Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
EXTL1	2134	broad.mit.edu	36	1	26221812	26221812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	26221812	26221812	EXTL1	1	C	C	T	32
MRPS15	64960	broad.mit.edu	36	1	36694499	36694499	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	36694499	36694499	MRPS15	1	C	C	T	19
GBP6	163351	broad.mit.edu	36	1	89607795	89607795	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	89607795	89607795	GBP6	1	C	C	A	18
ABCA4	24	broad.mit.edu	36	1	94267639	94267639	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	94267639	94267639	ABCA4	1	T	T	A	59
LPPR4	9890	broad.mit.edu	36	1	99539933	99539933	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	99539933	99539933	LPPR4	1	T	T	A	61
AMIGO1	57463	broad.mit.edu	36	1	109852263	109852263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	109852263	109852263	AMIGO1	1	C	C	T	29
RBM15	64783	broad.mit.edu	36	1	110684843	110684843	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	110684843	110684843	RBM15	1	A	A	G	4
CTTNBP2NL	55917	broad.mit.edu	36	1	112798625	112798625	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	112798625	112798625	CTTNBP2NL	1	G	G	T	39
IGSF3	3321	broad.mit.edu	36	1	116923710	116923710	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	116923710	116923710	IGSF3	1	C	C	G	27
TCHH	7062	broad.mit.edu	36	1	150350676	150350676	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	150350676	150350676	TCHH	1	C	C	T	28
GON4L	54856	broad.mit.edu	36	1	154009625	154009625	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	154009625	154009625	GON4L	1	G	G	A	38
SELE	6401	broad.mit.edu	36	1	167968549	167968549	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	167968549	167968549	SELE	1	T	T	A	53
ZBTB41	360023	broad.mit.edu	36	1	195435724	195435724	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	195435724	195435724	ZBTB41	1	A	A	C	16
ATP2B4	493	broad.mit.edu	36	1	201975442	201975442	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	201975442	201975442	ATP2B4	1	A	A	T	11
PIGR	5284	broad.mit.edu	36	1	205173109	205173109	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	205173109	205173109	PIGR	1	C	C	A	24
C4BPA	722	broad.mit.edu	36	1	205383942	205383942	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	205383942	205383942	C4BPA	1	A	A	T	11
ARHGAP21	57584	broad.mit.edu	36	10	24951666	24951666	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Splice_Site_SNP	SNP	24951666	24951666	ARHGAP21	10	A	A	T	14
SHOC2	8036	broad.mit.edu	36	10	112714797	112714797	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	112714797	112714797	SHOC2	10	C	C	T	18
C11orf41	25758	broad.mit.edu	36	11	33546309	33546309	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	33546309	33546309	C11orf41	11	G	G	A	39
OR4C13	283092	broad.mit.edu	36	11	49930899	49930899	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	49930899	49930899	OR4C13	11	G	G	T	42
AHNAK	79026	broad.mit.edu	36	11	62041330	62041330	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	62041330	62041330	AHNAK	11	A	A	G	12
NAALADL1	10004	broad.mit.edu	36	11	64569328	64569328	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	64569328	64569328	NAALADL1	11	A	A	G	7
TBX10	347853	broad.mit.edu	36	11	67159191	67159191	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	67159191	67159191	TBX10	11	A	A	G	11
GDF3	9573	broad.mit.edu	36	12	7739588	7739588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	7739588	7739588	GDF3	12	G	G	T	34
PKP2	5318	broad.mit.edu	36	12	32922444	32922444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	32922444	32922444	PKP2	12	G	G	A	47
LRRK2	120892	broad.mit.edu	36	12	38982936	38982936	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	38982936	38982936	LRRK2	12	T	T	C	52
SHMT2	6472	broad.mit.edu	36	12	55913664	55913664	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	55913664	55913664	SHMT2	12	C	C	T	31
TMTC2	160335	broad.mit.edu	36	12	81883627	81883627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	81883627	81883627	TMTC2	12	G	G	T	34
SCYL2	55681	broad.mit.edu	36	12	99244535	99244535	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	99244535	99244535	SCYL2	12	G	G	A	40
SSH1	54434	broad.mit.edu	36	12	107729204	107729204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	107729204	107729204	SSH1	12	C	C	T	31
