898971	TIMM44	19	G	G	A	48
ZNF121	7675	broad.mit.edu	36	19	9538491	9538491	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Nonsense_Mutation	SNP	9538491	9538491	ZNF121	19	G	G	A	45
OLFM2	93145	broad.mit.edu	36	19	9826216	9826216	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	9826216	9826216	OLFM2	19	G	G	C	47
TYK2	7297	broad.mit.edu	36	19	10334303	10334303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	10334303	10334303	TYK2	19	G	G	A	39
IL27RA	9466	broad.mit.edu	36	19	14023431	14023431	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	14023431	14023431	IL27RA	19	G	G	T	35
CILP2	148113	broad.mit.edu	36	19	19517673	19517673	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	19517673	19517673	CILP2	19	C	C	A	26
ANKRD27	84079	broad.mit.edu	36	19	37802272	37802272	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	37802272	37802272	ANKRD27	19	G	G	C	35
WDR88	126248	broad.mit.edu	36	19	38334001	38334001	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	38334001	38334001	WDR88	19	A	A	T	7
ZNF345	25850	broad.mit.edu	36	19	42060336	42060336	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	42060336	42060336	ZNF345	19	A	A	T	11
ADCY3	109	broad.mit.edu	36	2	24995288	24995288	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	24995288	24995288	ADCY3	2	G	G	A	42
POMC	5443	broad.mit.edu	36	2	25241012	25241012	+	Splice_Site_SNP	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			A	C	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Splice_Site_SNP	SNP	25241012	25241012	POMC	2	A	A	C	14
PLB1	151056	broad.mit.edu	36	2	28668118	28668118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	28668118	28668118	PLB1	2	G	G	C	46
SPR	6697	broad.mit.edu	36	2	72972028	72972028	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	72972028	72972028	SPR	2	G	G	A	40
ALMS1	7840	broad.mit.edu	36	2	73499950	73499950	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	73499950	73499950	ALMS1	2	G	G	T	46
SH3RF3	344558	broad.mit.edu	36	2	109330756	109330756	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	109330756	109330756	SH3RF3	2	C	C	T	19
SCN3A	6328	broad.mit.edu	36	2	165660402	165660402	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	165660402	165660402	SCN3A	2	A	A	G	13
DNAH7	56171	broad.mit.edu	36	2	196448711	196448711	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	196448711	196448711	DNAH7	2	A	A	G	8
MAP2	4133	broad.mit.edu	36	2	210226373	210226373	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	210226373	210226373	MAP2	2	G	G	A	34
RRBP1	6238	broad.mit.edu	36	20	17589138	17589138	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	17589138	17589138	RRBP1	20	G	G	A	48
C20orf26	26074	broad.mit.edu	36	20	20191721	20191721	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	20191721	20191721	C20orf26	20	A	A	T	11
SNAI1	6615	broad.mit.edu	36	20	48033829	48033829	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	48033829	48033829	SNAI1	20	G	G	C	33
PHACTR3	116154	broad.mit.edu	36	20	57751584	57751584	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	57751584	57751584	PHACTR3	20	G	G	A	40
MYT1	4661	broad.mit.edu	36	20	62318959	62318959	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	62318959	62318959	MYT1	20	A	A	G	11
MICAL3	57553	broad.mit.edu	36	22	16743984	16743984	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	16743984	16743984	MICAL3	22	T	T	C	51
SF3A1	10291	broad.mit.edu	36	22	29068210	29068210	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	29068210	29068210	SF3A1	22	C	C	A	30
CELSR3	1951	broad.mit.edu	36	3	48661230	48661230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	48661230	48661230	CELSR3	3	C	C	A	26
RBM6	10180	broad.mit.edu	36	3	50070975	50070975	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	50070975	50070975	RBM6	3	C	C	G	28
CADPS	8618	broad.mit.edu	36	3	62493715	62493715	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	62493715	62493715	CADPS	3	A	A	T	10
CD80	941	broad.mit.edu	36	3	120738700	120738700	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	120738700	120738700	CD80	3	A	A	T	6
CD86	942	broad.mit.edu	36	3	123305171	123305171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	123305171	123305171	CD86	3	T	T	G	56
SLC12A8	84561	broad.mit.edu	36	3	126391980	126391980	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	126391980	126391980	SLC12A8	3	C	C	A	30
MBD4	8930	broad.mit.edu	36	3	130638158	130638158	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	130638158	130638158	MBD4	3	T	T	C	64
P2RY12	64805	broad.mit.edu	36	3	152538631	152538631	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	152538631	152538631	P2RY12	3	C	C	A	30
GPR149	344758	broad.mit.edu	36	3	155629951	155629951	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	155629951	155629951	GPR149	3	C	C	A	22
LEKR1	389170	broad.mit.edu	36	3	158245839	158245839	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	158245839	158245839	LEKR1	3	A	A	G	11
