Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RERE	473	broad.mit.edu	36	1	8477741	8477741	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	8477741	8477741	RERE	1	C	C	T	23
ARHGEF19	128272	broad.mit.edu	36	1	16407167	16407167	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	16407167	16407167	ARHGEF19	1	G	G	C	39
HSPG2	3339	broad.mit.edu	36	1	22031587	22031587	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	22031587	22031587	HSPG2	1	C	C	T	24
TMEM39B	55116	broad.mit.edu	36	1	32333107	32333107	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	32333107	32333107	TMEM39B	1	G	G	C	43
MACF1	23499	broad.mit.edu	36	1	39579069	39579069	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	39579069	39579069	MACF1	1	G	G	C	36
KNCN	148930	broad.mit.edu	36	1	46789436	46789436	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	46789436	46789436	KNCN	1	C	C	A	25
TNNI3K	51086	broad.mit.edu	36	1	74581390	74581390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	74581390	74581390	TNNI3K	1	C	C	G	21
DNAJB4	11080	broad.mit.edu	36	1	78254490	78254490	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	78254490	78254490	DNAJB4	1	G	G	T	36
REG4	83998	broad.mit.edu	36	1	120143975	120143975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	120143975	120143975	REG4	1	G	G	C	35
GON4L	54856	broad.mit.edu	36	1	153998658	153998658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	153998658	153998658	GON4L	1	C	C	T	32
ABL2	0	broad.mit.edu	36	1	177369080	177369080	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	177369080	177369080	ABL2	1	G	G	A	46
TUBB8	347688	broad.mit.edu	36	10	83410	83410	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	83410	83410	TUBB8	10	C	C	A	23
SFMBT2	57713	broad.mit.edu	36	10	7449840	7449840	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	7449840	7449840	SFMBT2	10	C	C	G	32
ITIH5	80760	broad.mit.edu	36	10	7658958	7658958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	7658958	7658958	ITIH5	10	G	G	A	39
SLC39A12	221074	broad.mit.edu	36	10	18320236	18320236	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	18320236	18320236	SLC39A12	10	A	A	G	5
EPC1	80314	broad.mit.edu	36	10	32620219	32620219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	32620219	32620219	EPC1	10	C	C	G	29
ZNF248	57209	broad.mit.edu	36	10	38160907	38160907	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	38160907	38160907	ZNF248	10	T	T	C	54
FRMPD2	0	broad.mit.edu	36	10	49051061	49051061	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	49051061	49051061	FRMPD2	10	G	G	T	40
NRG3	10718	broad.mit.edu	36	10	83625517	83625517	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	83625517	83625517	NRG3	10	C	C	A	24
CRTAC1	55118	broad.mit.edu	36	10	99645147	99645147	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	99645147	99645147	CRTAC1	10	T	T	A	60
TACC2	10579	broad.mit.edu	36	10	123893177	123893177	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	123893177	123893177	TACC2	10	C	C	G	30
OR4C46	119749	broad.mit.edu	36	11	51372631	51372631	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	51372631	51372631	OR4C46	11	A	A	T	10
MYO7A	4647	broad.mit.edu	36	11	76544673	76544673	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	76544673	76544673	MYO7A	11	C	C	A	23
GRIA4	2893	broad.mit.edu	36	11	105309706	105309706	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	105309706	105309706	GRIA4	11	G	G	C	34
MLL	4297	broad.mit.edu	36	11	117881432	117881432	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	117881432	117881432	MLL	11	C	C	A	26
FAM118B	79607	broad.mit.edu	36	11	125631830	125631830	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	125631830	125631830	FAM118B	11	G	G	C	36
ETS1	2113	broad.mit.edu	36	11	127860089	127860089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	127860089	127860089	ETS1	11	G	G	C	43
CHD4	1108	broad.mit.edu	36	12	6577472	6577472	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	6577472	6577472	CHD4	12	C	C	G	30
EPS8	2059	broad.mit.edu	36	12	15702324	15702324	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	15702324	15702324	EPS8	12	T	T	C	53
