Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TMEM69	51249	broad.mit.edu	36	1	45932007	45932007	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	45932007	45932007	TMEM69	1	C	C	T	25
NEXN	91624	broad.mit.edu	36	1	78156487	78156487	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Nonsense_Mutation	SNP	78156487	78156487	NEXN	1	G	G	T	45
RBMXL1	494115	broad.mit.edu	36	1	89221358	89221358	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	89221358	89221358	RBMXL1	1	C	C	G	18
LYST	1130	broad.mit.edu	36	1	234060259	234060259	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	234060259	234060259	LYST	1	C	C	T	30
ARHGAP21	57584	broad.mit.edu	36	10	24914375	24914375	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	24914375	24914375	ARHGAP21	10	C	C	T	30
PTCHD3	374308	broad.mit.edu	36	10	27742234	27742234	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	27742234	27742234	PTCHD3	10	G	G	A	38
FAM196A	642938	broad.mit.edu	36	10	128864373	128864373	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	128864373	128864373	FAM196A	10	G	G	A	40
CORO1B	57175	broad.mit.edu	36	11	66966579	66966579	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	66966579	66966579	CORO1B	11	G	G	A	39
ARID2	196528	broad.mit.edu	36	12	44516673	44516673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	44516673	44516673	ARID2	12	G	G	A	40
KRT4	3851	broad.mit.edu	36	12	51494186	51494186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	G	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	51494186	51494186	KRT4	12	C	C	G	31
STAT6	6778	broad.mit.edu	36	12	55787774	55787774	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	55787774	55787774	STAT6	12	C	C	T	31
TPCN1	53373	broad.mit.edu	36	12	112191059	112191059	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	112191059	112191059	TPCN1	12	C	C	T	27
L2HGDH	79944	broad.mit.edu	36	14	49805729	49805729	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	49805729	49805729	L2HGDH	14	T	T	C	54
PCNX	22990	broad.mit.edu	36	14	70562597	70562597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	70562597	70562597	PCNX	14	G	G	A	40
TDRD9	122402	broad.mit.edu	36	14	103527287	103527287	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Nonsense_Mutation	SNP	103527287	103527287	TDRD9	14	C	C	T	27
TRPM7	54822	broad.mit.edu	36	15	48689099	48689099	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	A	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	48689099	48689099	TRPM7	15	C	C	A	25
KIAA0556	23247	broad.mit.edu	36	16	27627607	27627607	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Silent	SNP	27627607	27627607	KIAA0556	16	G	G	A	40
SRSF1	6426	broad.mit.edu	36	17	53439347	53439347	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	53439347	53439347	SRSF1	17	G	G	A	39
RYR1	6261	broad.mit.edu	36	19	43710877	43710877	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	43710877	43710877	RYR1	19	C	C	T	19
HTRA2	27429	broad.mit.edu	36	2	74611552	74611552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	74611552	74611552	HTRA2	2	C	C	T	32
KCNH7	90134	broad.mit.edu	36	2	163010919	163010919	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	163010919	163010919	KCNH7	2	A	A	C	9
SCN9A	6335	broad.mit.edu	36	2	166793592	166793592	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	166793592	166793592	SCN9A	2	G	G	T	48
RAPH1	65059	broad.mit.edu	36	2	204013183	204013183	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	204013183	204013183	RAPH1	2	G	G	A	43
TTLL4	9654	broad.mit.edu	36	2	219311967	219311967	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	219311967	219311967	TTLL4	2	G	G	T	45
CAPN10	11132	broad.mit.edu	36	2	241183346	241183346	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	241183346	241183346	CAPN10	2	G	G	A	37
TMC2	117532	broad.mit.edu	36	20	2553002	2553002	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	2553002	2553002	TMC2	20	G	G	A	38
OSBPL2	9885	broad.mit.edu	36	20	60280615	60280615	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	60280615	60280615	OSBPL2	20	C	C	T	26
ADRBK2	157	broad.mit.edu	36	22	24430154	24430154	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	24430154	24430154	ADRBK2	22	C	C	T	27
SETD5	55209	broad.mit.edu	36	3	9445678	9445678	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	9445678	9445678	SETD5	3	T	T	C	51
SNRK	54861	broad.mit.edu	36	3	43363914	43363914	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	T	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	43363914	43363914	SNRK	3	G	G	T	48