TBX3	6926	broad.mit.edu	36	12	113605310	113605310	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	113605310	113605310	TBX3	12	C	C	A	30
NBEA	26960	broad.mit.edu	36	13	34668278	34668278	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	34668278	34668278	NBEA	13	T	T	C	61
REC8	9985	broad.mit.edu	36	14	23716581	23716581	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	23716581	23716581	REC8	14	C	C	A	20
LRFN5	145581	broad.mit.edu	36	14	41430889	41430889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	41430889	41430889	LRFN5	14	C	C	T	19
DIO3	1735	broad.mit.edu	36	14	101098382	101098382	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	101098382	101098382	DIO3	14	A	A	G	11
RYR3	6263	broad.mit.edu	36	15	31775970	31775970	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	31775970	31775970	RYR3	15	G	G	T	45
EHD4	30844	broad.mit.edu	36	15	39980247	39980247	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	39980247	39980247	EHD4	15	G	G	A	38
FBN1	2200	broad.mit.edu	36	15	46536234	46536234	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	46536234	46536234	FBN1	15	C	C	T	30
RASL12	51285	broad.mit.edu	36	15	63138788	63138789	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	DNP	63138788	63138789	RASL12	15	TC	TC	AA	54
CORO2B	10391	broad.mit.edu	36	15	66798128	66798128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	66798128	66798128	CORO2B	15	C	C	G	27
POLG	5428	broad.mit.edu	36	15	87666204	87666204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	87666204	87666204	POLG	15	C	C	T	17
SYNM	23336	broad.mit.edu	36	15	97471387	97471387	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	97471387	97471387	SYNM	15	C	C	T	20
MSLNL	401827	broad.mit.edu	36	16	762928	762928	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	762928	762928	MSLNL	16	A	A	T	7
POLR3E	55718	broad.mit.edu	36	16	22235495	22235495	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	22235495	22235495	POLR3E	16	G	G	C	40
PRDM7	11105	broad.mit.edu	36	16	88655922	88655922	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	88655922	88655922	PRDM7	16	C	C	A	26
PER1	5187	broad.mit.edu	36	17	7990083	7990083	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	7990083	7990083	PER1	17	C	C	A	23
MYO15A	51168	broad.mit.edu	36	17	17990024	17990024	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	17990024	17990024	MYO15A	17	A	A	T	6
MYO15A	51168	broad.mit.edu	36	17	18004036	18004036	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	18004036	18004036	MYO15A	17	A	A	C	7
RHBDL3	162494	broad.mit.edu	36	17	27656501	27656501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	27656501	27656501	RHBDL3	17	G	G	A	45
SLFN13	146857	broad.mit.edu	36	17	30795017	30795017	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Nonsense_Mutation	SNP	30795017	30795017	SLFN13	17	G	G	A	45
CARD14	79092	broad.mit.edu	36	17	75786892	75786892	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	75786892	75786892	CARD14	17	C	C	T	31
ONECUT2	9480	broad.mit.edu	36	18	53294750	53294750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	53294750	53294750	ONECUT2	18	C	C	T	19
SERPINB4	6318	broad.mit.edu	36	18	59461637	59461637	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	59461637	59461637	SERPINB4	18	T	T	G	63
MUC16	94025	broad.mit.edu	36	19	8938660	8938660	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	8938660	8938660	MUC16	19	C	C	A	25
ZNF208	7757	broad.mit.edu	36	19	21946280	21946280	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	21946280	21946280	ZNF208	19	C	C	A	24
PEPD	5184	broad.mit.edu	36	19	38672798	38672798	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	38672798	38672798	PEPD	19	G	G	A	38
ZNF527	84503	broad.mit.edu	36	19	42571651	42571651	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	42571651	42571651	ZNF527	19	C	C	T	29
SLC8A2	6543	broad.mit.edu	36	19	52627435	52627435	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	52627435	52627435	SLC8A2	19	C	C	T	23
ZNF584	201514	broad.mit.edu	36	19	63618803	63618803	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	63618803	63618803	ZNF584	19	A	A	C	3
CLEC4F	165530	broad.mit.edu	36	2	70896853	70896853	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	70896853	70896853	CLEC4F	2	T	T	C	50
POLR1A	25885	broad.mit.edu	36	2	86111964	86111964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	86111964	86111964	POLR1A	2	C	C	T	24