SLC38A4	55089	broad.mit.edu	36	12	45459712	45459712	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	45459712	45459712	SLC38A4	12	A	A	C	5
VDR	7421	broad.mit.edu	36	12	46537571	46537571	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	46537571	46537571	VDR	12	C	C	A	31
GDF11	10220	broad.mit.edu	36	12	54423637	54423637	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	54423637	54423637	GDF11	12	G	G	A	35
DCTN2	10540	broad.mit.edu	36	12	56215838	56215838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	56215838	56215838	DCTN2	12	C	C	G	29
ACTR6	64431	broad.mit.edu	36	12	99122956	99122956	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	99122956	99122956	ACTR6	12	C	C	A	24
MYBPC1	4604	broad.mit.edu	36	12	100598386	100598386	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	100598386	100598386	MYBPC1	12	A	A	G	3
SLITRK1	114798	broad.mit.edu	36	13	83352936	83352936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	83352936	83352936	SLITRK1	13	G	G	A	37
LIG4	3981	broad.mit.edu	36	13	107660143	107660143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	107660143	107660143	LIG4	13	G	G	A	35
OR4K13	390433	broad.mit.edu	36	14	19571935	19571935	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	19571935	19571935	OR4K13	14	A	A	G	13
SLC10A1	6554	broad.mit.edu	36	14	69333346	69333346	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	69333346	69333346	SLC10A1	14	A	A	C	3
C14orf145	145508	broad.mit.edu	36	14	80367273	80367273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	80367273	80367273	C14orf145	14	G	G	T	48
BTBD7	55727	broad.mit.edu	36	14	92778882	92778882	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	92778882	92778882	BTBD7	14	G	G	A	46
SLC12A6	9990	broad.mit.edu	36	15	32315550	32315550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	32315550	32315550	SLC12A6	15	G	G	A	38
HDC	3067	broad.mit.edu	36	15	48331931	48331931	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	48331931	48331931	HDC	15	G	G	A	47
ADAMTS7	11173	broad.mit.edu	36	15	76854143	76854143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	76854143	76854143	ADAMTS7	15	C	C	T	27
DNAH3	55567	broad.mit.edu	36	16	21064853	21064853	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	21064853	21064853	DNAH3	16	G	G	T	42
SRCAP	10847	broad.mit.edu	36	16	30642767	30642767	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	30642767	30642767	SRCAP	16	A	A	C	15
TP53	7157	broad.mit.edu	36	17	7518257	7518257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	7518257	7518257	TP53	17	G	G	A	43
AATF	26574	broad.mit.edu	36	17	32384555	32384555	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	32384555	32384555	AATF	17	G	G	C	47
NME1-NME2	4831	broad.mit.edu	36	17	46600614	46600614	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	46600614	46600614	NME1-NME2	17	C	C	A	17
MRPL54	116541	broad.mit.edu	36	19	3713782	3713782	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	3713782	3713782	MRPL54	19	A	A	T	9
RANBP3	8498	broad.mit.edu	36	19	5872277	5872277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	5872277	5872277	RANBP3	19	C	C	T	26
CD209	30835	broad.mit.edu	36	19	7713996	7713996	+	Missense_Mutation	SNP	C	C	T	rs11465393	byFrequency;byHapMap	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	7713996	7713996	CD209	19	C	C	T	28
MUC16	94025	broad.mit.edu	36	19	8943391	8943391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	8943391	8943391	MUC16	19	C	C	T	32
ILF3	3609	broad.mit.edu	36	19	10650834	10650834	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	10650834	10650834	ILF3	19	C	C	G	20
MAP4K1	11184	broad.mit.edu	36	19	43770262	43770262	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	43770262	43770262	MAP4K1	19	G	G	A	35
NLRP13	126204	broad.mit.edu	36	19	61128189	61128189	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	61128189	61128189	NLRP13	19	T	T	G	63
GEN1	348654	broad.mit.edu	36	2	17806287	17806287	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	17806287	17806287	GEN1	2	C	C	G	32
APOB	338	broad.mit.edu	36	2	21078462	21078462	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	21078462	21078462	APOB	2	C	C	G	32
