Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ZBTB17	7709	broad.mit.edu	36	1	16141745	16141745	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	16141745	16141745	ZBTB17	1	G	G	C	44
HTR6	3362	broad.mit.edu	36	1	19878209	19878209	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	19878209	19878209	HTR6	1	C	C	T	26
USP48	84196	broad.mit.edu	36	1	21889074	21889074	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Nonsense_Mutation	SNP	21889074	21889074	USP48	1	C	C	A	29
CYP4A11	1579	broad.mit.edu	36	1	47173847	47173847	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	47173847	47173847	CYP4A11	1	G	G	A	35
VAV3	10451	broad.mit.edu	36	1	108308902	108308902	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	108308902	108308902	VAV3	1	C	C	G	27
SHE	126669	broad.mit.edu	36	1	152738320	152738320	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	152738320	152738320	SHE	1	A	A	G	15
FLAD1	80308	broad.mit.edu	36	1	153227530	153227530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	153227530	153227530	FLAD1	1	C	C	A	17
CD55	1604	broad.mit.edu	36	1	205562361	205562361	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	205562361	205562361	CD55	1	C	C	A	24
OBSCN	84033	broad.mit.edu	36	1	226468736	226468736	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	226468736	226468736	OBSCN	1	G	G	T	40
CYP26C1	340665	broad.mit.edu	36	10	94818155	94818156	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	DNP	94818155	94818156	CYP26C1	10	GC	GC	AT	42
DCHS1	8642	broad.mit.edu	36	11	6603232	6603232	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	6603232	6603232	DCHS1	11	G	G	T	44
METT5D1	196074	broad.mit.edu	36	11	28091605	28091605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	28091605	28091605	METT5D1	11	G	G	T	33
ARFGAP2	84364	broad.mit.edu	36	11	47153380	47153380	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Nonsense_Mutation	SNP	47153380	47153380	ARFGAP2	11	G	G	A	39
GDPD5	81544	broad.mit.edu	36	11	74831132	74831132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	74831132	74831132	GDPD5	11	C	C	T	23
MYO7A	4647	broad.mit.edu	36	11	76578081	76578081	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	76578081	76578081	MYO7A	11	C	C	A	22
FLI1	2313	broad.mit.edu	36	11	128185915	128185915	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	128185915	128185915	FLI1	11	A	A	G	6
NCAPD3	23310	broad.mit.edu	36	11	133595723	133595723	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	133595723	133595723	NCAPD3	11	A	A	T	15
CD9	928	broad.mit.edu	36	12	6179991	6179991	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	6179991	6179991	CD9	12	G	G	T	47
LPAR5	57121	broad.mit.edu	36	12	6600556	6600556	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	6600556	6600556	LPAR5	12	G	G	T	40
ESPL1	9700	broad.mit.edu	36	12	51962339	51962339	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	51962339	51962339	ESPL1	12	C	C	T	28
ITGA7	3679	broad.mit.edu	36	12	54378838	54378838	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	54378838	54378838	ITGA7	12	G	G	A	39
GNPTAB	79158	broad.mit.edu	36	12	100679486	100679486	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	100679486	100679486	GNPTAB	12	C	C	T	32
DRAM1	55332	broad.mit.edu	36	12	100839133	100839133	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	100839133	100839133	DRAM1	12	C	C	A	22
ALG11	440138	broad.mit.edu	36	13	51491265	51491265	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	51491265	51491265	ALG11	13	G	G	C	33
PCDH9	5101	broad.mit.edu	36	13	66697664	66697664	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	66697664	66697664	PCDH9	13	G	G	T	48
RPGRIP1	57096	broad.mit.edu	36	14	20889180	20889180	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	20889180	20889180	RPGRIP1	14	A	A	G	16
AKAP6	9472	broad.mit.edu	36	14	32361192	32361192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	32361192	32361192	AKAP6	14	A	A	C	3
SRP54	6729	broad.mit.edu	36	14	34561934	34561934	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	34561934	34561934	SRP54	14	A	A	G	11
FUT8	2530	broad.mit.edu	36	14	65205925	65205925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	65205925	65205925	FUT8	14	C	C	T	32
