Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
CA14	23632	broad.mit.edu	37	1	150235516	150235516	+	Missense_Mutation	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:150235516A>G	uc001etx.2	+	7	947	c.638A>G	c.(637-639)AAT>AGT	p.N213S		NM_012113	NP_036245	Q9ULX7	CAH14_HUMAN	carbonic anhydrase XIV precursor	213	Extracellular (Potential).					integral to membrane	carbonate dehydratase activity|metal ion binding			ovary(1)	1	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTCCGCTACAATGGCTCGCTC	0.517													36	79	---	---	---	---	PASS
MEX3A	92312	broad.mit.edu	37	1	156046832	156046832	+	Missense_Mutation	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:156046832C>A	uc001fnd.3	-	2	1096	c.1096G>T	c.(1096-1098)GGC>TGC	p.G366C		NM_001093725	NP_001087194	A1L020	MEX3A_HUMAN	MEX3A protein	366						cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					AGGTACCCGCCGTAGCCAAAG	0.677													4	39	---	---	---	---	PASS
PIGM	93183	broad.mit.edu	37	1	160001252	160001252	+	Missense_Mutation	SNP	A	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:160001252A>T	uc001fuv.1	-	1	532	c.278T>A	c.(277-279)CTC>CAC	p.L93H		NM_145167	NP_660150	Q9H3S5	PIGM_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	93	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTTCCAAAGAGCTCGCTGAG	0.617													17	44	---	---	---	---	PASS
ANKRD20B	729171	broad.mit.edu	37	2	95483188	95483188	+	5'UTR	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:95483188T>C	uc010fhq.1	-	1					ANKRD20B_uc010fhp.2_Intron	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TTTATTATCCTAATAAAATTT	0.274													2	9	---	---	---	---	PASS
SSFA2	6744	broad.mit.edu	37	2	182774683	182774683	+	Missense_Mutation	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:182774683A>G	uc002uoi.2	+	9	1793	c.1471A>G	c.(1471-1473)ACG>GCG	p.T491A	SSFA2_uc002uoh.2_Missense_Mutation_p.T491A|SSFA2_uc002uoj.2_Missense_Mutation_p.T491A|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.T338A|SSFA2_uc002uol.2_Missense_Mutation_p.T338A	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	491						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			GCTAGGTCTTACGAAGTCGAA	0.383													14	41	---	---	---	---	PASS
CRYGA	1418	broad.mit.edu	37	2	209028037	209028037	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:209028037C>T	uc002vcq.3	-	2	160	c.143G>A	c.(142-144)CGT>CAT	p.R48H		NM_014617	NP_055432	P11844	CRGA_HUMAN	crystallin, gamma A	48	Beta/gamma crystallin 'Greek key' 2.				visual perception		structural constituent of eye lens				0				Epithelial(149;0.067)|LUSC - Lung squamous cell carcinoma(261;0.0708)|Lung(261;0.135)		GTAATTGGGACGCTCATAGAG	0.587													5	66	---	---	---	---	PASS
IRS1	3667	broad.mit.edu	37	2	227661146	227661146	+	Missense_Mutation	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:227661146G>T	uc002voh.3	-	1	2361	c.2309C>A	c.(2308-2310)TCC>TAC	p.S770Y		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	770					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		GTGCTTAAAGGATCTTGGCAA	0.627													69	222	---	---	---	---	PASS
ANO7	50636	broad.mit.edu	37	2	242163570	242163570	+	3'UTR	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:242163570G>A	uc002wax.2	+	25						NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long							cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						CAGCAGTGACGCCTGGAAGGA	0.647													20	56	---	---	---	---	PASS
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Missense_Mutation	SNP	C	G	G	rs5030826		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:10183725C>G	uc003bvc.2	+	1	407	c.194C>G	c.(193-195)TCG>TGG	p.S65W	VHL_uc003bvd.2_Missense_Mutation_p.S65W	NM_000551	NP_000542	P40337	VHL_HUMAN	von Hippel-Lindau tumor suppressor isoform 1	65			S -> L (in VHLD; type I).|S -> A (in pheochromocytoma).|S -> W (in VHLD; type I).		anti-apoptosis|cell morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cell differentiation|positive regulation of transcription, DNA-dependent|protein stabilization|protein ubiquitination|proteolysis	cytosol|endoplasmic reticulum|membrane|mitochondrion|nucleus	protein binding|transcription factor binding	p.S65*(8)|p.S65L(8)|p.S65S(2)|p.S65W(2)|p.S65fs*2(2)|p.S65P(1)|p.E52_S65del(1)|p.S65fs*92(1)|p.R60fs*35(1)|p.S65>Q(1)|p.S65_N67del(1)|p.P61fs*61(1)|p.R64fs*63(1)|p.V62fs*1(1)		kidney(1273)|soft_tissue(24)|adrenal_gland(15)|large_intestine(13)|pancreas(5)|endometrium(4)|thyroid(3)|upper_aerodigestive_tract(3)|central_nervous_system(2)|lung(2)|pleura(1)|paratesticular_tissues(1)	1346				Kidney(1;0.000404)|KIRC - Kidney renal clear cell carcinoma(1;0.000569)		GTGCTGCGCTCGGTGAACTCG	0.721		1	D|Mis|N|F|S		renal|hemangioma|pheochromocytoma	renal|hemangioma|pheochromocytoma			von_Hippel-Lindau_disease|Chuvash_Polycythemia_|Pheochromocytoma_(Adrenal)_Familial				4	5	---	---	---	---	PASS
CELSR3	1951	broad.mit.edu	37	3	48697119	48697119	+	Missense_Mutation	SNP	G	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:48697119G>C	uc003cul.2	-	1	3230	c.2949C>G	c.(2947-2949)ATC>ATG	p.I983M	CELSR3_uc003cuf.1_Missense_Mutation_p.I1053M	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	983	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAGTGGCTGAGATCTGCAGGA	0.532													17	35	---	---	---	---	PASS
HYAL2	8692	broad.mit.edu	37	3	50357640	50357640	+	Missense_Mutation	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:50357640C>G	uc003czu.2	-	2	501	c.281G>C	c.(280-282)AGG>ACG	p.R94T	HYAL2_uc003czx.2_Missense_Mutation_p.R94T|HYAL2_uc003czv.2_Missense_Mutation_p.R94T|HYAL2_uc003czw.2_Missense_Mutation_p.R94T|HYAL2_uc010hlj.2_Missense_Mutation_p.R94T	NM_033158	NP_149348	Q12891	HYAL2_HUMAN	hyaluronoglucosaminidase 2 precursor	94						anchored to membrane|lysosome|plasma membrane	hyalurononglucosaminidase activity|receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)	Hyaluronidase(DB00070)	ATGCACAGACCTTCCGGCAGA	0.537													10	32	---	---	---	---	PASS
MRAS	22808	broad.mit.edu	37	3	138117372	138117372	+	Missense_Mutation	SNP	A	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:138117372A>T	uc003esh.3	+	4	970	c.409A>T	c.(409-411)ACC>TCC	p.T137S	MRAS_uc011bmi.1_Missense_Mutation_p.T61S|MRAS_uc003esi.3_Missense_Mutation_p.T137S|MRAS_uc011bmj.1_Missense_Mutation_p.T61S	NM_012219	NP_036351	O14807	RASM_HUMAN	muscle RAS oncogene homolog precursor	137					actin cytoskeleton organization|muscle organ development|Ras protein signal transduction	intracellular|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity			lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GAGGAAGATCACCAGGGAGCA	0.507													48	47	---	---	---	---	PASS
ADAM29	11086	broad.mit.edu	37	4	175898804	175898804	+	Missense_Mutation	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:175898804G>T	uc003iuc.2	+	5	2798	c.2128G>T	c.(2128-2130)GTT>TTT	p.V710F	ADAM29_uc003iud.2_Missense_Mutation_p.V710F|ADAM29_uc010irr.2_Missense_Mutation_p.V710F|ADAM29_uc011cki.1_Missense_Mutation_p.V710F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	710	Cytoplasmic (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GCAGCAAGATGTTCAAACTCC	0.368													26	53	---	---	---	---	PASS
F2RL2	2151	broad.mit.edu	37	5	75913608	75913608	+	Silent	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:75913608C>A	uc003kem.2	-	2	1109	c.924G>T	c.(922-924)GTG>GTT	p.V308V	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Silent_p.V286V	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	308	Helical; Name=6; (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		TGGTAAAAATCACAAGGATGA	0.368													3	35	---	---	---	---	PASS
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607													5	14	---	---	---	---	PASS