APOB	338	broad.mit.edu	36	2	21088287	21088287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	21088287	21088287	APOB	2	G	G	T	33
SULT1C2	6819	broad.mit.edu	36	2	108276684	108276684	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	108276684	108276684	SULT1C2	2	C	C	A	29
TANC1	85461	broad.mit.edu	36	2	159794529	159794529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	159794529	159794529	TANC1	2	G	G	T	42
TANC1	85461	broad.mit.edu	36	2	159795659	159795659	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	159795659	159795659	TANC1	2	C	C	G	32
COL5A2	1290	broad.mit.edu	36	2	189635838	189635838	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	189635838	189635838	COL5A2	2	G	G	A	42
SPHKAP	80309	broad.mit.edu	36	2	228563965	228563965	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	228563965	228563965	SPHKAP	2	C	C	G	29
COL6A3	1293	broad.mit.edu	36	2	237939103	237939103	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	237939103	237939103	COL6A3	2	G	G	C	48
TOP1	7150	broad.mit.edu	36	20	39178373	39178373	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	39178373	39178373	TOP1	20	C	C	G	28
PTGIS	5740	broad.mit.edu	36	20	47564290	47564290	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	47564290	47564290	PTGIS	20	T	T	C	52
ADAMTS1	9510	broad.mit.edu	36	21	27138624	27138624	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	27138624	27138624	ADAMTS1	21	C	C	T	22
NUP210	23225	broad.mit.edu	36	3	13338792	13338792	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	13338792	13338792	NUP210	3	C	C	G	32
UBP1	7342	broad.mit.edu	36	3	33456238	33456238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	33456238	33456238	UBP1	3	C	C	A	28
ZBTB47	92999	broad.mit.edu	36	3	42680326	42680326	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	42680326	42680326	ZBTB47	3	C	C	G	28
COL7A1	1294	broad.mit.edu	36	3	48589336	48589336	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	48589336	48589336	COL7A1	3	G	G	A	38
CELSR3	1951	broad.mit.edu	36	3	48674196	48674196	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	48674196	48674196	CELSR3	3	C	C	T	26
KIAA2018	205717	broad.mit.edu	36	3	114861540	114861540	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	114861540	114861540	KIAA2018	3	G	G	T	44
IFT122	55764	broad.mit.edu	36	3	130678335	130678335	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Splice_Site_SNP	SNP	130678335	130678335	IFT122	3	G	G	T	44
PLCH1	23007	broad.mit.edu	36	3	156694660	156694660	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	156694660	156694660	PLCH1	3	A	A	C	5
BCHE	590	broad.mit.edu	36	3	167031189	167031189	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	167031189	167031189	BCHE	3	C	C	G	17
MFN1	55669	broad.mit.edu	36	3	180579085	180579085	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	180579085	180579085	MFN1	3	T	T	C	56
CCDC39	339829	broad.mit.edu	36	3	181832026	181832026	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	181832026	181832026	CCDC39	3	T	T	C	50
EPHB3	2049	broad.mit.edu	36	3	185773023	185773023	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	185773023	185773023	EPHB3	3	C	C	A	22
HTT	3064	broad.mit.edu	36	4	3191722	3191722	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	3191722	3191722	HTT	4	T	T	A	51
CNGA1	1259	broad.mit.edu	36	4	47633341	47633341	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Nonsense_Mutation	SNP	47633341	47633341	CNGA1	4	G	G	A	39
KIT	3815	broad.mit.edu	36	4	55264810	55264810	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	55264810	55264810	KIT	4	T	T	G	57
METAP1	23173	broad.mit.edu	36	4	100179587	100179587	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	100179587	100179587	METAP1	4	A	A	C	7
GUCY1B3	2983	broad.mit.edu	36	4	156943097	156943097	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	156943097	156943097	GUCY1B3	4	C	C	G	21
SLC45A2	51151	broad.mit.edu	36	5	33999621	33999621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	33999621	33999621	SLC45A2	5	C	C	A	20
