Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
CASZ1	54897	broad.mit.edu	36	1	10627589	10627589	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	10627589	10627589	CASZ1	1	G	G	A	45
PLA2G2F	64600	broad.mit.edu	36	1	20338596	20338596	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	20338596	20338596	PLA2G2F	1	G	G	T	43
TARS2	80222	broad.mit.edu	36	1	148737628	148737628	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	148737628	148737628	TARS2	1	C	C	T	30
OBSCN	84033	broad.mit.edu	36	1	226536469	226536469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	226536469	226536469	OBSCN	1	G	G	A	46
ANKRD30A	91074	broad.mit.edu	36	10	37548593	37548593	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	37548593	37548593	ANKRD30A	10	A	A	C	7
RASGEF1A	221002	broad.mit.edu	36	10	43016152	43016152	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	43016152	43016152	RASGEF1A	10	A	A	G	6
FAM190B	54462	broad.mit.edu	36	10	86121660	86121660	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	86121660	86121660	FAM190B	10	A	A	G	4
C10orf96	374355	broad.mit.edu	36	10	118091583	118091583	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	118091583	118091583	C10orf96	10	A	A	C	13
OR5F1	338674	broad.mit.edu	36	11	55518352	55518352	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	55518352	55518352	OR5F1	11	G	G	T	48
ZBTB3	79842	broad.mit.edu	36	11	62278032	62278032	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Nonsense_Mutation	SNP	62278032	62278032	ZBTB3	11	C	C	A	21
TCIRG1	10312	broad.mit.edu	36	11	67569068	67569068	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	67569068	67569068	TCIRG1	11	G	G	T	38
EED	8726	broad.mit.edu	36	11	85639051	85639051	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Silent	SNP	85639051	85639051	EED	11	A	A	G	5
ME3	10873	broad.mit.edu	36	11	85835783	85835783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	85835783	85835783	ME3	11	G	G	C	40
MMP27	64066	broad.mit.edu	36	11	102078699	102078699	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	102078699	102078699	MMP27	11	C	C	T	30
CD4	920	broad.mit.edu	36	12	6796678	6796678	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	6796678	6796678	CD4	12	G	G	T	43
PTHLH	5744	broad.mit.edu	36	12	28007615	28007615	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	28007615	28007615	PTHLH	12	T	T	C	58
PFKM	5213	broad.mit.edu	36	12	46815382	46815382	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Silent	SNP	46815382	46815382	PFKM	12	C	C	G	32
C12orf56	115749	broad.mit.edu	36	12	62955010	62955010	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	62955010	62955010	C12orf56	12	A	A	C	4
PABPC3	5042	broad.mit.edu	36	13	24568542	24568542	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	24568542	24568542	PABPC3	13	T	T	G	55
HSPH1	10808	broad.mit.edu	36	13	30624998	30624998	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	30624998	30624998	HSPH1	13	T	T	A	51
FREM2	341640	broad.mit.edu	36	13	38160554	38160554	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	38160554	38160554	FREM2	13	A	A	G	2
SCEL	8796	broad.mit.edu	36	13	77074235	77074235	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Nonsense_Mutation	SNP	77074235	77074235	SCEL	13	C	C	T	29
GMPR2	51292	broad.mit.edu	36	14	23777318	23777318	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	23777318	23777318	GMPR2	14	G	G	C	43
TGM1	7051	broad.mit.edu	36	14	23800742	23800743	+	Missense_Mutation	DNP	GA	GA	AT	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	DNP	23800742	23800743	TGM1	14	GA	GA	AT	37
XRCC3	7517	broad.mit.edu	36	14	103247142	103247142	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	103247142	103247142	XRCC3	14	A	A	C	13
CPNE2	221184	broad.mit.edu	36	16	55702215	55702215	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	55702215	55702215	CPNE2	16	G	G	C	36
EDC4	23644	broad.mit.edu	36	16	66470523	66470523	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	66470523	66470523	EDC4	16	A	A	G	1
NFATC3	4775	broad.mit.edu	36	16	66817872	66817872	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Silent	SNP	66817872	66817872	NFATC3	16	C	C	A	32
MPP2	4355	broad.mit.edu	36	17	39312259	39312259	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Nonsense_Mutation	SNP	39312259	39312259	MPP2	17	G	G	C	40
MAPT	4137	broad.mit.edu	36	17	41457217	41457217	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Silent	SNP	41457217	41457217	MAPT	17	C	C	T	18
TSEN54	283989	broad.mit.edu	36	17	71031999	71031999	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	71031999	71031999	TSEN54	17	G	G	T	48
DSG3	1830	broad.mit.edu	36	18	27293046	27293046	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	27293046	27293046	DSG3	18	T	T	C	49
LMAN1	3998	broad.mit.edu	36	18	55177244	55177244	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	55177244	55177244	LMAN1	18	C	C	A	30
RFX1	5989	broad.mit.edu	36	19	13940457	13940457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	13940457	13940457	RFX1	19	T	T	G	60
KIRREL2	84063	broad.mit.edu	36	19	41049062	41049062	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	41049062	41049062	KIRREL2	19	G	G	A	46
RYR1	6261	broad.mit.edu	36	19	43755730	43755730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	43755730	43755730	RYR1	19	A	A	T	11