ADAMTS19	171019	broad.mit.edu	37	5	129015555	129015555	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:129015555C>T	uc003kvb.1	+	17	2587	c.2587C>T	c.(2587-2589)CGA>TGA	p.R863*	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	863	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TTATGTAAGACGAGGCCTCTG	0.438													37	218	---	---	---	---	PASS
F12	2161	broad.mit.edu	37	5	176831333	176831333	+	Missense_Mutation	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:176831333C>A	uc003mgo.3	-	9	931	c.882G>T	c.(880-882)CAG>CAT	p.Q294H	F12_uc011dfy.1_5'UTR|F12_uc003mgn.3_5'UTR|F12_uc010jkl.2_RNA	NM_000505	NP_000496	P00748	FA12_HUMAN	coagulation factor XII precursor	294	Kringle.				Factor XII activation|fibrinolysis|innate immune response|positive regulation of blood coagulation|positive regulation of fibrinolysis|positive regulation of plasminogen activation|protein autoprocessing|response to misfolded protein|zymogen activation	extracellular space|plasma membrane	serine-type endopeptidase activity				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGTCTGGCACTGTGCCAGGT	0.692									Hereditary_Angioedema		OREG0017088	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	46	---	---	---	---	PASS
DBN1	1627	broad.mit.edu	37	5	176893974	176893974	+	Silent	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:176893974C>A	uc003mgy.2	-	7	817	c.645G>T	c.(643-645)CGG>CGT	p.R215R	DBN1_uc003mgx.2_Silent_p.R217R|DBN1_uc010jkn.1_Silent_p.R165R|DBN1_uc003mgz.1_Silent_p.R152R	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	215					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTTGCTCCTGCCGCTCCTGCT	0.692													72	51	---	---	---	---	PASS
ZNF354C	30832	broad.mit.edu	37	5	178507172	178507172	+	3'UTR	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:178507172G>A	uc003mju.2	+	5						NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		ACTCCTAATAGATTTGTCTTT	0.338													9	50	---	---	---	---	PASS
TRIM41	90933	broad.mit.edu	37	5	180651530	180651530	+	Silent	SNP	T	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:180651530T>A	uc003mne.1	+	1	1225	c.531T>A	c.(529-531)CCT>CCA	p.P177P	uc003mnb.1_3'UTR|TRIM41_uc003mnc.1_Silent_p.P177P|TRIM41_uc003mnd.1_Silent_p.P177P|TRIM41_uc003mnf.1_RNA	NM_033549	NP_291027	Q8WV44	TRI41_HUMAN	tripartite motif-containing 41 isoform 1	177						cytoplasm|nucleus	ligase activity|protein binding|zinc ion binding				0	all_cancers(89;9.17e-06)|all_epithelial(37;1.19e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTCCAGCCCCTCGGAGGTGCT	0.448													11	64	---	---	---	---	PASS
TDP2	51567	broad.mit.edu	37	6	24658870	24658870	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:24658870G>A	uc003nej.2	-	3	369	c.344C>T	c.(343-345)TCT>TTT	p.S115F	TDP2_uc003nei.2_Missense_Mutation_p.S3F|TDP2_uc010jpu.1_Missense_Mutation_p.S115F	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	115					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						GGTAATGAGAGAGAACATGCT	0.408								Direct_reversal_of_damage|Editing_and_processing_nucleases					46	125	---	---	---	---	PASS
LRRC16A	55604	broad.mit.edu	37	6	25509937	25509937	+	Silent	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:25509937C>T	uc011djw.1	+	18	1825	c.1449C>T	c.(1447-1449)AAC>AAT	p.N483N	LRRC16A_uc010jpx.2_Silent_p.N483N|LRRC16A_uc010jpy.2_Silent_p.N483N	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	483	LRR 7.				actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						AAATACACAACATCACCAGCT	0.353													3	16	---	---	---	---	PASS
TNXB	7148	broad.mit.edu	37	6	31977552	31977552	+	Silent	SNP	C	G	G	rs77471377		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:31977552C>G	uc011dpc.1	-	12	2352	c.1443G>C	c.(1441-1443)CGG>CGC	p.R481R		NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	4097	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGGGCCGCTCCCGGTTGCCGT	0.667													3	42	---	---	---	---	PASS
MDN1	23195	broad.mit.edu	37	6	90513110	90513110	+	Missense_Mutation	SNP	T	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:90513110T>G	uc003pnn.1	-	2	382	c.266A>C	c.(265-267)GAT>GCT	p.D89A	MDN1_uc003pnp.1_Missense_Mutation_p.D89A	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	89					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTCATGCAGATCATGGTTGAT	0.478													68	251	---	---	---	---	PASS
OR2AE1	81392	broad.mit.edu	37	7	99474477	99474477	+	Silent	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:99474477A>G	uc003usc.1	-	1	180	c.180T>C	c.(178-180)TAT>TAC	p.Y60Y		NM_001005276	NP_001005276	Q8NHA4	O2AE1_HUMAN	olfactory receptor, family 2, subfamily AE,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TGAGCAGGAAATACATTGGTG	0.478													24	79	---	---	---	---	PASS
ZKSCAN1	7586	broad.mit.edu	37	7	99631276	99631276	+	Missense_Mutation	SNP	G	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:99631276G>C	uc003usk.1	+	6	1367	c.1148G>C	c.(1147-1149)GGT>GCT	p.G383A	ZKSCAN1_uc003usl.1_Missense_Mutation_p.G347A|ZKSCAN1_uc003usm.1_Missense_Mutation_p.G170A	NM_003439	NP_003430	P17029	ZKSC1_HUMAN	zinc finger protein 36	383	C2H2-type 1.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			GATGAATGTGGTAAATGCTTC	0.458													29	134	---	---	---	---	PASS
NUP205	23165	broad.mit.edu	37	7	135333377	135333377	+	3'UTR	SNP	T	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:135333377T>G	uc003vsw.2	+	43					NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa						carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GATTAGTTTCTTTCTAAATTA	0.353													10	39	---	---	---	---	PASS
TNKS	8658	broad.mit.edu	37	8	9413533	9413533	+	Silent	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:9413533G>T	uc003wss.2	+	1	89	c.84G>T	c.(82-84)CCG>CCT	p.P28P	TNKS_uc011kwv.1_Silent_p.P28P|uc003wsr.1_RNA	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	28	Poly-Pro.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		CAGCGCCGCCGCCGCCACCTC	0.731													9	10	---	---	---	---	PASS
LOXL2	4017	broad.mit.edu	37	8	23217701	23217701	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:23217701C>T	uc003xdh.1	-	3	772	c.433G>A	c.(433-435)GTC>ATC	p.V145I	uc003xdj.2_Intron	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	145	SRCR 1.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CAGTCAGTGACGCCCCAGCCA	0.542													11	28	---	---	---	---	PASS
RBPMS	11030	broad.mit.edu	37	8	30402150	30402150	+	Intron	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:30402150T>C	uc003xic.1	+						RBPMS_uc003xid.1_Intron|RBPMS_uc003xie.1_Intron|RBPMS_uc003xif.1_Intron|RBPMS_uc011lba.1_Silent_p.D179D|RBPMS_uc003xib.2_Intron|RBPMS_uc010lvh.1_Silent_p.D75D	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing						positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		AGGTAATTGATACCCATCGGC	0.537													43	107	---	---	---	---	PASS
RBPMS	11030	broad.mit.edu	37	8	30402171	30402171	+	Intron	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:30402171C>G	uc003xic.1	+						RBPMS_uc003xid.1_Intron|RBPMS_uc003xie.1_Intron|RBPMS_uc003xif.1_Intron|RBPMS_uc011lba.1_Missense_Mutation_p.H186Q|RBPMS_uc003xib.2_Intron|RBPMS_uc010lvh.1_Missense_Mutation_p.H82Q	NM_006867	NP_006858	Q93062	RBPMS_HUMAN	RNA-binding protein with multiple splicing						positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|regulation of transcription, DNA-dependent|RNA processing|transcription, DNA-dependent	cytoplasm|nucleus	nucleotide binding|poly(A) RNA binding|protein binding|transcription coactivator activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(542;0.144)|Kidney(114;0.172)		CAGGACTTCACTCACTTCACC	0.512													35	92	---	---	---	---	PASS