IL1F8	27177	broad.mit.edu	36	2	113500251	113500251	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	113500251	113500251	IL1F8	2	C	C	T	24
SCN1A	6323	broad.mit.edu	36	2	166556278	166556278	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	166556278	166556278	SCN1A	2	G	G	C	33
XIRP2	129446	broad.mit.edu	36	2	167813873	167813873	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	167813873	167813873	XIRP2	2	C	C	A	26
DLX2	1746	broad.mit.edu	36	2	172675253	172675253	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	172675253	172675253	DLX2	2	A	A	T	8
TTN	7273	broad.mit.edu	36	2	179162150	179162150	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	179162150	179162150	TTN	2	C	C	T	26
CCDC141	285025	broad.mit.edu	36	2	179410667	179410667	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	179410667	179410667	CCDC141	2	T	T	G	54
SLC4A3	6508	broad.mit.edu	36	2	220205295	220205295	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	220205295	220205295	SLC4A3	2	G	G	A	38
ACSL3	2181	broad.mit.edu	36	2	223507617	223507617	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	223507617	223507617	ACSL3	2	T	T	C	57
UGT1A4	54657	broad.mit.edu	36	2	234292325	234292325	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	234292325	234292325	UGT1A4	2	C	C	G	24
ARL4C	10123	broad.mit.edu	36	2	235069407	235069407	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	235069407	235069407	ARL4C	2	T	T	G	55
RBM39	9584	broad.mit.edu	36	20	33773163	33773163	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	33773163	33773163	RBM39	20	A	A	G	6
KIAA1755	85449	broad.mit.edu	36	20	36303401	36303401	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	36303401	36303401	KIAA1755	20	G	G	A	47
TOX2	84969	broad.mit.edu	36	20	42008055	42008055	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	42008055	42008055	TOX2	20	C	C	A	25
ZFP64	55734	broad.mit.edu	36	20	50203113	50203113	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	50203113	50203113	ZFP64	20	G	G	T	35
TSHZ2	128553	broad.mit.edu	36	20	51306065	51306065	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	51306065	51306065	TSHZ2	20	G	G	T	36
COL20A1	57642	broad.mit.edu	36	20	61399771	61399771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	61399771	61399771	COL20A1	20	G	G	A	39
COL18A1	80781	broad.mit.edu	36	21	45713004	45713004	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	45713004	45713004	COL18A1	21	T	T	C	54
SLC4A7	9497	broad.mit.edu	36	3	27414817	27414817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	27414817	27414817	SLC4A7	3	C	C	G	22
ZNF589	51385	broad.mit.edu	36	3	48285204	48285204	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	48285204	48285204	ZNF589	3	G	G	T	42
PDZRN3	23024	broad.mit.edu	36	3	73515603	73515603	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	73515603	73515603	PDZRN3	3	T	T	C	56
RYK	6259	broad.mit.edu	36	3	135390446	135390446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	135390446	135390446	RYK	3	G	G	A	38
CHST2	9435	broad.mit.edu	36	3	144323925	144323925	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	144323925	144323925	CHST2	3	G	G	T	39
ATP11B	23200	broad.mit.edu	36	3	184085261	184085261	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	184085261	184085261	ATP11B	3	G	G	T	42
HTR3C	170572	broad.mit.edu	36	3	185256761	185256761	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	185256761	185256761	HTR3C	3	G	G	A	40
BCL6	604	broad.mit.edu	36	3	188930009	188930009	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	188930009	188930009	BCL6	3	T	T	A	57
FRAS1	80144	broad.mit.edu	36	4	79606527	79606527	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	79606527	79606527	FRAS1	4	G	G	A	39
MTTP	4547	broad.mit.edu	36	4	100746944	100746944	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	100746944	100746944	MTTP	4	A	A	G	3
WDR17	116966	broad.mit.edu	36	4	177326792	177326792	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Splice_Site_SNP	SNP	177326792	177326792	WDR17	4	G	G	T	36
KIAA0947	23379	broad.mit.edu	36	5	5517525	5517525	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	5517525	5517525	KIAA0947	5	C	C	G	24
SLC45A2	51151	broad.mit.edu	36	5	33990231	33990231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	33990231	33990231	SLC45A2	5	T	T	A	51
VCAN	1462	broad.mit.edu	36	5	82872631	82872631	+	Missense_Mutation	SNP	G	G	A	rs59948995	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	82872631	82872631	VCAN	5	G	G	A	40