FCGBP	8857	broad.mit.edu	36	19	45060417	45060417	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	45060417	45060417	FCGBP	19	G	G	A	40
POU2F2	5452	broad.mit.edu	36	19	47288114	47288114	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	47288114	47288114	POU2F2	19	G	G	T	42
B3GALT1	8708	broad.mit.edu	36	2	168434166	168434166	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	168434166	168434166	B3GALT1	2	C	C	A	24
DOCK10	55619	broad.mit.edu	36	2	225377139	225377139	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	225377139	225377139	DOCK10	2	G	G	T	44
SH3BP4	23677	broad.mit.edu	36	2	235615757	235615757	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	235615757	235615757	SH3BP4	2	G	G	A	35
GAS2L1	10634	broad.mit.edu	36	22	28037913	28037913	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	28037913	28037913	GAS2L1	22	C	C	A	21
SI	6476	broad.mit.edu	36	3	166265802	166265802	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	166265802	166265802	SI	3	G	G	A	37
PELO	53918	broad.mit.edu	36	5	52132066	52132066	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Nonsense_Mutation	SNP	52132066	52132066	PELO	5	G	G	A	42
FAM53C	51307	broad.mit.edu	36	5	137710422	137710422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	137710422	137710422	FAM53C	5	G	G	A	44
KDM3B	51780	broad.mit.edu	36	5	137755763	137755763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	137755763	137755763	KDM3B	5	A	A	G	4
PCDH12	51294	broad.mit.edu	36	5	141317388	141317388	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	141317388	141317388	PCDH12	5	C	C	G	25
GALNT10	55568	broad.mit.edu	36	5	153769293	153769293	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Splice_Site_SNP	SNP	153769293	153769293	GALNT10	5	G	G	T	33
GCM1	8521	broad.mit.edu	36	6	53104763	53104763	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Splice_Site_SNP	SNP	53104763	53104763	GCM1	6	C	C	A	18
ANKRD6	22881	broad.mit.edu	36	6	90383054	90383054	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	90383054	90383054	ANKRD6	6	A	A	G	1
AHI1	54806	broad.mit.edu	36	6	135829182	135829182	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	135829182	135829182	AHI1	6	A	A	G	3
IPCEF1	26034	broad.mit.edu	36	6	154628743	154628743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	154628743	154628743	IPCEF1	6	C	C	T	25
THSD7A	221981	broad.mit.edu	36	7	11385794	11385794	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	11385794	11385794	THSD7A	7	C	C	G	19
ZMIZ2	83637	broad.mit.edu	36	7	44765470	44765470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	44765470	44765470	ZMIZ2	7	C	C	T	21
SPAM1	6677	broad.mit.edu	36	7	123380877	123380877	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			T	G	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	123380877	123380877	SPAM1	7	T	T	G	62
EPPK1	83481	broad.mit.edu	36	8	145012717	145012717	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	145012717	145012717	EPPK1	8	C	C	T	25
OPLAH	26873	broad.mit.edu	36	8	145186837	145186837	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	145186837	145186837	OPLAH	8	G	G	A	40
GPR34	2857	broad.mit.edu	36	X	41440897	41440897	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	41440897	41440897	GPR34	23	C	C	G	20
FAAH2	158584	broad.mit.edu	36	X	57490193	57490193	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Silent	SNP	57490193	57490193	FAAH2	23	C	C	G	21
FAM123B	139285	broad.mit.edu	36	X	63326941	63326941	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	63326941	63326941	FAM123B	23	G	G	C	41
TAF1	6872	broad.mit.edu	36	X	70514835	70514835	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	70514835	70514835	TAF1	23	C	C	G	30
TCEAL2	140597	broad.mit.edu	36	X	101268629	101268629	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Silent	SNP	101268629	101268629	TCEAL2	23	G	G	A	40
TFDP3	51270	broad.mit.edu	36	X	132179527	132179527	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	132179527	132179527	TFDP3	23	C	C	G	28
MAGEA3	4102	broad.mit.edu	36	X	151686585	151686585	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-0975-01	Broad	Missense_Mutation	SNP	151686585	151686585	MAGEA3	23	A	A	C	7
TP53	7157	broad.mit.edu	36	17	7519000	7519002	+	In_Frame_Del	DEL	GAG	GAG	-	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-0975-01	Broad	In_Frame_Del	DEL	7519000	7519002	TP53	17	GAG	GAG	-	45
PSTPIP1	9051	broad.mit.edu	36	15	75116508	75116509	+	Frame_Shift_Ins	INS	-	AAGT	AAGT	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-0975-01	Broad	Frame_Shift_Ins	INS	75116508	75116509	PSTPIP1	15	-	AAGT	AAGT	47
ITFG3	83986	broad.mit.edu	36	16	253326	253333	+	Frame_Shift_Del	DEL	GGCTCAGA	-	GGCTCAGA	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-0975-01	Broad	Frame_Shift_Del	DEL	253326	253333	ITFG3	16	GGCTCAGA	-	GGCTCAGA	43
ZFPM1	161882	broad.mit.edu	36	16	87128758	87128767	+	Frame_Shift_Del	DEL	CGCCGGCGCC	-	CGCCGGCGCC	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-0975-01	Broad	Frame_Shift_Del	DEL	87128758	87128767	ZFPM1	16	CGCCGGCGCC	-	CGCCGGCGCC	19
SON	6651	broad.mit.edu	36	21	33847489	33847492	+	Frame_Shift_Del	DEL	AGTC	-	AGTC	novel	Unknown	TCGA-24-0975-01	TCGA-24-0975-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-0975-01	Broad	Frame_Shift_Del	DEL	33847489	33847492	SON	21	AGTC	-	AGTC	11