TRPS1	7227	broad.mit.edu	37	8	116635942	116635942	+	Intron	SNP	C	T	T	rs2721939	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:116635942C>T	uc003ynz.2	-						TRPS1_uc011lhy.1_Intron|TRPS1_uc003yny.2_5'UTR|TRPS1_uc010mcy.2_5'UTR	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1						negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TCTTAGAAGACGCTCAGAAGA	0.348									Langer-Giedion_syndrome				4	27	---	---	---	---	PASS
CPSF1	29894	broad.mit.edu	37	8	145634429	145634429	+	Silent	SNP	G	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:145634429G>C	uc003zcj.2	-	2	189	c.114C>G	c.(112-114)CTC>CTG	p.L38L	CPSF1_uc011lle.1_Silent_p.L38L|CPSF1_uc011llf.1_Silent_p.L38L|CPSF1_uc003zcl.1_RNA	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	38					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GGTACACGTAGAGCTGCGAGG	0.517													25	83	---	---	---	---	PASS
TTC39B	158219	broad.mit.edu	37	9	15211317	15211317	+	Silent	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:15211317C>T	uc003zlr.1	-	5	484	c.363G>A	c.(361-363)CAG>CAA	p.Q121Q	TTC39B_uc003zlq.1_Silent_p.Q90Q|TTC39B_uc011lmp.1_Silent_p.Q22Q|TTC39B_uc010mie.1_Silent_p.Q121Q|TTC39B_uc011lmq.1_Silent_p.Q121Q|TTC39B_uc011lmr.1_Silent_p.Q52Q|TTC39B_uc010mif.1_Silent_p.Q121Q|TTC39B_uc003zls.1_Silent_p.Q22Q|TTC39B_uc010mig.1_Silent_p.Q90Q|TTC39B_uc011lms.1_RNA	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	121							binding			ovary(1)	1						TCTGGATGTCCTGTTGCTCGA	0.463													48	106	---	---	---	---	PASS
MLLT3	4300	broad.mit.edu	37	9	20346392	20346392	+	3'UTR	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:20346392C>A	uc003zoe.2	-	11					MLLT3_uc011lne.1_3'UTR|MLLT3_uc011lnf.1_3'UTR	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		aaaaaaaaaaccaaaaaaaaa	0.299			T	MLL	ALL								5	27	---	---	---	---	PASS
MLLT3	4300	broad.mit.edu	37	9	20346394	20346394	+	3'UTR	SNP	A	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:20346394A>C	uc003zoe.2	-	11					MLLT3_uc011lne.1_3'UTR|MLLT3_uc011lnf.1_3'UTR	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		aaaaaaaaccaaaaaaaaaaa	0.299			T	MLL	ALL								5	29	---	---	---	---	PASS
SURF4	6836	broad.mit.edu	37	9	136233529	136233529	+	Silent	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:136233529G>A	uc004cdj.2	-	3	388	c.258C>T	c.(256-258)AGC>AGT	p.S86S	SURF4_uc011mda.1_Silent_p.S77S|SURF4_uc010nal.2_Silent_p.S118S|SURF4_uc011mdb.1_Silent_p.S43S|SURF4_uc011mdc.1_Silent_p.S43S|SURF4_uc011mdd.1_Silent_p.S86S	NM_033161	NP_149351	O15260	SURF4_HUMAN	surfeit 4	86						endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.32e-07)|Epithelial(140;4.56e-06)|all cancers(34;4.25e-05)		CGAAGTTCCTGCTCAACACCA	0.612													18	51	---	---	---	---	PASS
HTR7	3363	broad.mit.edu	37	10	92508881	92508881	+	Missense_Mutation	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr10:92508881G>T	uc001kha.2	-	2	1253	c.1010C>A	c.(1009-1011)ACC>AAC	p.T337N	HTR7_uc001kgz.2_Missense_Mutation_p.T337N|HTR7_uc001khb.2_Missense_Mutation_p.T337N	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	337	Helical; Name=6; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	CCAGCACACGGTAAAGGCCCC	0.532													18	46	---	---	---	---	PASS
ZNF518A	9849	broad.mit.edu	37	10	97920188	97920188	+	Silent	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr10:97920188T>C	uc001klp.2	+	7	4967	c.4110T>C	c.(4108-4110)TTT>TTC	p.F1370F	ZNF518A_uc001klo.1_3'UTR|ZNF518A_uc001klq.2_3'UTR|ZNF518A_uc001klr.2_3'UTR	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	1370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		TTGCTAAATTTAATGGACATG	0.328													58	172	---	---	---	---	PASS
KIAA1598	57698	broad.mit.edu	37	10	118645923	118645923	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr10:118645923C>T	uc009xyw.2	-	17	2326	c.1828G>A	c.(1828-1830)GAA>AAA	p.E610K	KIAA1598_uc001lcz.3_3'UTR|KIAA1598_uc010qso.1_Missense_Mutation_p.E550K|KIAA1598_uc001lcy.3_Missense_Mutation_p.E580K|KIAA1598_uc001lda.1_RNA	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	610					axon guidance	axon					0				all cancers(201;0.00494)		GGTTGAATTTCGCCTTCATCC	0.433													5	16	---	---	---	---	PASS
UBQLNL	143630	broad.mit.edu	37	11	5537653	5537653	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:5537653G>A	uc001maz.3	-	1	304	c.19C>T	c.(19-21)CGA>TGA	p.R7*	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	7										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		CTGGATGTTCGAGAGATGGCA	0.537													40	82	---	---	---	---	PASS
ANO5	203859	broad.mit.edu	37	11	22242734	22242734	+	Missense_Mutation	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:22242734A>G	uc001mqi.2	+	5	589	c.272A>G	c.(271-273)AAG>AGG	p.K91R	ANO5_uc001mqj.2_Missense_Mutation_p.K90R	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	91	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GATGATGTAAAGAAAGACGCA	0.348													25	66	---	---	---	---	PASS
MADD	8567	broad.mit.edu	37	11	47336865	47336865	+	Missense_Mutation	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:47336865T>C	uc001ner.1	+	30	4555	c.4364T>C	c.(4363-4365)ATC>ACC	p.I1455T	MADD_uc001neq.2_Missense_Mutation_p.I1396T|MADD_uc001nev.1_Missense_Mutation_p.I1353T|MADD_uc001nes.1_Missense_Mutation_p.I1373T|MADD_uc001net.1_Missense_Mutation_p.I1416T|MADD_uc009yln.1_Missense_Mutation_p.I1349T|MADD_uc001neu.1_Missense_Mutation_p.I1353T|MADD_uc001nex.2_Missense_Mutation_p.I1455T|MADD_uc001nez.2_Missense_Mutation_p.I1352T|MADD_uc001new.2_Missense_Mutation_p.I1395T|MADD_uc009ylo.2_Missense_Mutation_p.I369T	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1455					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		AACGGAGATATCTTTTTCATG	0.493													13	31	---	---	---	---	PASS
NRXN2	9379	broad.mit.edu	37	11	64434814	64434814	+	Missense_Mutation	SNP	A	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:64434814A>C	uc001oar.2	-	10	2145	c.1706T>G	c.(1705-1707)ATG>AGG	p.M569R	NRXN2_uc001oas.2_Missense_Mutation_p.M538R|NRXN2_uc001oaq.2_Missense_Mutation_p.M236R	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCCAGATCCCATGTCCAGCAG	0.622													31	82	---	---	---	---	PASS
ARHGEF17	9828	broad.mit.edu	37	11	73066597	73066597	+	Missense_Mutation	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:73066597T>C	uc001otu.2	+	4	3494	c.3473T>C	c.(3472-3474)GTA>GCA	p.V1158A		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1158	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						GATGTCCTAGTAAACATCTAT	0.517													22	38	---	---	---	---	PASS
FAT3	120114	broad.mit.edu	37	11	92590423	92590423	+	Silent	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:92590423G>A	uc001pdj.3	+	19	11426	c.11409G>A	c.(11407-11409)CCG>CCA	p.P3803P	FAT3_uc001pdi.3_Silent_p.P243P	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3803	EGF-like 1.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGAGAAGCCGTGTCCAGGGG	0.557										TCGA Ovarian(4;0.039)			23	90	---	---	---	---	PASS
CEP57	9702	broad.mit.edu	37	11	95564238	95564238	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:95564238A>T	uc001pfp.1	+	11	1542	c.1321A>T	c.(1321-1323)AAA>TAA	p.K441*	CEP57_uc010ruh.1_Nonsense_Mutation_p.K432*|CEP57_uc010rui.1_Nonsense_Mutation_p.K415*|CEP57_uc009ywn.1_Nonsense_Mutation_p.K289*|CEP57_uc001pfq.1_Nonsense_Mutation_p.K415*|CEP57_uc001pfr.1_Nonsense_Mutation_p.K289*	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	441	Mediates interaction with microtubules (By similarity).|Potential.				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AAAAGCTACCAAAAAGACTCT	0.368									Mosaic_Variegated_Aneuploidy_Syndrome				18	37	---	---	---	---	PASS