MGC42105	167359	broad.mit.edu	36	5	43316048	43316048	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	43316048	43316048	MGC42105	5	G	G	C	47
VCAN	1462	broad.mit.edu	36	5	82870305	82870305	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	82870305	82870305	VCAN	5	A	A	G	7
PCDHGB4	8641	broad.mit.edu	36	5	140749606	140749606	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	140749606	140749606	PCDHGB4	5	G	G	A	40
AFAP1L1	134265	broad.mit.edu	36	5	148676037	148676037	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	148676037	148676037	AFAP1L1	5	C	C	A	23
PPARGC1B	133522	broad.mit.edu	36	5	149180263	149180263	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	149180263	149180263	PPARGC1B	5	C	C	A	20
TIGD6	81789	broad.mit.edu	36	5	149355814	149355814	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	149355814	149355814	TIGD6	5	A	A	G	7
OR10C1	442194	broad.mit.edu	36	6	29516691	29516691	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	29516691	29516691	OR10C1	6	C	C	T	19
PSORS1C2	170680	broad.mit.edu	36	6	31213944	31213944	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	31213944	31213944	PSORS1C2	6	G	G	C	43
CUL9	23113	broad.mit.edu	36	6	43282202	43282202	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	43282202	43282202	CUL9	6	C	C	T	23
DOPEY1	23033	broad.mit.edu	36	6	83902315	83902315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	83902315	83902315	DOPEY1	6	T	T	C	51
PLEKHG1	57480	broad.mit.edu	36	6	151194350	151194350	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	151194350	151194350	PLEKHG1	6	C	C	A	30
SKAP2	8935	broad.mit.edu	36	7	26676276	26676276	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	26676276	26676276	SKAP2	7	T	T	C	61
TYW1	55253	broad.mit.edu	36	7	66169767	66169767	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	66169767	66169767	TYW1	7	C	C	G	31
RSBN1L	222194	broad.mit.edu	36	7	77245929	77245929	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	77245929	77245929	RSBN1L	7	T	T	A	60
ANKRD7	56311	broad.mit.edu	36	7	117667234	117667234	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	117667234	117667234	ANKRD7	7	A	A	C	9
C7orf45	136263	broad.mit.edu	36	7	129643285	129643285	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Silent	SNP	129643285	129643285	C7orf45	7	A	A	G	3
CHPF2	54480	broad.mit.edu	36	7	150565781	150565781	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	150565781	150565781	CHPF2	7	G	G	C	34
GSR	2936	broad.mit.edu	36	8	30670114	30670114	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	30670114	30670114	GSR	8	C	C	G	18
WHSC1L1	54904	broad.mit.edu	36	8	38314066	38314066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	38314066	38314066	WHSC1L1	8	C	C	G	21
PXDNL	137902	broad.mit.edu	36	8	52414735	52414735	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Splice_Site_SNP	SNP	52414735	52414735	PXDNL	8	A	A	G	2
CSMD3	114788	broad.mit.edu	36	8	113638303	113638303	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	113638303	113638303	CSMD3	8	T	T	A	55
FREM1	158326	broad.mit.edu	36	9	14841551	14841551	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	14841551	14841551	FREM1	9	G	G	C	41
PMPCA	23203	broad.mit.edu	36	9	138428909	138428909	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	138428909	138428909	PMPCA	9	C	C	T	22
LONRF3	79836	broad.mit.edu	36	X	117993496	117993496	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	117993496	117993496	LONRF3	23	G	G	C	37
SLITRK4	139065	broad.mit.edu	36	X	142544276	142544276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	142544276	142544276	SLITRK4	23	A	A	G	16
MAGEA11	4110	broad.mit.edu	36	X	148576687	148576687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	148576687	148576687	MAGEA11	23	C	C	T	28
MAMLD1	10046	broad.mit.edu	36	X	149389665	149389665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2288-01	Broad	Missense_Mutation	SNP	149389665	149389665	MAMLD1	23	C	C	G	20
MSH2	4436	broad.mit.edu	36	2	47558954	47558954	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2288-01	TCGA-24-2288-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2288-01	Broad	Frame_Shift_Del	DEL	47558954	47558954	MSH2	2	G	-	G	47
