Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
LYPLA2	11313	broad.mit.edu	36	1	23993658	23993658	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	23993658	23993658	LYPLA2	1	T	T	C	51
CD1B	910	broad.mit.edu	36	1	156565384	156565384	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	156565384	156565384	CD1B	1	G	G	A	42
DPT	1805	broad.mit.edu	36	1	166950153	166950153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	166950153	166950153	DPT	1	C	C	G	31
HMCN1	83872	broad.mit.edu	36	1	184100339	184100339	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	184100339	184100339	HMCN1	1	C	C	A	28
DENND1B	163486	broad.mit.edu	36	1	195747698	195747698	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Splice_Site_SNP	SNP	195747698	195747698	DENND1B	1	C	C	T	24
SUV39H2	79723	broad.mit.edu	36	10	14979166	14979166	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			C	G	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	14979166	14979166	SUV39H2	10	C	C	G	22
SORBS1	10580	broad.mit.edu	36	10	97086835	97086835	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	97086835	97086835	SORBS1	10	T	T	A	59
CDON	50937	broad.mit.edu	36	11	125398520	125398520	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	125398520	125398520	CDON	11	G	G	C	33
NECAP1	25977	broad.mit.edu	36	12	8136905	8136905	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	8136905	8136905	NECAP1	12	A	A	G	11
SCN8A	6334	broad.mit.edu	36	12	50470514	50470514	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	50470514	50470514	SCN8A	12	G	G	C	47
NBEA	26960	broad.mit.edu	36	13	34513220	34513220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	34513220	34513220	NBEA	13	C	C	T	31
LRRK1	79705	broad.mit.edu	36	15	99410657	99410657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	99410657	99410657	LRRK1	15	C	C	G	24
PALB2	79728	broad.mit.edu	36	16	23553912	23553912	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			T	C	T	T	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	23553912	23553912	PALB2	16	T	T	C	61
SNX20	124460	broad.mit.edu	36	16	49268884	49268884	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	49268884	49268884	SNX20	16	A	A	G	6
MMP2	4313	broad.mit.edu	36	16	54081185	54081185	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	54081185	54081185	MMP2	16	G	G	A	37
TP53	7157	broad.mit.edu	36	17	7518261	7518261	+	Missense_Mutation	SNP	T	T	C	rs67185453	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	7518261	7518261	TP53	17	T	T	C	54
CDK12	51755	broad.mit.edu	36	17	34929759	34929759	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			A	T	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	34929759	34929759	CDK12	17	A	A	T	16
DLGAP1	9229	broad.mit.edu	36	18	3869507	3869507	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	3869507	3869507	DLGAP1	18	G	G	A	38
ZNF536	9745	broad.mit.edu	36	19	35626726	35626726	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	35626726	35626726	ZNF536	19	C	C	T	30
ZSWIM3	140831	broad.mit.edu	36	20	43940621	43940621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	43940621	43940621	ZSWIM3	20	C	C	T	23
KRTAP10-9	386676	broad.mit.edu	36	21	44872235	44872235	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	44872235	44872235	KRTAP10-9	21	G	G	A	35
IQSEC1	9922	broad.mit.edu	36	3	12932152	12932152	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	12932152	12932152	IQSEC1	3	T	T	C	52
SEMA3G	56920	broad.mit.edu	36	3	52447095	52447095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	52447095	52447095	SEMA3G	3	C	C	T	27
SI	6476	broad.mit.edu	36	3	166267825	166267825	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	166267825	166267825	SI	3	G	G	A	36
PIGG	54872	broad.mit.edu	36	4	505043	505043	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	505043	505043	PIGG	4	G	G	A	43
ANP32C	23520	broad.mit.edu	36	4	165337616	165337616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	165337616	165337616	ANP32C	4	C	C	T	31