CEP57	9702	broad.mit.edu	37	11	95564248	95564248	+	Missense_Mutation	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:95564248T>C	uc001pfp.1	+	11	1552	c.1331T>C	c.(1330-1332)CTT>CCT	p.L444P	CEP57_uc010ruh.1_Missense_Mutation_p.L435P|CEP57_uc010rui.1_Missense_Mutation_p.L418P|CEP57_uc009ywn.1_Missense_Mutation_p.L292P|CEP57_uc001pfq.1_Missense_Mutation_p.L418P|CEP57_uc001pfr.1_Missense_Mutation_p.L292P	NM_014679	NP_055494	Q86XR8	CEP57_HUMAN	translokin	444	Mediates interaction with microtubules (By similarity).|Potential.				fibroblast growth factor receptor signaling pathway|G2/M transition of mitotic cell cycle|protein import into nucleus, translocation|spermatid development	centrosome|cytosol|Golgi apparatus|microtubule|nucleus	fibroblast growth factor binding|protein homodimerization activity			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AAAAAGACTCTTGATGAAGAA	0.373									Mosaic_Variegated_Aneuploidy_Syndrome				16	31	---	---	---	---	PASS
ABCG4	64137	broad.mit.edu	37	11	119029566	119029566	+	Missense_Mutation	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:119029566G>T	uc001pvs.2	+	12	1700	c.1364G>T	c.(1363-1365)AGG>ATG	p.R455M	ABCG4_uc009zar.2_Missense_Mutation_p.R455M	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	455	ABC transmembrane type-2.|Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GTCTTCATGAGGGAGCACCTC	0.627													75	196	---	---	---	---	PASS
CHD4	1108	broad.mit.edu	37	12	6701596	6701596	+	Missense_Mutation	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:6701596C>G	uc001qpo.2	-	19	3075	c.2911G>C	c.(2911-2913)GAA>CAA	p.E971Q	CHD4_uc001qpn.2_Missense_Mutation_p.E964Q|CHD4_uc001qpp.2_Missense_Mutation_p.E968Q	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	971					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ACAATTAGTTCTGTCTTGGAG	0.517													5	112	---	---	---	---	PASS
OVCH1	341350	broad.mit.edu	37	12	29629166	29629166	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:29629166C>T	uc001rix.1	-	13	1444	c.1444G>A	c.(1444-1446)GGT>AGT	p.G482S		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	482	CUB 2.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TCAGAATCACCGTAAATCACA	0.398													39	188	---	---	---	---	PASS
MBD6	114785	broad.mit.edu	37	12	57919671	57919671	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:57919671C>T	uc001soj.1	+	6	1144	c.920C>T	c.(919-921)GCC>GTC	p.A307V	MBD6_uc001sok.1_Missense_Mutation_p.A174V|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	307	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						CTGGGAGGGGCCCCCACGGTG	0.682													21	61	---	---	---	---	PASS
NAV3	89795	broad.mit.edu	37	12	78400326	78400326	+	Silent	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:78400326C>G	uc001syp.2	+	8	1181	c.1008C>G	c.(1006-1008)TCC>TCG	p.S336S	NAV3_uc001syo.2_Silent_p.S336S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	336						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GCAGCAAGTCCATGAATGTCA	0.562										HNSCC(70;0.22)			36	64	---	---	---	---	PASS
BRCA2	675	broad.mit.edu	37	13	32899270	32899270	+	Missense_Mutation	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:32899270A>G	uc001uub.1	+	4	601	c.374A>G	c.(373-375)GAT>GGT	p.D125G	BRCA2_uc001uua.1_Missense_Mutation_p.D2G	NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	125					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		ACTAAAATGGATCAAGCAGAT	0.313			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			15	56	---	---	---	---	PASS
DDX24	57062	broad.mit.edu	37	14	94517732	94517732	+	Silent	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:94517732C>A	uc001ycj.2	-	9	2484	c.2385G>T	c.(2383-2385)CTG>CTT	p.L795L	DDX24_uc010twq.1_Silent_p.L752L|DDX24_uc010twr.1_Silent_p.L545L	NM_020414	NP_065147	Q9GZR7	DDX24_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	795					RNA metabolic process	cytoplasm|nucleolus|nucleolus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(2)|kidney(1)|skin(1)	4		all_cancers(154;0.12)		Epithelial(152;0.114)|all cancers(159;0.19)|COAD - Colon adenocarcinoma(157;0.207)		GCTGGGACAGCAGGTGGCGCA	0.517											OREG0022891	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	68	---	---	---	---	PASS
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42137191	42137191	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:42137191G>A	uc010bco.2	+	13	1263	c.1162G>A	c.(1162-1164)GAG>AAG	p.E388K	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.E619K|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.E619K|JMJD7-PLA2G4B_uc001zoq.3_Missense_Mutation_p.E89K|JMJD7-PLA2G4B_uc001zor.1_Missense_Mutation_p.E89K	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	388	PLA2c.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						GGAGCTGGCCGAGCGTGCCCG	0.572													3	8	---	---	---	---	PASS
KIAA0430	9665	broad.mit.edu	37	16	15728825	15728825	+	Intron	SNP	G	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:15728825G>C	uc002ddr.2	-						KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Intron|KIAA0430_uc010uzw.1_Intron|KIAA0430_uc010uzx.1_3'UTR	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1							peroxisome	nucleotide binding|RNA binding				0						GGAGGTGTCAGATACATCATT	0.358													14	62	---	---	---	---	PASS
TBX6	6911	broad.mit.edu	37	16	30099894	30099894	+	Missense_Mutation	SNP	A	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:30099894A>T	uc010veh.1	-	6	871	c.811T>A	c.(811-813)TTC>ATC	p.F271I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TBX6_uc002dwk.1_Missense_Mutation_p.F271I	NM_004608	NP_004599	O95947	TBX6_HUMAN	T-box 6	271	T-box.				anatomical structure morphogenesis|mesoderm development|multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2						TTCTCCCGGAAGCCTTTGGCA	0.413													69	99	---	---	---	---	PASS
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													6	115	---	---	---	---	PASS
JPH3	57338	broad.mit.edu	37	16	87677876	87677876	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:87677876G>A	uc002fkd.2	+	2	649	c.395G>A	c.(394-396)GGC>GAC	p.G132D	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	132	MORN 6.|Gly-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		ACCTACCAGGGCCAGTGGGTC	0.667													27	92	---	---	---	---	PASS
USP43	124739	broad.mit.edu	37	17	9559806	9559806	+	Silent	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:9559806A>G	uc010cod.2	+	2	591	c.591A>G	c.(589-591)GTA>GTG	p.V197V	USP43_uc002gma.3_5'UTR|USP43_uc010vva.1_Silent_p.V197V|USP43_uc010coe.2_Missense_Mutation_p.Y29C	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	197					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TGGATCGTGTACATGAGGACC	0.483													4	15	---	---	---	---	PASS
RAI1	10743	broad.mit.edu	37	17	17696713	17696713	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:17696713G>A	uc002grm.2	+	3	920	c.451G>A	c.(451-453)GTG>ATG	p.V151M	RAI1_uc002grn.1_Missense_Mutation_p.V151M	NM_030665	NP_109590	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	151						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)|skin(1)	2				READ - Rectum adenocarcinoma(1115;0.0276)		AAAGACAGCAGTGCCCCCCAG	0.662													21	47	---	---	---	---	PASS
FAM83G	644815	broad.mit.edu	37	17	18907263	18907263	+	Missense_Mutation	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:18907263T>C	uc002guw.2	-	2	259	c.92A>G	c.(91-93)CAG>CGG	p.Q31R	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	31										ovary(1)|central_nervous_system(1)	2						CGCCAGCCGCTGCTCCTCGCT	0.652													8	35	---	---	---	---	PASS
TBC1D3	729873	broad.mit.edu	37	17	36288290	36288290	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:36288290G>A	uc002hoo.2	+	6	533	c.376G>A	c.(376-378)GGA>AGA	p.G126R	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.G46R|TBC1D3_uc010cvf.1_Missense_Mutation_p.G126R|TBC1D3_uc002hoq.2_Missense_Mutation_p.G126R|TBC1D3_uc010wdk.1_Missense_Mutation_p.G187R|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	126	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAAAAACCCCGGAAGATACCA	0.572													31	613	---	---	---	---	PASS