TRIP11	9321	broad.mit.edu	36	14	91540959	91540959	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	91540959	91540959	TRIP11	14	C	C	A	32
ADSSL1	122622	broad.mit.edu	36	14	104278509	104278509	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	104278509	104278509	ADSSL1	14	A	A	G	11
PACS2	23241	broad.mit.edu	36	14	104885875	104885875	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	104885875	104885875	PACS2	14	G	G	T	44
PLA2G4F	255189	broad.mit.edu	36	15	40230176	40230176	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	40230176	40230176	PLA2G4F	15	G	G	C	47
ADCY9	115	broad.mit.edu	36	16	4104976	4104976	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	4104976	4104976	ADCY9	16	C	C	A	17
MYH13	8735	broad.mit.edu	36	17	10164398	10164398	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	10164398	10164398	MYH13	17	C	C	A	29
BLMH	642	broad.mit.edu	36	17	25636584	25636584	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	25636584	25636584	BLMH	17	C	C	G	20
FNDC8	54752	broad.mit.edu	36	17	30473028	30473028	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	30473028	30473028	FNDC8	17	A	A	T	2
JMJD6	23210	broad.mit.edu	36	17	72234131	72234131	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	72234131	72234131	JMJD6	17	G	G	T	38
DNAH17	8632	broad.mit.edu	36	17	74034664	74034664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	74034664	74034664	DNAH17	17	C	C	G	30
USP36	57602	broad.mit.edu	36	17	74311298	74311298	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	74311298	74311298	USP36	17	G	G	A	38
PCYT2	5833	broad.mit.edu	36	17	77457663	77457664	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	DNP	77457663	77457664	PCYT2	17	GG	GG	TT	43
FN3KRP	79672	broad.mit.edu	36	17	78270216	78270216	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	78270216	78270216	FN3KRP	17	T	T	A	55
CPLX4	339302	broad.mit.edu	36	18	55130981	55130981	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	55130981	55130981	CPLX4	18	C	C	A	21
SALL3	27164	broad.mit.edu	36	18	74854204	74854204	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	74854204	74854204	SALL3	18	C	C	A	26
MAST1	22983	broad.mit.edu	36	19	12810413	12810413	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	12810413	12810413	MAST1	19	T	T	C	64
CPAMD8	27151	broad.mit.edu	36	19	16969035	16969035	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	16969035	16969035	CPAMD8	19	C	C	A	30
KIAA1683	80726	broad.mit.edu	36	19	18238290	18238290	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	18238290	18238290	KIAA1683	19	A	A	G	16
KLK7	5650	broad.mit.edu	36	19	56172756	56172756	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	56172756	56172756	KLK7	19	C	C	T	29
PRKCG	5582	broad.mit.edu	36	19	59086787	59086787	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	59086787	59086787	PRKCG	19	G	G	A	45
ZNF581	51545	broad.mit.edu	36	19	60847886	60847886	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	60847886	60847886	ZNF581	19	C	C	A	32
SCN9A	6335	broad.mit.edu	36	2	166802907	166802907	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	166802907	166802907	SCN9A	2	A	A	G	8
CHRNA1	1134	broad.mit.edu	36	2	175326556	175326556	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	175326556	175326556	CHRNA1	2	G	G	A	36
PMS1	5378	broad.mit.edu	36	2	190436884	190436884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	190436884	190436884	PMS1	2	C	C	G	21
INO80D	54891	broad.mit.edu	36	2	206577423	206577423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	206577423	206577423	INO80D	2	T	T	C	49
INO80D	54891	broad.mit.edu	36	2	206635892	206635892	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	206635892	206635892	INO80D	2	C	C	T	23
TRIP12	9320	broad.mit.edu	36	2	230391454	230391454	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	230391454	230391454	TRIP12	2	A	A	T	15
TRAF3IP1	26146	broad.mit.edu	36	2	238970910	238970910	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	238970910	238970910	TRAF3IP1	2	C	C	T	25
SNED1	25992	broad.mit.edu	36	2	241637192	241637192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	241637192	241637192	SNED1	2	T	T	C	55
MTERFD2	130916	broad.mit.edu	36	2	241684145	241684145	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	241684145	241684145	MTERFD2	2	C	C	G	29
