Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM9	8754	hgsc.bcm.edu	37	8	38869228	38869228	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRD4	23476	hgsc.bcm.edu	37	19	15360094	15360095	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf80	389073	hgsc.bcm.edu	37	2	209051692	209051692	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC18	343099	hgsc.bcm.edu	37	1	93672797	93672798	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD6	84181	hgsc.bcm.edu	37	20	40081483	40081483	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHSY1	22856	hgsc.bcm.edu	37	15	101717750	101717750	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL4A5	1287	hgsc.bcm.edu	37	X	107930860	107930860	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRHR2	1395	hgsc.bcm.edu	37	7	30706864	30706864	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYP4F11	57834	hgsc.bcm.edu	37	19	16035643	16035643	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX32	55760	hgsc.bcm.edu	37	10	127548370	127548370	+	Silent	SNP	G	G	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUOX2	50506	hgsc.bcm.edu	37	15	45388135	45388135	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF2C1	26523	hgsc.bcm.edu	37	1	36372708	36372708	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF2S3	1968	hgsc.bcm.edu	37	X	24086218	24086218	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF4ENIF1	56478	hgsc.bcm.edu	37	22	31851207	31851207	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ELP2	55250	hgsc.bcm.edu	37	18	33709981	33709981	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EP300	2033	hgsc.bcm.edu	37	22	41536219	41536219	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLII	2314	hgsc.bcm.edu	37	17	18156764	18156764	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GBP5	115362	hgsc.bcm.edu	37	1	89732723	89732723	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GIPC2	54810	hgsc.bcm.edu	37	1	78601425	78601425	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GLP2R	9340	hgsc.bcm.edu	37	17	9745863	9745863	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR37	2861	hgsc.bcm.edu	37	7	124404891	124404891	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GSTCD	79807	hgsc.bcm.edu	37	4	106766678	106766678	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HADHB	3032	hgsc.bcm.edu	37	2	26505782	26505782	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HINFP	25988	hgsc.bcm.edu	37	11	119005189	119005189	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITIH1	3697	hgsc.bcm.edu	37	3	52825566	52825566	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1549	57670	hgsc.bcm.edu	37	7	138595936	138595936	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLHDC5	57542	hgsc.bcm.edu	37	12	27950786	27950786	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRMP	4033	hgsc.bcm.edu	37	12	25232386	25232386	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAN2B2	23324	hgsc.bcm.edu	37	4	6588812	6588812	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MECR	51102	hgsc.bcm.edu	37	1	29528533	29528533	+	Missense_Mutation	SNP	G	G	C	rs118132871	unknown	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MKKS	8195	hgsc.bcm.edu	37	20	10393758	10393758	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9074828	9074828	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9091029	9091029	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCAPH	23397	hgsc.bcm.edu	37	2	97020027	97020027	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRG1	3084	hgsc.bcm.edu	37	8	32600253	32600253	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PADI2	11240	hgsc.bcm.edu	37	1	17396596	17396596	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHB7	56129	hgsc.bcm.edu	37	5	140553822	140553822	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDCD11	22984	hgsc.bcm.edu	37	10	105164925	105164925	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4C	5143	hgsc.bcm.edu	37	19	18329004	18329004	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDE4DIP	9659	hgsc.bcm.edu	37	1	144906486	144906486	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POGK	57645	hgsc.bcm.edu	37	1	166818812	166818812	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POP7	10248	hgsc.bcm.edu	37	7	100304816	100304816	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RHAG	6005	hgsc.bcm.edu	37	6	49587014	49587014	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SARS	6301	hgsc.bcm.edu	37	1	109773533	109773533	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEZ6L2	26470	hgsc.bcm.edu	37	16	29884668	29884668	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SH3GL1	6455	hgsc.bcm.edu	37	19	4363421	4363421	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMC6	79677	hgsc.bcm.edu	37	2	17922877	17922877	+	Splice_Site	SNP	A	A	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SOX6	55553	hgsc.bcm.edu	37	11	16010675	16010675	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF1	6872	hgsc.bcm.edu	37	X	70613215	70613215	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAF1A	9015	hgsc.bcm.edu	37	1	222736578	222736578	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TDRKH	11022	hgsc.bcm.edu	37	1	151751697	151751697	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TGS1	96764	hgsc.bcm.edu	37	8	56711602	56711602	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNIP1	10318	hgsc.bcm.edu	37	5	150422134	150422134	+	Silent	SNP	G	G	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRMT2B	79979	hgsc.bcm.edu	37	X	100265618	100265618	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TUBGCP6	85378	hgsc.bcm.edu	37	22	50665215	50665215	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UNG	7374	hgsc.bcm.edu	37	12	109541417	109541417	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UXS1	80146	hgsc.bcm.edu	37	2	106729163	106729163	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR87	83889	hgsc.bcm.edu	37	19	38382417	38382417	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WWOX	51741	hgsc.bcm.edu	37	16	78466519	78466519	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFPM2	23414	hgsc.bcm.edu	37	8	106815608	106815608	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZHX1	11244	hgsc.bcm.edu	37	8	124267674	124267674	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZMYM1	79830	hgsc.bcm.edu	37	1	35570190	35570190	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF385B	151126	hgsc.bcm.edu	37	2	180310276	180310276	+	Splice_Site	SNP	C	C	T	novel	.	TCGA-AK-3428-01A-02D-1361-10	TCGA-AK-3428-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