YPEL2	388403	broad.mit.edu	37	17	57474661	57474661	+	3'UTR	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:57474661G>T	uc002ixm.1	+	5						NM_001005404	NP_001005404	Q96QA6	YPEL2_HUMAN	yippee-like 2							nucleolus					0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TAGGGGCCTTGCCATCCGGGG	0.522													5	13	---	---	---	---	PASS
FLJ35220	284131	broad.mit.edu	37	17	78410119	78410119	+	3'UTR	SNP	T	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:78410119T>C	uc002jym.1	+	12						NM_173627	NP_775898	Q8N8Q3	ENDOV_HUMAN	hypothetical protein LOC284131 isoform 1						DNA repair		endodeoxyribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			TGATCGAACGTGgtggtgaga	0.294								Direct_reversal_of_damage|Editing_and_processing_nucleases					3	16	---	---	---	---	PASS
ADAT3	113179	broad.mit.edu	37	19	1913029	1913029	+	Missense_Mutation	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:1913029C>G	uc002luh.2	+	2	1163	c.935C>G	c.(934-936)TCG>TGG	p.S312W	SCAMP4_uc002lui.1_Intron|SCAMP4_uc002luj.2_Intron|SCAMP4_uc002luk.2_Intron|SCAMP4_uc010dss.2_Intron	NM_138422	NP_612431	Q96EY9	ADAT3_HUMAN	tRNA-specific adenosine deaminase 3	312					tRNA processing		hydrolase activity|zinc ion binding			breast(1)|skin(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTGCGCCCTCGCCCGACGGC	0.711													10	35	---	---	---	---	PASS
ADAT3	113179	broad.mit.edu	37	19	1913030	1913030	+	Silent	SNP	G	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:1913030G>T	uc002luh.2	+	2	1164	c.936G>T	c.(934-936)TCG>TCT	p.S312S	SCAMP4_uc002lui.1_Intron|SCAMP4_uc002luj.2_Intron|SCAMP4_uc002luk.2_Intron|SCAMP4_uc010dss.2_Intron	NM_138422	NP_612431	Q96EY9	ADAT3_HUMAN	tRNA-specific adenosine deaminase 3	312					tRNA processing		hydrolase activity|zinc ion binding			breast(1)|skin(1)	2		Ovarian(11;2.11e-07)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGCGCCCTCGCCCGACGGCG	0.711													11	32	---	---	---	---	PASS
CDC37	11140	broad.mit.edu	37	19	10503785	10503785	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:10503785C>T	uc002mof.1	-	7	1074	c.958G>A	c.(958-960)GCC>ACC	p.A320T	CDC37_uc002moe.1_Missense_Mutation_p.A275T|CDC37_uc010dxf.1_Missense_Mutation_p.A157T|CDC37_uc002mog.1_Missense_Mutation_p.A231T|CDC37_uc002moh.2_Missense_Mutation_p.A313T	NM_007065	NP_008996	Q16543	CDC37_HUMAN	cell division cycle 37 protein	320					protein targeting|regulation of cyclin-dependent protein kinase activity|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway		unfolded protein binding				0			OV - Ovarian serous cystadenocarcinoma(20;4.65e-10)|Epithelial(33;6.48e-07)|all cancers(31;2.31e-06)	GBM - Glioblastoma multiforme(1328;0.0318)		TTGCTGATGGCGTCCTGCAGC	0.662													4	69	---	---	---	---	PASS
CD22	933	broad.mit.edu	37	19	35837719	35837719	+	3'UTR	SNP	A	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:35837719A>G	uc010edt.2	+	14					CD22_uc010xst.1_3'UTR|CD22_uc010edu.2_3'UTR|CD22_uc010edv.2_3'UTR|CD22_uc002nzb.3_3'UTR|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor						cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	acacacacacacgcacacaca	0.502													2	7	---	---	---	---	PASS
SLC23A2	9962	broad.mit.edu	37	20	4880292	4880292	+	Missense_Mutation	SNP	C	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:4880292C>T	uc002wlg.1	-	6	766	c.391G>A	c.(391-393)GGG>AGG	p.G131R	SLC23A2_uc010zqr.1_Missense_Mutation_p.G130R|SLC23A2_uc002wlh.1_Missense_Mutation_p.G131R|SLC23A2_uc002wli.2_Missense_Mutation_p.G130R	NM_005116	NP_005107	Q9UGH3	S23A2_HUMAN	solute carrier family 23 (nucleobase	131					L-ascorbic acid metabolic process|molecular hydrogen transport|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|transepithelial L-ascorbic acid transport	apical plasma membrane|integral to plasma membrane|membrane fraction	nucleobase transmembrane transporter activity|sodium-dependent L-ascorbate transmembrane transporter activity|sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2						TGGTCGTACCCCACACACATG	0.542													61	163	---	---	---	---	PASS
TPTE	7179	broad.mit.edu	37	21	11014952	11014952	+	RNA	SNP	A	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr21:11014952A>T	uc002yis.1	-	7		c.1494T>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CACATTGTCTACATTGCAGAA	0.333													4	58	---	---	---	---	PASS
PFKL	5211	broad.mit.edu	37	21	45736400	45736400	+	Missense_Mutation	SNP	G	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr21:45736400G>A	uc002zel.2	+	9	988	c.929G>A	c.(928-930)CGG>CAG	p.R310Q	PFKL_uc002zek.2_Missense_Mutation_p.R357Q|PFKL_uc002zem.2_5'Flank|PFKL_uc002zen.2_5'Flank	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	310					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		GCCTTCGACCGGATCCTGGTA	0.428													3	53	---	---	---	---	PASS
ARSH	347527	broad.mit.edu	37	X	2951181	2951181	+	Missense_Mutation	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:2951181C>A	uc011mhj.1	+	9	1444	c.1444C>A	c.(1444-1446)CTC>ATC	p.L482I		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	482						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CCCACCACTCCTCTTTGACAT	0.478													26	23	---	---	---	---	PASS
NDUFB11	54539	broad.mit.edu	37	X	47002128	47002128	+	Missense_Mutation	SNP	C	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:47002128C>A	uc004dhd.2	-	2	754	c.223G>T	c.(223-225)GGT>TGT	p.G75C	NDUFB11_uc004dhc.2_Missense_Mutation_p.G75C|RBM10_uc004dhe.1_5'Flank|RBM10_uc004dhf.2_5'Flank|RBM10_uc004dhg.2_5'Flank|RBM10_uc004dhh.2_5'Flank|RBM10_uc010nhq.2_5'Flank|RBM10_uc004dhi.2_5'Flank	NM_001135998	NP_001129470	Q9NX14	NDUBB_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	75					respiratory electron transport chain|transport	integral to membrane|mitochondrial respiratory chain complex I					0						TTGTCATAACCATGGGAGTCT	0.473													3	61	---	---	---	---	PASS
KDM5C	8242	broad.mit.edu	37	X	53231127	53231127	+	Missense_Mutation	SNP	T	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:53231127T>A	uc004drz.2	-	13	2308	c.1775A>T	c.(1774-1776)GAG>GTG	p.E592V	KDM5C_uc011moc.1_RNA|KDM5C_uc011mod.1_Missense_Mutation_p.E525V|KDM5C_uc004dsa.2_Missense_Mutation_p.E591V	NM_004187	NP_004178	P41229	KDM5C_HUMAN	jumonji, AT rich interactive domain 1C isoform	592	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			kidney(9)|ovary(5)|salivary_gland(1)|autonomic_ganglia(1)|haematopoietic_and_lymphoid_tissue(1)|oesophagus(1)	18						GATGACAAACTCTCCTGCACA	0.498			N|F|S		clear cell renal carcinoma								36	15	---	---	---	---	PASS
PAGE5	90737	broad.mit.edu	37	X	55247874	55247874	+	Missense_Mutation	SNP	C	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:55247874C>G	uc004duj.2	+	2	361	c.119C>G	c.(118-120)TCC>TGC	p.S40C	PAGE5_uc004duk.2_Missense_Mutation_p.S20C	NM_130467	NP_569734	Q96GU1	GGEE1_HUMAN	P antigen family, member 5 isoform 1	40											0						CAAGAGTCTTCCCAGCCAGTT	0.348													4	55	---	---	---	---	PASS
CDK11B	984	broad.mit.edu	37	1	1633002	1633003	+	Intron	INS	-	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:1633002_1633003insC	uc001agv.1	-						CDK11B_uc001ags.1_Intron|CDK11B_uc001agt.1_Intron|CDK11B_uc001aha.1_Intron|CDK11B_uc001agw.1_Intron|CDK11B_uc001agy.1_Intron|CDK11B_uc001agx.1_Intron|CDK11B_uc001agz.1_Intron|SLC35E2B_uc001ahh.3_Intron|SLC35E2_uc009vkm.1_Intron|MMP23A_uc001ahi.1_Intron|MMP23A_uc009vko.1_Intron	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)						apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						GGGGCAGGCAGCGGGGGGGGGC	0.728													6	3	---	---	---	---	
SPATA21	374955	broad.mit.edu	37	1	16729987	16729987	+	Intron	DEL	C	-	-	rs57948110		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:16729987delC	uc001ayn.2	-						SPATA21_uc001ayl.1_Intron|SPATA21_uc010occ.1_Intron	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21								calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		tcttttttttctttttttttt	0.010													3	3	---	---	---	---	