CDH18	1016	broad.mit.edu	36	5	19519330	19519330	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	19519330	19519330	CDH18	5	A	A	T	6
EPB41L4A	64097	broad.mit.edu	36	5	111532600	111532600	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	111532600	111532600	EPB41L4A	5	G	G	A	37
AFF4	27125	broad.mit.edu	36	5	132298123	132298123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	132298123	132298123	AFF4	5	G	G	C	33
FLT4	2324	broad.mit.edu	36	5	179981457	179981457	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	179981457	179981457	FLT4	5	C	C	T	22
GCNT2	2651	broad.mit.edu	36	6	10664686	10664686	+	Missense_Mutation	SNP	G	G	A	rs55786982	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	10664686	10664686	GCNT2	6	G	G	A	36
HIST1H3B	8358	broad.mit.edu	36	6	26139918	26139918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	26139918	26139918	HIST1H3B	6	C	C	T	31
HLA-E	3133	broad.mit.edu	36	6	30565666	30565666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	30565666	30565666	HLA-E	6	G	G	A	43
GPR115	221393	broad.mit.edu	36	6	47788128	47788128	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	47788128	47788128	GPR115	6	A	A	G	11
FAM83B	222584	broad.mit.edu	36	6	54912525	54912525	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	54912525	54912525	FAM83B	6	T	T	C	60
KCNQ5	56479	broad.mit.edu	36	6	73843871	73843871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	73843871	73843871	KCNQ5	6	G	G	A	38
FIGNL1	63979	broad.mit.edu	36	7	50482427	50482427	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	50482427	50482427	FIGNL1	7	T	T	A	57
COBL	23242	broad.mit.edu	36	7	51063831	51063831	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	51063831	51063831	COBL	7	T	T	G	56
AKAP9	10142	broad.mit.edu	36	7	91550465	91550465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	91550465	91550465	AKAP9	7	G	G	T	36
SGCE	8910	broad.mit.edu	36	7	94086198	94086198	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	94086198	94086198	SGCE	7	G	G	A	39
MLL5	55904	broad.mit.edu	36	7	104536839	104536839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	104536839	104536839	MLL5	7	C	C	G	32
KIAA1549	57670	broad.mit.edu	36	7	138253089	138253089	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	138253089	138253089	KIAA1549	7	C	C	T	19
PCM1	5108	broad.mit.edu	36	8	17857267	17857267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	17857267	17857267	PCM1	8	C	C	G	17
ZFHX4	79776	broad.mit.edu	36	8	77924389	77924389	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	77924389	77924389	ZFHX4	8	G	G	T	39
NDRG1	10397	broad.mit.edu	36	8	134365720	134365720	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	134365720	134365720	NDRG1	8	T	T	C	55
MPDZ	8777	broad.mit.edu	36	9	13214504	13214504	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			G	C	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	13214504	13214504	MPDZ	9	G	G	C	33
C9orf79	286234	broad.mit.edu	36	9	89691825	89691825	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	89691825	89691825	C9orf79	9	C	C	T	23
SPTAN1	6709	broad.mit.edu	36	9	130428779	130428779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	130428779	130428779	SPTAN1	9	A	A	G	4
FRMPD4	9758	broad.mit.edu	36	X	12622478	12622478	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	12622478	12622478	FRMPD4	23	A	A	G	11
LAS1L	81887	broad.mit.edu	36	X	64660209	64660209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-1466-01	Broad	Silent	SNP	64660209	64660209	LAS1L	23	G	G	A	35
PHKA1	5255	broad.mit.edu	36	X	71781000	71781000	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-24-1466-01	Broad	Missense_Mutation	SNP	71781000	71781000	PHKA1	23	C	C	A	25
NAV1	89796	broad.mit.edu	36	1	200016216	200016219	+	Frame_Shift_Del	DEL	CAGA	-	CAGA	novel	Unknown	TCGA-24-1466-01	TCGA-24-1466-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-1466-01	Broad	Frame_Shift_Del	DEL	200016216	200016219	NAV1	1	CAGA	-	CAGA	29
