Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PTPRF	5792	broad.mit.edu	36	1	43858402	43858402	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	43858402	43858402	PTPRF	1	G	G	C	37
ABL2	0	broad.mit.edu	36	1	177367172	177367172	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	177367172	177367172	ABL2	1	G	G	A	34
CEP350	9857	broad.mit.edu	36	1	178346811	178346811	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	178346811	178346811	CEP350	1	G	G	A	48
IGFN1	91156	broad.mit.edu	36	1	199449280	199449280	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	199449280	199449280	IGFN1	1	G	G	A	35
ANO9	338440	broad.mit.edu	36	11	423411	423411	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	423411	423411	ANO9	11	T	T	C	55
MRVI1	10335	broad.mit.edu	36	11	10587885	10587885	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	10587885	10587885	MRVI1	11	G	G	A	38
CST6	1474	broad.mit.edu	36	11	65536897	65536897	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	65536897	65536897	CST6	11	C	C	T	24
CASP4	837	broad.mit.edu	36	11	104325680	104325680	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	104325680	104325680	CASP4	11	C	C	G	32
GRIA4	2893	broad.mit.edu	36	11	104988219	104988219	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	104988219	104988219	GRIA4	11	T	T	C	54
CACNA1C	775	broad.mit.edu	36	12	2667995	2667995	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	2667995	2667995	CACNA1C	12	T	T	C	58
C12orf40	283461	broad.mit.edu	36	12	38362848	38362848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	38362848	38362848	C12orf40	12	C	C	A	18
OBFC2B	79035	broad.mit.edu	36	12	54909127	54909127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	54909127	54909127	OBFC2B	12	C	C	A	30
PAN2	9924	broad.mit.edu	36	12	55003406	55003406	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	55003406	55003406	PAN2	12	G	G	T	40
RIMBP2	23504	broad.mit.edu	36	12	129492506	129492506	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	129492506	129492506	RIMBP2	12	G	G	T	37
XPO4	64328	broad.mit.edu	36	13	20294414	20294414	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	20294414	20294414	XPO4	13	G	G	C	45
RB1	5925	broad.mit.edu	36	13	47839649	47839649	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Nonsense_Mutation	SNP	47839649	47839649	RB1	13	C	C	T	19
TTC5	91875	broad.mit.edu	36	14	19827741	19827741	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	19827741	19827741	TTC5	14	T	T	A	49
SALL2	6297	broad.mit.edu	36	14	21061409	21061409	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Nonsense_Mutation	SNP	21061409	21061409	SALL2	14	C	C	A	30
PMM2	5373	broad.mit.edu	36	16	8803258	8803258	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	8803258	8803258	PMM2	16	G	G	A	47
PARN	5073	broad.mit.edu	36	16	14438116	14438116	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	14438116	14438116	PARN	16	T	T	A	62
GTF3C1	2975	broad.mit.edu	36	16	27408567	27408567	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Splice_Site_SNP	SNP	27408567	27408567	GTF3C1	16	T	T	A	55
LPO	4025	broad.mit.edu	36	17	53684649	53684649	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	53684649	53684649	LPO	17	G	G	T	33
DDX42	11325	broad.mit.edu	36	17	59239996	59239996	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	59239996	59239996	DDX42	17	G	G	A	42
SRP68	6730	broad.mit.edu	36	17	71558199	71558199	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	71558199	71558199	SRP68	17	C	C	T	29
RNF157	114804	broad.mit.edu	36	17	71663969	71663969	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	71663969	71663969	RNF157	17	T	T	G	52
ABCA7	10347	broad.mit.edu	36	19	993357	993357	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	993357	993357	ABCA7	19	G	G	A	46
TUBB4	10382	broad.mit.edu	36	19	6446339	6446339	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	6446339	6446339	TUBB4	19	G	G	A	38
CENPO	79172	broad.mit.edu	36	2	24876153	24876153	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	24876153	24876153	CENPO	2	A	A	T	3
MYLK2	85366	broad.mit.edu	36	20	29878309	29878309	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	29878309	29878309	MYLK2	20	T	T	A	50
C20orf71	128861	broad.mit.edu	36	20	31269108	31269108	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	31269108	31269108	C20orf71	20	C	C	A	17
KCNJ6	3763	broad.mit.edu	36	21	38008854	38008854	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	38008854	38008854	KCNJ6	21	A	A	C	10
C3orf63	23272	broad.mit.edu	36	3	56642224	56642224	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Nonsense_Mutation	SNP	56642224	56642224	C3orf63	3	A	A	T	13
OSBPL11	114885	broad.mit.edu	36	3	126754155	126754155	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	126754155	126754155	OSBPL11	3	A	A	C	1
PPP2R3A	5523	broad.mit.edu	36	3	137204717	137204717	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	137204717	137204717	PPP2R3A	3	C	C	A	18
CC2D2A	57545	broad.mit.edu	36	4	15178202	15178202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	15178202	15178202	CC2D2A	4	A	A	C	7
NEK1	4750	broad.mit.edu	36	4	170634947	170634947	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	170634947	170634947	NEK1	4	T	T	A	52
UGT3A1	133688	broad.mit.edu	36	5	36001288	36001288	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	36001288	36001288	UGT3A1	5	T	T	C	49
HEATR7B2	133558	broad.mit.edu	36	5	41074650	41074650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	41074650	41074650	HEATR7B2	5	C	C	G	32
KCNN2	3781	broad.mit.edu	36	5	113836687	113836687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	113836687	113836687	KCNN2	5	C	C	T	25
PCDHGA3	56112	broad.mit.edu	36	5	140705880	140705880	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	140705880	140705880	PCDHGA3	5	C	C	T	27
HLA-E	3133	broad.mit.edu	36	6	30568322	30568322	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	30568322	30568322	HLA-E	6	G	G	A	36
TUBE1	51175	broad.mit.edu	36	6	112503940	112503940	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	112503940	112503940	TUBE1	6	C	C	T	28
CHD7	55636	broad.mit.edu	36	8	61898988	61898988	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	61898988	61898988	CHD7	8	C	C	T	21
STMN2	11075	broad.mit.edu	36	8	80716197	80716197	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	80716197	80716197	STMN2	8	G	G	A	46
TSPYL5	85453	broad.mit.edu	36	8	98358556	98358556	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Silent	SNP	98358556	98358556	TSPYL5	8	C	C	G	26
RIMS2	9699	broad.mit.edu	36	8	104997935	104997935	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	104997935	104997935	RIMS2	8	C	C	G	24
RNF20	56254	broad.mit.edu	36	9	103362966	103362966	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	103362966	103362966	RNF20	9	C	C	A	17
DFNB31	25861	broad.mit.edu	36	9	116204926	116204926	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	116204926	116204926	DFNB31	9	C	C	A	27
FAM47A	158724	broad.mit.edu	36	X	34060102	34060102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	34060102	34060102	FAM47A	23	C	C	T	27
H2BFWT	158983	broad.mit.edu	36	X	103154861	103154861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	103154861	103154861	H2BFWT	23	G	G	T	41
ARHGAP36	158763	broad.mit.edu	36	X	130046292	130046292	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01	TCGA-23-2079-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-23-2079-01	Broad	Missense_Mutation	SNP	130046292	130046292	ARHGAP36	23	G	G	A	36