ASAP3	55616	broad.mit.edu	37	1	23779454	23779454	+	Intron	DEL	G	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:23779454delG	uc001bha.2	-						ASAP3_uc010odz.1_Intron|ASAP3_uc010oea.1_Intron|ASAP3_uc001bhc.1_Intron	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH						regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						CTGAGCCTGCGGGGGGGGACT	0.612													4	2	---	---	---	---	
MYSM1	114803	broad.mit.edu	37	1	59148352	59148365	+	Intron	DEL	CTTTTCTTTTTTTT	-	-	rs72078164		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:59148352_59148365delCTTTTCTTTTTTTT	uc009wab.1	-						MYSM1_uc001czc.2_Intron	NM_001085487	NP_001078956	Q5VVJ2	MYSM1_HUMAN	Myb-like, SWIRM and MPN domains 1						histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin remodeling complex	DNA binding|histone binding|metal ion binding|metallopeptidase activity|transcription coactivator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(1)	1	all_cancers(7;9.36e-06)					CTCTAATGCGCTTTTCttttttttcttttctttt	0.131													9	4	---	---	---	---	
Unknown	0	broad.mit.edu	37	1	184081557	184081558	+	IGR	INS	-	GGAA	GGAA			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr1:184081557_184081558insGGAA								TSEN15 (38216 upstream) : C1orf21 (274592 downstream)																							GGGggaaggagggaaggaagga	0.223													5	4	---	---	---	---	
ZFAND2B	130617	broad.mit.edu	37	2	220071889	220071889	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr2:220071889delT	uc002vka.2	+						ZFAND2B_uc010zkt.1_Intron|ZFAND2B_uc010fwd.1_Intron|ZFAND2B_uc002vjy.1_Intron|ZFAND2B_uc002vjz.1_Intron|ZFAND2B_uc002vkb.1_5'Flank	NM_138802	NP_620157	Q8WV99	ZFN2B_HUMAN	zinc finger, AN1-type domain 2B							endoplasmic reticulum	protein binding|zinc ion binding				0		Renal(207;0.0915)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGGGGGGGGTGGTCAGCGGC	0.627													5	3	---	---	---	---	
C3orf75	54859	broad.mit.edu	37	3	47543489	47543489	+	Intron	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:47543489delA	uc003crk.2	-						C3orf75_uc003crj.2_Intron|C3orf75_uc011bba.1_Intron|C3orf75_uc003crl.1_Intron	NM_001031703	NP_001026873	Q0PNE2	CC075_HUMAN	transmembrane protein 103												0						GGTTAGAAAGAAAAGGCATGC	0.289													4	2	---	---	---	---	
RHOA	387	broad.mit.edu	37	3	49412694	49412694	+	Intron	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:49412694delA	uc003cwu.2	-						RHOA_uc010hku.2_Intron	NM_001664	NP_001655	P61586	RHOA_HUMAN	ras homolog gene family, member A precursor						axon guidance|interspecies interaction between organisms|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of axonogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of neuron differentiation|positive regulation of NF-kappaB import into nucleus|positive regulation of stress fiber assembly|regulation of cell migration|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|spindle assembly involved in mitosis	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity|myosin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;8.58e-05)|Kidney(197;0.0023)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)	Atorvastatin(DB01076)|Simvastatin(DB00641)	ctccgtctccaaaaaaaaaaa	0.149													5	3	---	---	---	---	
MYLK	4638	broad.mit.edu	37	3	123539511	123539512	+	Intron	INS	-	T	T	rs148359766	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:123539511_123539512insT	uc003ego.2	-						MYLK_uc003egp.2_Intron|MYLK_uc003egq.2_Intron|MYLK_uc003egr.2_Intron|MYLK_uc003egs.2_Intron|MYLK_uc003egu.1_Intron	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1						aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ccttccttccctccttccttcc	0.129													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	3	151297663	151297663	+	IGR	DEL	A	-	-	rs145031240	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:151297663delA								IGSF10 (121166 upstream) : AADACL2 (154041 downstream)																							gggaggaaggaaaggaaggaa	0.000													4	2	---	---	---	---	
GPR149	344758	broad.mit.edu	37	3	154147611	154147611	+	5'Flank	DEL	A	-	-	rs35893155		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:154147611delA	uc003faa.2	-							NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149							integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TTTCAAGCATAAAAAAAAAAA	0.348													5	4	---	---	---	---	
SDHAP2	727956	broad.mit.edu	37	3	195404870	195404870	+	Intron	DEL	C	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr3:195404870delC	uc003fuw.2	+						SDHAP2_uc011btc.1_Intron|SDHAP2_uc003fuv.2_Intron					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						ttttcatgtacctgtcaccca	0.035													2	10	---	---	---	---	
SLIT2	9353	broad.mit.edu	37	4	20544485	20544486	+	Intron	DEL	GC	-	-	rs68143710		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:20544485_20544486delGC	uc003gpr.1	+						SLIT2_uc003gps.1_Intron	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor						apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						gtgtgtgtgtgCGctataagat	0.104													4	2	---	---	---	---	
LIMCH1	22998	broad.mit.edu	37	4	41421683	41421683	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:41421683delT	uc003gvu.3	+						LIMCH1_uc003gvt.1_Intron|LIMCH1_uc003gvv.3_Intron|LIMCH1_uc003gvw.3_Intron|LIMCH1_uc003gvx.3_Intron|LIMCH1_uc003gwe.3_Intron|LIMCH1_uc003gvy.3_Intron	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a						actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						ccttccttccttccttccttc	0.000													3	3	---	---	---	---	
CEP135	9662	broad.mit.edu	37	4	56890992	56890992	+	Intron	DEL	T	-	-	rs113118558		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr4:56890992delT	uc003hbi.2	+						CEP135_uc003hbj.2_Intron	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4						centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					cagtgtatgcttttttttttt	0.000													6	3	---	---	---	---	
Unknown	0	broad.mit.edu	37	5	7990043	7990044	+	IGR	INS	-	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:7990043_7990044insT								MTRR (88810 upstream) : None (None downstream)																							tccttccttccttttttttttt	0.079													8	4	---	---	---	---	
FER	2241	broad.mit.edu	37	5	108133721	108133721	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:108133721delT	uc003kop.1	+						FER_uc011cve.1_Intron|FER_uc011cvf.1_Intron|FER_uc003koq.2_Intron|FER_uc011cvg.1_Intron	NM_005246	NP_005237	P16591	FER_HUMAN	fer (fps/fes related) tyrosine kinase						intracellular signal transduction|peptidyl-tyrosine phosphorylation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|kidney(1)	5		all_cancers(142;2.86e-06)|all_epithelial(76;9.81e-08)|Prostate(80;0.00972)|Lung NSC(167;0.039)|Ovarian(225;0.0448)|all_lung(232;0.0496)|Colorectal(57;0.0986)|Breast(839;0.152)		OV - Ovarian serous cystadenocarcinoma(64;6.77e-10)|Epithelial(69;4.13e-08)|COAD - Colon adenocarcinoma(37;0.0174)		ttcagtTGTGTTTTTTTTTTT	0.114													7	6	---	---	---	---	
SRP19	6728	broad.mit.edu	37	5	112198072	112198074	+	Intron	DEL	AGG	-	-	rs112093457		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:112198072_112198074delAGG	uc003kqc.2	+						SRP19_uc003kqb.1_Intron|SRP19_uc011cvu.1_Intron|SRP19_uc011cvv.1_Intron	NM_003135	NP_003126	P09132	SRP19_HUMAN	signal recognition particle 19kDa						response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		acgcagaaaaaggaggggttgaa	0.025													9	10	---	---	---	---	
