Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PLEKHM2	23207	broad.mit.edu	36	1	15927387	15927388	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	DNP	15927387	15927388	PLEKHM2	1	GC	GC	TG	46
AKR7L	246181	broad.mit.edu	36	1	19467716	19467716	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	19467716	19467716	AKR7L	1	G	G	A	38
THRAP3	9967	broad.mit.edu	36	1	36527639	36527639	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	36527639	36527639	THRAP3	1	C	C	A	18
KCNA10	3744	broad.mit.edu	36	1	110862799	110862799	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	110862799	110862799	KCNA10	1	G	G	A	41
GON4L	54856	broad.mit.edu	36	1	153993394	153993394	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	153993394	153993394	GON4L	1	G	G	A	37
FMN2	56776	broad.mit.edu	36	1	238418141	238418141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	238418141	238418141	FMN2	1	G	G	C	46
ATM	472	broad.mit.edu	36	11	107620790	107620790	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	107620790	107620790	ATM	11	T	T	C	63
ATM	472	broad.mit.edu	36	11	107705108	107705108	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Nonsense_Mutation	SNP	107705108	107705108	ATM	11	C	C	T	25
CD163L1	283316	broad.mit.edu	36	12	7476563	7476563	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	7476563	7476563	CD163L1	12	T	T	C	60
ABCC9	10060	broad.mit.edu	36	12	21851660	21851660	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	21851660	21851660	ABCC9	12	C	C	A	21
FAM113B	91523	broad.mit.edu	36	12	45916217	45916217	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	45916217	45916217	FAM113B	12	C	C	T	31
KRT4	3851	broad.mit.edu	36	12	51493696	51493696	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	51493696	51493696	KRT4	12	G	G	A	38
KRT8	3856	broad.mit.edu	36	12	51579919	51579919	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	51579919	51579919	KRT8	12	G	G	A	40
IQCD	115811	broad.mit.edu	36	12	112129788	112129788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	112129788	112129788	IQCD	12	C	C	T	28
RNF6	6049	broad.mit.edu	36	13	25687649	25687649	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	25687649	25687649	RNF6	13	T	T	C	60
OR11G2	390439	broad.mit.edu	36	14	19735809	19735809	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	19735809	19735809	OR11G2	14	G	G	C	45
PRKD1	5587	broad.mit.edu	36	14	29177679	29177679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	29177679	29177679	PRKD1	14	C	C	G	26
SERPINA3	12	broad.mit.edu	36	14	94159877	94159877	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	94159877	94159877	SERPINA3	14	C	C	G	25
DUOX2	50506	broad.mit.edu	36	15	43175366	43175366	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	43175366	43175366	DUOX2	15	C	C	A	22
ZKSCAN2	342357	broad.mit.edu	36	16	25165606	25165606	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	25165606	25165606	ZKSCAN2	16	T	T	A	50
PHKB	5257	broad.mit.edu	36	16	46180502	46180502	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	46180502	46180502	PHKB	16	A	A	G	7
CDH3	1001	broad.mit.edu	36	16	67283312	67283312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	67283312	67283312	CDH3	16	G	G	A	42
KIAA1609	57707	broad.mit.edu	36	16	83077936	83077936	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	83077936	83077936	KIAA1609	16	T	T	C	51
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	27
NCOR1	9611	broad.mit.edu	36	17	15936019	15936019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	15936019	15936019	NCOR1	17	T	T	C	52
CACNA1A	773	broad.mit.edu	36	19	13202003	13202003	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	13202003	13202003	CACNA1A	19	G	G	A	39
RYR1	6261	broad.mit.edu	36	19	43672619	43672619	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	43672619	43672619	RYR1	19	G	G	T	34
FCGBP	8857	broad.mit.edu	36	19	45058257	45058257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	45058257	45058257	FCGBP	19	G	G	A	38
DEDD2	162989	broad.mit.edu	36	19	47405794	47405794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	47405794	47405794	DEDD2	19	G	G	A	39
PSG7	5676	broad.mit.edu	36	19	48125533	48125533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	48125533	48125533	PSG7	19	G	G	T	35
KIR3DL1	3811	broad.mit.edu	36	19	60023210	60023210	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	60023210	60023210	KIR3DL1	19	T	T	G	53
PXDN	7837	broad.mit.edu	36	2	1649200	1649200	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	1649200	1649200	PXDN	2	C	C	G	30
C2orf42	54980	broad.mit.edu	36	2	70262055	70262055	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	70262055	70262055	C2orf42	2	C	C	G	21
TTN	7273	broad.mit.edu	36	2	179150626	179150626	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	179150626	179150626	TTN	2	T	T	C	49
GIGYF2	26058	broad.mit.edu	36	2	233364332	233364332	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	233364332	233364332	GIGYF2	2	C	C	T	19
ZBP1	81030	broad.mit.edu	36	20	55621672	55621672	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	55621672	55621672	ZBP1	20	A	A	G	4
OPRL1	4987	broad.mit.edu	36	20	62200170	62200170	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	62200170	62200170	OPRL1	20	C	C	T	31
CACNA1D	776	broad.mit.edu	36	3	53728820	53728820	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Splice_Site_SNP	SNP	53728820	53728820	CACNA1D	3	A	A	G	7
ARGFX	503582	broad.mit.edu	36	3	122788025	122788025	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	122788025	122788025	ARGFX	3	C	C	G	32
LRRC31	79782	broad.mit.edu	36	3	171061052	171061052	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	171061052	171061052	LRRC31	3	G	G	C	45
KIAA1211	57482	broad.mit.edu	36	4	56876077	56876077	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	56876077	56876077	KIAA1211	4	C	C	G	22
PDZD2	23037	broad.mit.edu	36	5	32128781	32128781	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	32128781	32128781	PDZD2	5	T	T	G	56
ABLIM3	22885	broad.mit.edu	36	5	148576783	148576783	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Silent	SNP	148576783	148576783	ABLIM3	5	A	A	T	11
LAMA2	3908	broad.mit.edu	36	6	129246100	129246100	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	129246100	129246100	LAMA2	6	G	G	T	43
IGF2R	3482	broad.mit.edu	36	6	160430178	160430178	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	160430178	160430178	IGF2R	6	G	G	A	46
ELN	2006	broad.mit.edu	36	7	73107035	73107035	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	73107035	73107035	ELN	7	G	G	A	39
MUC17	140453	broad.mit.edu	36	7	100471957	100471957	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Nonsense_Mutation	SNP	100471957	100471957	MUC17	7	G	G	T	45
MPDZ	8777	broad.mit.edu	36	9	13196068	13196068	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	13196068	13196068	MPDZ	9	T	T	C	61
LOC340602	0	broad.mit.edu	36	X	51167567	51167567	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01	TCGA-25-2399-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2399-01	Broad	Missense_Mutation	SNP	51167567	51167567	LOC340602	23	G	G	A	42