TNIK	23043	broad.mit.edu	36	3	172294438	172294438	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	172294438	172294438	TNIK	3	G	G	T	41
FGFRL1	53834	broad.mit.edu	36	4	1006193	1006193	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	1006193	1006193	FGFRL1	4	C	C	T	23
RBM47	54502	broad.mit.edu	36	4	40135541	40135541	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	40135541	40135541	RBM47	4	C	C	A	22
FGB	2244	broad.mit.edu	36	4	155708244	155708244	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	155708244	155708244	FGB	4	A	A	G	4
BRD9	65980	broad.mit.edu	36	5	918625	918625	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	918625	918625	BRD9	5	C	C	A	30
RNASEN	29102	broad.mit.edu	36	5	31485180	31485180	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	31485180	31485180	RNASEN	5	T	T	A	58
NDST1	3340	broad.mit.edu	36	5	149881247	149881247	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	149881247	149881247	NDST1	5	C	C	T	23
FAT2	2196	broad.mit.edu	36	5	150897668	150897668	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	150897668	150897668	FAT2	5	T	T	A	49
SPARC	6678	broad.mit.edu	36	5	151027277	151027277	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	151027277	151027277	SPARC	5	T	T	A	59
COL23A1	91522	broad.mit.edu	36	5	177601947	177601947	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Splice_Site_SNP	SNP	177601947	177601947	COL23A1	5	C	C	A	18
BEND3	57673	broad.mit.edu	36	6	107497569	107497569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	107497569	107497569	BEND3	6	C	C	T	31
KIAA0408	9729	broad.mit.edu	36	6	127809856	127809856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	127809856	127809856	KIAA0408	6	C	C	T	24
TNFAIP3	7128	broad.mit.edu	36	6	138241536	138241536	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	138241536	138241536	TNFAIP3	6	C	C	G	28
RBAK	57786	broad.mit.edu	36	7	5071171	5071172	+	Missense_Mutation	DNP	TT	TT	AA	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			TT	AA	TT	TT	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	DNP	5071171	5071172	RBAK	7	TT	TT	AA	56
VPS41	27072	broad.mit.edu	36	7	38778646	38778646	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Splice_Site_SNP	SNP	38778646	38778646	VPS41	7	C	C	T	20
PPP1R3A	5506	broad.mit.edu	36	7	113307144	113307144	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	113307144	113307144	PPP1R3A	7	T	T	A	54
IMPDH1	3614	broad.mit.edu	36	7	127825757	127825757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	127825757	127825757	IMPDH1	7	C	C	T	29
MKLN1	4289	broad.mit.edu	36	7	130806223	130806223	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	130806223	130806223	MKLN1	7	G	G	C	33
CNPY1	285888	broad.mit.edu	36	7	154992530	154992530	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	154992530	154992530	CNPY1	7	G	G	A	36
SQLE	6713	broad.mit.edu	36	8	126080835	126080835	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			T	A	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Silent	SNP	126080835	126080835	SQLE	8	T	T	A	56
FLJ43860	389690	broad.mit.edu	36	8	142515252	142515252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	142515252	142515252	FLJ43860	8	G	G	T	44
SLC39A4	55630	broad.mit.edu	36	8	145608817	145608817	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	145608817	145608817	SLC39A4	8	G	G	A	41
TRPM6	140803	broad.mit.edu	36	9	76560104	76560104	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	76560104	76560104	TRPM6	9	T	T	C	63
PTGR1	22949	broad.mit.edu	36	9	113385599	113385599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	113385599	113385599	PTGR1	9	C	C	G	20
LMX1B	4010	broad.mit.edu	36	9	128495363	128495363	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Silent	SNP	128495363	128495363	LMX1B	9	C	C	A	21
KLHL13	90293	broad.mit.edu	36	X	116919851	116919851	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	116919851	116919851	KLHL13	23	C	C	A	17
DCAF12L2	340578	broad.mit.edu	36	X	125126337	125126337	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-13-1510-01	Broad	Missense_Mutation	SNP	125126337	125126337	DCAF12L2	23	C	C	A	18
FAP	2191	broad.mit.edu	36	2	162753120	162753156	+	Splice_Site_Del	DEL	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	-	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-1510-01	Broad	Splice_Site_Del	DEL	162753120	162753156	FAP	2	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	-	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	24
UTP3	57050	broad.mit.edu	36	4	71773283	71773295	+	Frame_Shift_Del	DEL	GGAGCAGCTAAGT	-	GGAGCAGCTAAGT	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-1510-01	Broad	Frame_Shift_Del	DEL	71773283	71773295	UTP3	4	GGAGCAGCTAAGT	-	GGAGCAGCTAAGT	39
GSTCD	79807	broad.mit.edu	36	4	106975103	106975127	+	Frame_Shift_Del	DEL	GTGATTGAGCACTGTATCAAAACAC	-	GTGATTGAGCACTGTATCAAAACAC	novel	Unknown	TCGA-13-1510-01	TCGA-13-1510-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-13-1510-01	Broad	Frame_Shift_Del	DEL	106975103	106975127	GSTCD	4	GTGATTGAGCACTGTATCAAAACAC	-	GTGATTGAGCACTGTATCAAAACAC	44