RAPGEF6	51735	broad.mit.edu	37	5	130800138	130800138	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:130800138delT	uc003kvn.1	-						RAPGEF6_uc003kvp.1_Intron|RAPGEF6_uc003kvo.1_Intron|RAPGEF6_uc010jdi.1_Intron|RAPGEF6_uc010jdj.1_Intron|RAPGEF6_uc003kvq.2_Intron|RAPGEF6_uc003kvr.2_Intron|RAPGEF6_uc011cxe.1_Intron|RAPGEF6_uc010jdk.2_Intron	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide						Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AAATATATCCTTTTTTTTTTT	0.204													7	4	---	---	---	---	
ZCCHC10	54819	broad.mit.edu	37	5	132335788	132335789	+	Intron	INS	-	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr5:132335788_132335789insT	uc003kyh.2	-						ZCCHC10_uc003kyg.2_Intron|ZCCHC10_uc011cxl.1_Intron	NM_017665	NP_060135	Q8TBK6	ZCH10_HUMAN	zinc finger, CCHC domain containing 10								nucleic acid binding|zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTAGTATTACATGTTATCTATA	0.262													98	106	---	---	---	---	
FAM65B	9750	broad.mit.edu	37	6	24875814	24875815	+	Intron	INS	-	G	G	rs2255337	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:24875814_24875815insG	uc003neo.1	-						FAM65B_uc011djs.1_Intron|FAM65B_uc011dju.1_Intron|FAM65B_uc003nep.2_Intron|FAM65B_uc011djt.1_Intron	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1						cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						GGGAGGAGGCCGGGGGGCGGTT	0.436													3	5	---	---	---	---	
TEAD3	7005	broad.mit.edu	37	6	35445212	35445212	+	Intron	DEL	C	-	-	rs3215481		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:35445212delC	uc003oku.3	-						TEAD3_uc003okt.2_Intron|TEAD3_uc010jvx.2_Intron	NM_003214	NP_003205	Q99594	TEAD3_HUMAN	TEA domain family member 3						female pregnancy|hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCTGGCCCAGCCCCTCTTCCA	0.577													5	3	---	---	---	---	
TFAP2D	83741	broad.mit.edu	37	6	50683457	50683464	+	Intron	DEL	CTCTCTCA	-	-	rs3835216	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr6:50683457_50683464delCTCTCTCA	uc003paf.2	+						TFAP2D_uc011dwt.1_Intron	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1								DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					ctctctctctctctctcacacacacaca	0.322													8	4	---	---	---	---	
Unknown	0	broad.mit.edu	37	7	37176	37177	+	IGR	DEL	AC	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:37176_37177delAC								None (None upstream) : FAM20C (155792 downstream)																							GGCTGGAGGAACAGTGACCCCA	0.441													4	2	---	---	---	---	
RNF216L	441191	broad.mit.edu	37	7	5015788	5015788	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:5015788delT	uc003snp.3	+						RNF216L_uc003snq.3_Intron|RNF216L_uc010ksr.2_Intron|RNF216L_uc011jwe.1_Intron	NR_023384				Homo sapiens cDNA FLJ42538 fis, clone BRACE3004113.												0						GTTTGTGTGGTTTTTTTTTTT	0.323													4	3	---	---	---	---	
RFC2	5982	broad.mit.edu	37	7	73649642	73649643	+	Intron	INS	-	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:73649642_73649643insA	uc003uaj.2	-						RFC2_uc011kfa.1_Intron|RFC2_uc003uak.2_Intron|RFC2_uc010lbp.2_Intron|RFC2_uc003ual.2_Intron	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1						cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						gctgggattacaggcatgagcc	0.000													4	2	---	---	---	---	
SRRM3	222183	broad.mit.edu	37	7	75860063	75860066	+	Intron	DEL	TTAC	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:75860063_75860066delTTAC	uc010ldi.2	+							NM_001110199	NP_001103669			serine/arginine repetitive matrix 3												0						ATAAtttcttttacttactttttt	0.015													4	4	---	---	---	---	
Unknown	0	broad.mit.edu	37	7	100396925	100396932	+	IGR	DEL	CTCCCTCT	-	-	rs67490275		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:100396925_100396932delCTCCCTCT								ZAN (1507 upstream) : EPHB4 (3255 downstream)																							ccctccctccctccctctctctctctct	0.000													6	3	---	---	---	---	
DNAJC2	27000	broad.mit.edu	37	7	102963381	102963381	+	Intron	DEL	T	-	-	rs75138416		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr7:102963381delT	uc003vbo.2	-						PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Intron|DNAJC2_uc010lix.2_Intron|DNAJC2_uc003vbp.2_Intron	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2						'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TAAACAATGAttttttttttt	0.129													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	8	11496786	11496801	+	IGR	DEL	TCCTTCCTTCCTTCCC	-	-	rs56314963	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:11496786_11496801delTCCTTCCTTCCTTCCC								BLK (74679 upstream) : GATA4 (37667 downstream)																							cttccttccttccttccttccttccctccttccttt	0.074													2	7	---	---	---	---	
Unknown	0	broad.mit.edu	37	8	96977958	96977958	+	IGR	DEL	G	-	-	rs35277274		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:96977958delG								C8orf37 (696521 upstream) : GDF6 (176602 downstream)																							aaggaaggaagggaaggaagg	0.119													4	5	---	---	---	---	
Unknown	0	broad.mit.edu	37	8	123308737	123308738	+	IGR	INS	-	GAAA	GAAA	rs34929228		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr8:123308737_123308738insGAAA								HAS2AS (651804 upstream) : ZHX2 (485163 downstream)																							aaggaaggaaggaaagaaagaa	0.020													5	3	---	---	---	---	
MPDZ	8777	broad.mit.edu	37	9	13221425	13221427	+	In_Frame_Del	DEL	TCC	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:13221425_13221427delTCC	uc010mia.1	-	6	877_879	c.820_822delGGA	c.(820-822)GGAdel	p.G274del	MPDZ_uc010mhy.2_In_Frame_Del_p.G274del|MPDZ_uc010mhz.2_In_Frame_Del_p.G274del|MPDZ_uc011lmn.1_In_Frame_Del_p.G274del|MPDZ_uc003zlb.3_In_Frame_Del_p.G274del	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	274	PDZ 2.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CAGTTGCTTTTCCTCCTATGATG	0.374													68	36	---	---	---	---	
Unknown	0	broad.mit.edu	37	9	33617692	33617703	+	5'Flank	DEL	GGATGTAACACG	-	-	rs113178723		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:33617692_33617703delGGATGTAACACG	uc003ztf.1	+											Homo sapiens patient CS-1 clone 1 T cell receptor beta chain CDR3 (TCRB) mRNA, partial cds.																		GCAGAGAGATGGATGTAACACGGGTCATGAGC	0.349											OREG0019139	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5	---	---	---	---	
LOC653501	653501	broad.mit.edu	37	9	41606913	41606913	+	Intron	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:41606913delA	uc010mmp.2	-							NR_003528				RecName: Full=Zinc finger protein 658B;												0						TCATGTGCCTAAAAAAAAAAT	0.254													5	3	---	---	---	---	
Unknown	0	broad.mit.edu	37	9	69876385	69876386	+	IGR	INS	-	TCT	TCT			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:69876385_69876386insTCT								LOC100133920 (211436 upstream) : FOXD4L5 (299323 downstream)																							TTCTTCTCTTCTCTTCTTGTTT	0.277													4	2	---	---	---	---	
COL5A1	1289	broad.mit.edu	37	9	137618916	137618917	+	Intron	INS	-	GGATGGATGGAC	GGATGGATGGAC	rs139171326	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr9:137618916_137618917insGGATGGATGGAC	uc004cfe.2	+							NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein						axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		gatggatggatggatggatggG	0.238													7	4	---	---	---	---	
Unknown	0	broad.mit.edu	37	11	64011615	64011616	+	IGR	DEL	TG	-	-	rs150253900		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:64011615_64011616delTG								FKBP2 (9 upstream) : PPP1R14B (337 downstream)																							GGAGTAAGCCTGTGTGTGTTTG	0.480													6	5	---	---	---	---	
SHANK2	22941	broad.mit.edu	37	11	70445921	70445922	+	Intron	INS	-	GAAG	GAAG	rs139806999	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr11:70445921_70445922insGAAG	uc001oqc.2	-						SHANK2_uc010rqn.1_Intron|SHANK2_uc001opz.2_Intron|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2						intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			aagaagagggagaaggaaggaa	0.000													5	4	---	---	---	---	
