Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABI2	10152	hgsc.bcm.edu	37	2	204259531	204259531	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AIFM3	150209	hgsc.bcm.edu	37	22	21331182	21331182	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
APOB	338	hgsc.bcm.edu	37	2	21224845	21224845	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCAN	63827	hgsc.bcm.edu	37	1	156626162	156626162	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRD8	10902	hgsc.bcm.edu	37	5	137488285	137488285	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BTBD12	84464	hgsc.bcm.edu	37	16	3652234	3652234	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf131	138724	hgsc.bcm.edu	37	9	35043871	35043871	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CATSPER4	378807	hgsc.bcm.edu	37	1	26520358	26520358	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC114	93233	hgsc.bcm.edu	37	19	48809521	48809521	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC144B	284047	hgsc.bcm.edu	37	17	18486814	18486815	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDK18	5129	hgsc.bcm.edu	37	1	205494268	205494268	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CELF4	56853	hgsc.bcm.edu	37	18	35145518	35145518	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CKAP5	9793	hgsc.bcm.edu	37	11	46784271	46784271	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COMMD9	29099	hgsc.bcm.edu	37	11	36298648	36298648	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DACT1	51339	hgsc.bcm.edu	37	14	59107540	59107540	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCC	1630	hgsc.bcm.edu	37	18	50918089	50918089	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DSCAM	1826	hgsc.bcm.edu	37	21	41516473	41516474	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EAPP	55837	hgsc.bcm.edu	37	14	34985595	34985595	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EFCAB3	146779	hgsc.bcm.edu	37	17	60484560	60484560	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERCC4	2072	hgsc.bcm.edu	37	16	14015889	14015889	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM18B	51030	hgsc.bcm.edu	37	17	18694277	18694277	+	Missense_Mutation	SNP	G	G	A	rs61075345	unknown	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM72A	729533	hgsc.bcm.edu	37	1	206153974	206153974	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FER1L6	654463	hgsc.bcm.edu	37	8	125015549	125015549	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HELQ	113510	hgsc.bcm.edu	37	4	84362515	84362515	+	Nonsense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL18R1	8809	hgsc.bcm.edu	37	2	103013085	103013085	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNU1	157855	hgsc.bcm.edu	37	8	36694387	36694387	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
METT5D1	196074	hgsc.bcm.edu	37	11	28352293	28352293	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NNT	23530	hgsc.bcm.edu	37	5	43659277	43659277	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOX4	50507	hgsc.bcm.edu	37	11	89088168	89088168	+	Silent	SNP	G	G	A	rs75735530	unknown	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NR2C1	7181	hgsc.bcm.edu	37	12	95452258	95452258	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OAS1	4938	hgsc.bcm.edu	37	12	113348901	113348901	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAPD7	11044	hgsc.bcm.edu	37	5	6749688	6749688	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLQ	10721	hgsc.bcm.edu	37	3	121207099	121207099	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47162268	47162269	+	Frame_Shift_Del	DEL	AT	AT	-	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	AT	AT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIRT5	23408	hgsc.bcm.edu	37	6	13601129	13601129	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
THBS2	7058	hgsc.bcm.edu	37	6	169634863	169634863	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TPP1	1200	hgsc.bcm.edu	37	11	6638044	6638044	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM64	120146	hgsc.bcm.edu	37	11	89706921	89706921	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTN	7273	hgsc.bcm.edu	37	2	179437262	179437262	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTYH2	94015	hgsc.bcm.edu	37	17	72256287	72256287	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UIMC1	51720	hgsc.bcm.edu	37	5	176338345	176338345	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10188321	10188321	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13A	23230	hgsc.bcm.edu	37	9	79910474	79910474	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZCCHC6	79670	hgsc.bcm.edu	37	9	88903626	88903626	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF248	57209	hgsc.bcm.edu	37	10	38121983	38121983	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF304	57343	hgsc.bcm.edu	37	19	57867886	57867886	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF43	7594	hgsc.bcm.edu	37	19	21992281	21992281	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4814-01A-01D-1361-10	TCGA-B0-4814-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