CPXM1	56265	broad.mit.edu	36	20	2726886	2726886	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Nonsense_Mutation	SNP	2726886	2726886	CPXM1	20	G	G	A	46
TSHZ2	128553	broad.mit.edu	36	20	51305913	51305913	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	51305913	51305913	TSHZ2	20	A	A	G	2
TAF4	6874	broad.mit.edu	36	20	60006625	60006625	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	60006625	60006625	TAF4	20	C	C	T	32
TRPM2	7226	broad.mit.edu	36	21	44683403	44683403	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	44683403	44683403	TRPM2	21	T	T	C	53
MKL1	57591	broad.mit.edu	36	22	39144836	39144836	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	39144836	39144836	MKL1	22	G	G	C	34
MOBP	4336	broad.mit.edu	36	3	39518705	39518705	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	39518705	39518705	MOBP	3	T	T	G	57
COL6A6	131873	broad.mit.edu	36	3	131764789	131764789	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	131764789	131764789	COL6A6	3	C	C	A	29
EPHB3	2049	broad.mit.edu	36	3	185780928	185780928	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	185780928	185780928	EPHB3	3	G	G	C	46
LMLN	89782	broad.mit.edu	36	3	199171527	199171527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	199171527	199171527	LMLN	3	G	G	T	47
ELMOD2	255520	broad.mit.edu	36	4	141666057	141666057	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	141666057	141666057	ELMOD2	4	T	T	A	56
RXFP3	51289	broad.mit.edu	36	5	33973156	33973156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	33973156	33973156	RXFP3	5	C	C	T	26
ZNF608	57507	broad.mit.edu	36	5	124107949	124107949	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	124107949	124107949	ZNF608	5	C	C	T	30
FAM65B	9750	broad.mit.edu	36	6	24977332	24977332	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	24977332	24977332	FAM65B	6	T	T	A	57
MAS1L	116511	broad.mit.edu	36	6	29562653	29562653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	29562653	29562653	MAS1L	6	C	C	T	26
GNL1	2794	broad.mit.edu	36	6	30621999	30621999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	30621999	30621999	GNL1	6	G	G	A	40
KLHL31	401265	broad.mit.edu	36	6	53626958	53626958	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Nonsense_Mutation	SNP	53626958	53626958	KLHL31	6	G	G	A	45
ABCB5	340273	broad.mit.edu	36	7	20651928	20651928	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	20651928	20651928	ABCB5	7	G	G	A	41
PIK3CG	5294	broad.mit.edu	36	7	106300612	106300612	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	106300612	106300612	PIK3CG	7	T	T	A	60
C7orf60	154743	broad.mit.edu	36	7	112249203	112249203	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Silent	SNP	112249203	112249203	C7orf60	7	C	C	T	24
ARF5	381	broad.mit.edu	36	7	127017389	127017389	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Nonsense_Mutation	SNP	127017389	127017389	ARF5	7	G	G	T	41
OPN1SW	611	broad.mit.edu	36	7	128203015	128203015	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	128203015	128203015	OPN1SW	7	A	A	C	8
SLC18A1	6570	broad.mit.edu	36	8	20082740	20082740	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	20082740	20082740	SLC18A1	8	G	G	C	33
TMEM70	54968	broad.mit.edu	36	8	75056274	75056274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	75056274	75056274	TMEM70	8	C	C	T	17
COL22A1	169044	broad.mit.edu	36	8	139675519	139675519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	139675519	139675519	COL22A1	8	C	C	T	23
AK3	50808	broad.mit.edu	36	9	4712564	4712564	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	4712564	4712564	AK3	9	C	C	G	29
FOXD4L3	286380	broad.mit.edu	36	9	70108671	70108671	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	70108671	70108671	FOXD4L3	9	A	A	T	11
PRUNE2	158471	broad.mit.edu	36	9	78514606	78514606	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-24-2298-01	Broad	Missense_Mutation	SNP	78514606	78514606	PRUNE2	9	C	C	A	25
MYOM3	127294	broad.mit.edu	36	1	24307664	24307665	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-24-2298-01	TCGA-24-2298-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-24-2298-01	Broad	Frame_Shift_Ins	INS	24307664	24307665	MYOM3	1	-	G	-	55
