Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RAP1GAP	5909	broad.mit.edu	36	1	21809219	21809219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	21809219	21809219	RAP1GAP	1	G	G	A	35
OR14C36	127066	broad.mit.edu	36	1	246579363	246579363	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	246579363	246579363	OR14C36	1	A	A	C	10
NDST2	8509	broad.mit.edu	36	10	75236222	75236222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	75236222	75236222	NDST2	10	G	G	A	40
FAM45A	404636	broad.mit.edu	36	10	120882025	120882025	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	120882025	120882025	FAM45A	10	G	G	A	42
ERC1	23085	broad.mit.edu	36	12	1351370	1351370	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	1351370	1351370	ERC1	12	A	A	G	11
PLEKHG6	55200	broad.mit.edu	36	12	6295019	6295019	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Silent	SNP	6295019	6295019	PLEKHG6	12	G	G	A	48
CDKN1B	1027	broad.mit.edu	36	12	12762272	12762272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	12762272	12762272	CDKN1B	12	G	G	A	33
C13orf26	122046	broad.mit.edu	36	13	30438436	30438436	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Nonsense_Mutation	SNP	30438436	30438436	C13orf26	13	C	C	T	23
UACA	55075	broad.mit.edu	36	15	68747021	68747021	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	68747021	68747021	UACA	15	C	C	G	20
EFCAB5	374786	broad.mit.edu	36	17	25441694	25441694	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Silent	SNP	25441694	25441694	EFCAB5	17	C	C	A	26
KCNH6	81033	broad.mit.edu	36	17	58976853	58976853	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	58976853	58976853	KCNH6	17	C	C	T	24
ABCA9	10350	broad.mit.edu	36	17	64539997	64539997	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	64539997	64539997	ABCA9	17	C	C	T	31
PRR19	284338	broad.mit.edu	36	19	47505840	47505840	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	47505840	47505840	PRR19	19	G	G	C	42
HES1	3280	broad.mit.edu	36	3	195338685	195338685	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	195338685	195338685	HES1	3	C	C	T	27
RICTOR	253260	broad.mit.edu	36	5	38988275	38988275	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Silent	SNP	38988275	38988275	RICTOR	5	T	T	C	49
PHF3	23469	broad.mit.edu	36	6	64474071	64474071	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Silent	SNP	64474071	64474071	PHF3	6	A	A	T	6
AIM1	202	broad.mit.edu	36	6	107074958	107074958	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2408-01	TCGA-25-2408-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-25-2408-01	Broad	Missense_Mutation	SNP	107074958	107074958	AIM1	6	C	C	G	22