TIPARP	25976	broad.mit.edu	36	3	157904093	157904093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	157904093	157904093	TIPARP	3	C	C	T	17
YTHDC1	91746	broad.mit.edu	36	4	68867041	68867041	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Nonsense_Mutation	SNP	68867041	68867041	YTHDC1	4	G	G	A	40
PCDH10	57575	broad.mit.edu	36	4	134292958	134292958	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	134292958	134292958	PCDH10	4	T	T	G	59
ACSL1	2180	broad.mit.edu	36	4	185926492	185926492	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	A	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	185926492	185926492	ACSL1	4	G	G	A	47
PRDM9	56979	broad.mit.edu	36	5	23563434	23563434	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	G	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	23563434	23563434	PRDM9	5	C	C	G	17
DEPDC1B	55789	broad.mit.edu	36	5	60018679	60018679	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	60018679	60018679	DEPDC1B	5	G	G	T	45
ADAMTS19	171019	broad.mit.edu	36	5	129047834	129047834	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	129047834	129047834	ADAMTS19	5	C	C	T	28
PCDHGB6	56100	broad.mit.edu	36	5	140769188	140769188	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	140769188	140769188	PCDHGB6	5	G	G	A	37
CCDC99	54908	broad.mit.edu	36	5	168958138	168958138	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	168958138	168958138	CCDC99	5	T	T	G	62
HK3	3101	broad.mit.edu	36	5	176249112	176249112	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	176249112	176249112	HK3	5	C	C	T	32
TRERF1	55809	broad.mit.edu	36	6	42339057	42339057	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	42339057	42339057	TRERF1	6	C	C	T	23
KIAA0240	23506	broad.mit.edu	36	6	42927907	42927907	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	42927907	42927907	KIAA0240	6	C	C	T	20
SDK1	221935	broad.mit.edu	36	7	4017140	4017140	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	4017140	4017140	SDK1	7	G	G	T	46
INHBA	3624	broad.mit.edu	36	7	41695796	41695796	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	41695796	41695796	INHBA	7	C	C	T	19
CALCR	799	broad.mit.edu	36	7	92946683	92946683	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	92946683	92946683	CALCR	7	C	C	T	19
RELN	5649	broad.mit.edu	36	7	102966978	102966978	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			C	T	C	C	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Silent	SNP	102966978	102966978	RELN	7	C	C	T	23
OR2A12	346525	broad.mit.edu	36	7	143423164	143423164	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	143423164	143423164	OR2A12	7	G	G	T	36
ZFHX4	79776	broad.mit.edu	36	8	77929104	77929104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Silent	SNP	77929104	77929104	ZFHX4	8	G	G	A	39
CDH17	1015	broad.mit.edu	36	8	95255614	95255614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	95255614	95255614	CDH17	8	G	G	T	41
MRPL13	28998	broad.mit.edu	36	8	121501290	121501291	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	DNP	121501290	121501291	MRPL13	8	GC	GC	AA	46
NDUFB9	4715	broad.mit.edu	36	8	125620702	125620702	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	125620702	125620702	NDUFB9	8	G	G	T	40
MAGEB4	4115	broad.mit.edu	36	X	30170960	30170960	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	30170960	30170960	MAGEB4	23	A	A	C	7
SPIN4	139886	broad.mit.edu	36	X	62487129	62487129	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Nonsense_Mutation	SNP	62487129	62487129	SPIN4	23	C	C	A	32
ARMCX1	51309	broad.mit.edu	36	X	100694882	100694882	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			G	C	G	G	Unknown	Valid	Somatic	x	x	454_PCR_WGA			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	100694882	100694882	ARMCX1	23	G	G	C	33
PLXNA3	55558	broad.mit.edu	36	X	153352653	153352653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	153352653	153352653	PLXNA3	23	G	G	A	38
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01			T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina GAIIx	TCGA-25-1319-01	Broad	Missense_Mutation	SNP	7518915	7518915	TP53	17	T	T	C	49
AQP12B	653437	broad.mit.edu	36	2	241270473	241270473	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-1319-01	Broad	Frame_Shift_Del	DEL	241270473	241270473	AQP12B	2	C	-	C	28
SLURP1	57152	broad.mit.edu	36	8	143819598	143819600	+	In_Frame_Del	DEL	AGA	-	AGA	novel	Unknown	TCGA-25-1319-01	TCGA-25-1319-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-25-1319-01	Broad	In_Frame_Del	DEL	143819598	143819600	SLURP1	8	AGA	-	AGA	7