PPARGC1B	133522	broad.mit.edu	36	5	149186536	149186536	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	149186536	149186536	PPARGC1B	5	C	C	T	19
CYFIP2	26999	broad.mit.edu	36	5	156674022	156674022	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	156674022	156674022	CYFIP2	5	C	C	T	21
IMPG1	3617	broad.mit.edu	36	6	76785218	76785218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	76785218	76785218	IMPG1	6	C	C	T	24
ZBTB24	9841	broad.mit.edu	36	6	109903334	109903334	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	109903334	109903334	ZBTB24	6	C	C	A	30
LAMA2	3908	broad.mit.edu	36	6	129683414	129683414	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	129683414	129683414	LAMA2	6	G	G	T	40
SGK1	6446	broad.mit.edu	36	6	134533197	134533197	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	134533197	134533197	SGK1	6	T	T	C	63
INMT	11185	broad.mit.edu	36	7	30761858	30761858	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Nonsense_Mutation	SNP	30761858	30761858	INMT	7	G	G	T	41
AKAP9	10142	broad.mit.edu	36	7	91550881	91550881	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	91550881	91550881	AKAP9	7	G	G	A	45
CBLL1	79872	broad.mit.edu	36	7	107186218	107186218	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Nonsense_Mutation	SNP	107186218	107186218	CBLL1	7	C	C	T	29
PLXNA4	91584	broad.mit.edu	36	7	131476006	131476006	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	131476006	131476006	PLXNA4	7	G	G	A	44
DENND2A	27147	broad.mit.edu	36	7	139915941	139915941	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Nonsense_Mutation	SNP	139915941	139915941	DENND2A	7	G	G	A	47
ZFHX4	79776	broad.mit.edu	36	8	77781037	77781037	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Nonsense_Mutation	SNP	77781037	77781037	ZFHX4	8	C	C	A	31
NUDCD1	84955	broad.mit.edu	36	8	110362554	110362554	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	110362554	110362554	NUDCD1	8	T	T	A	58
CYP11B1	1584	broad.mit.edu	36	8	143957520	143957520	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	143957520	143957520	CYP11B1	8	G	G	T	47
PARP10	84875	broad.mit.edu	36	8	145132235	145132235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	145132235	145132235	PARP10	8	C	C	T	19
IFNA13	3447	broad.mit.edu	36	9	21357973	21357973	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	21357973	21357973	IFNA13	9	C	C	A	18
RGP1	9827	broad.mit.edu	36	9	35741705	35741705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	35741705	35741705	RGP1	9	T	T	C	59
FRMPD1	22844	broad.mit.edu	36	9	37723549	37723549	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	37723549	37723549	FRMPD1	9	A	A	G	15
CEP78	84131	broad.mit.edu	36	9	80071219	80071219	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	80071219	80071219	CEP78	9	C	C	T	31
C9orf89	84270	broad.mit.edu	36	9	94912803	94912803	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	94912803	94912803	C9orf89	9	C	C	G	24
SPTAN1	6709	broad.mit.edu	36	9	130368968	130368968	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	130368968	130368968	SPTAN1	9	C	C	T	30
ADAMTS13	11093	broad.mit.edu	36	9	135293271	135293271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	135293271	135293271	ADAMTS13	9	C	C	T	22
NOTCH1	4851	broad.mit.edu	36	9	138511033	138511033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	138511033	138511033	NOTCH1	9	G	G	A	38
UBA1	7317	broad.mit.edu	36	X	46950616	46950616	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Silent	SNP	46950616	46950616	UBA1	23	C	C	G	32
ARMCX3	51566	broad.mit.edu	36	X	100766912	100766912	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	100766912	100766912	ARMCX3	23	C	C	G	26
PHF6	84295	broad.mit.edu	36	X	133376711	133376711	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Splice_Site_SNP	SNP	133376711	133376711	PHF6	23	G	G	C	36
TKTL1	8277	broad.mit.edu	36	X	153177534	153177534	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	x	x	---			x	TCGA-61-2012-01	Broad	Missense_Mutation	SNP	153177534	153177534	TKTL1	23	G	G	A	34
MYO7A	4647	broad.mit.edu	36	11	76573419	76573440	+	Nonstop_Mutation	DEL	GGAGGCGGGGACACCAGGGCCT	-	GGAGGCGGGGACACCAGGGCCT	novel	Unknown	TCGA-61-2012-01	TCGA-61-2012-01							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	TCGA-61-2012-01	Broad	Nonstop_Mutation	DEL	76573419	76573440	MYO7A	11	GGAGGCGGGGACACCAGGGCCT	-	GGAGGCGGGGACACCAGGGCCT	43