CD69	969	broad.mit.edu	37	12	9905949	9905954	+	3'UTR	DEL	CCAAGA	-	-	rs112529498		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:9905949_9905954delCCAAGA	uc001qwk.2	-	5						NM_001781	NP_001772	Q07108	CD69_HUMAN	CD69 molecule							integral to plasma membrane	sugar binding|transmembrane receptor activity				0						AAGAAAATTCCCAAGACACTATAAAA	0.388													3	4	---	---	---	---	
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs66529359		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:53069236_53069256delTAGCTGCTACCTCCGGAGCCA	uc001sau.1	-	9	1715_1735	c.1656_1676delTGGCTCCGGAGGTAGCAGCTA	c.(1654-1677)TATGGCTCCGGAGGTAGCAGCTAC>TAC	p.552_559YGSGGSSY>Y	KRT1_uc001sav.1_Splice_Site_p.G556_splice	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	552_559	Gly/Ser-rich.|Tail.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						tccggagccgtagctgctacctccggagccatagctgccac	0.000													6	3	---	---	---	---	
HOXC12	3228	broad.mit.edu	37	12	54348568	54348568	+	5'Flank	DEL	G	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:54348568delG	uc010soq.1	+							NM_173860	NP_776272	P31275	HXC12_HUMAN	homeobox C12						multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						ATGGGATGGTGGGGGGGGGGG	0.592													3	3	---	---	---	---	
PAN2	9924	broad.mit.edu	37	12	56715635	56715635	+	Intron	DEL	A	-	-	rs76295934		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:56715635delA	uc001skx.2	-						PAN2_uc001skw.2_Intron|PAN2_uc001skz.2_Intron|PAN2_uc001sky.2_Intron	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog						nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						actgcatctcaaaaaaaaaaa	0.045													3	3	---	---	---	---	
ANKRD13A	88455	broad.mit.edu	37	12	110473897	110473898	+	Intron	INS	-	G	G			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr12:110473897_110473898insG	uc001tpx.2	+						ANKRD13A_uc010sxw.1_Intron|ANKRD13A_uc001tpy.2_Intron|ANKRD13A_uc001tpz.2_Intron|ANKRD13A_uc001tqa.2_Intron	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13												0						CCTCCCACTTAGGTGTTGTTTT	0.426													4	2	---	---	---	---	
LHFP	10186	broad.mit.edu	37	13	39943736	39943737	+	Intron	INS	-	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:39943736_39943737insT	uc001uxf.2	-							NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor							integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		tccttccttcctccctctctcc	0.243			T	HMGA2	lipoma								5	4	---	---	---	---	
CDADC1	81602	broad.mit.edu	37	13	49830214	49830215	+	Intron	INS	-	A	A	rs35925057		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:49830214_49830215insA	uc001vcu.2	+						CDADC1_uc001vcs.1_Intron|CDADC1_uc001vct.1_Intron|CDADC1_uc010tgk.1_Intron|CDADC1_uc001vcv.2_Intron	NM_030911	NP_112173	Q9BWV3	CDAC1_HUMAN	cytidine and dCMP deaminase domain containing 1								hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		Lung NSC(96;0.000705)|Breast(56;0.0011)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;1.06e-08)|COAD - Colon adenocarcinoma(199;0.216)		TCCTTTTTTTTAAAAAAAAAAG	0.262													2	5	---	---	---	---	
Unknown	0	broad.mit.edu	37	13	74993489	74993492	+	5'Flank	DEL	TCCC	-	-	rs72439247		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr13:74993489_74993492delTCCC	uc001vjj.1	-											Homo sapiens cDNA FLJ35839 fis, clone TESTI2006659.																		ccttcttttttccctccctccctc	0.000													3	3	---	---	---	---	
SDCCAG1	9147	broad.mit.edu	37	14	50122177	50122178	+	Intron	DEL	AC	-	-	rs139602604		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr14:50122177_50122178delAC	uc010anj.1	-						POLE2_uc010ann.2_Intron|POLE2_uc001wwu.2_Intron|POLE2_uc001wwv.2_Intron|POLE2_uc010ano.2_Intron	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1							cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		ATGACTATAAacacacacacac	0.089													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	15	20148741	20148742	+	IGR	INS	-	T	T	rs141152913	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:20148741_20148742insT								None (None upstream) : GOLGA6L6 (588352 downstream)																							GCCCCCACCCCGCCTCGGCTTT	0.653													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	15	30905410	30905411	+	IGR	INS	-	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:30905410_30905411insC								FAM7A2 (12510 upstream) : ARHGAP11B (11286 downstream)																							TGAGCCTGACTCCCCCTGCACC	0.604													3	4	---	---	---	---	
CAPN3	825	broad.mit.edu	37	15	42652566	42652566	+	Intron	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:42652566delA	uc001zpn.1	+						CAPN3_uc001zpk.1_Intron|CAPN3_uc001zpl.1_Intron|CAPN3_uc010udf.1_Intron|CAPN3_uc010udg.1_Intron|CAPN3_uc001zpo.1_Intron|CAPN3_uc001zpp.1_Intron	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a						muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		TTTCTCTCTGAAAAAAAAAAA	0.383													4	2	---	---	---	---	
USP3	9960	broad.mit.edu	37	15	63829052	63829053	+	Intron	INS	-	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:63829052_63829053insA	uc002amf.2	+						USP3_uc010uii.1_Intron|USP3_uc002amg.2_Intron|USP3_uc002amh.2_Intron|USP3_uc010uij.1_Intron|USP3_uc010uik.1_Intron|USP3_uc010bgs.2_Intron|USP3_uc002ami.2_5'Flank	NM_006537	NP_006528	Q9Y6I4	UBP3_HUMAN	ubiquitin thiolesterase 3						DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(80;0.0187)		gactccgtctcaaaaaaaaaaa	0.099													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	15	89504351	89504351	+	IGR	DEL	A	-	-	rs71462472		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr15:89504351delA								MFGE8 (47688 upstream) : ABHD2 (127030 downstream)																							CATTGGTCTGaaaaaaaaaaa	0.239													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	16	52342530	52342531	+	IGR	DEL	AC	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:52342530_52342531delAC								None (None upstream) : TOX3 (129387 downstream)																							acacacacatacacacacacac	0.297													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	16	74419892	74419892	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr16:74419892delT	uc010vmt.1	+											RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		cctttctctcttttttttttt	0.169													9	5	---	---	---	---	
ZFP3	124961	broad.mit.edu	37	17	4996471	4996472	+	3'UTR	DEL	TT	-	-	rs72184758		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:4996471_4996472delTT	uc002gaq.2	+	2						NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATGAGGCACtttttttttttt	0.203													8	5	---	---	---	---	
CCDC144C	348254	broad.mit.edu	37	17	20254234	20254235	+	Intron	INS	-	T	T			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:20254234_20254235insT	uc010cqy.1	+							NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						AAGAGGAATTGTTTTTTTTTTT	0.248													4	2	---	---	---	---	
NXPH3	11248	broad.mit.edu	37	17	47655768	47655768	+	Intron	DEL	T	-	-	rs67095119		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:47655768delT	uc002ipa.2	+						NXPH3_uc010wlw.1_Intron	NM_007225	NP_009156	O95157	NXPH3_HUMAN	neurexophilin 3 precursor						neuropeptide signaling pathway	extracellular region				pancreas(1)|skin(1)	2	all_cancers(4;7.45e-14)|Breast(4;1.08e-27)|all_epithelial(4;2.27e-17)					GGGGGGGGGGTGACCCAACTG	0.527													4	4	---	---	---	---	
VEZF1	7716	broad.mit.edu	37	17	56056915	56056916	+	Intron	INS	-	A	A			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:56056915_56056916insA	uc002ivf.1	-						VEZF1_uc010dcn.1_Intron	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161						cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						AAAAAACCATCAAAAAAAAAAA	0.238													4	2	---	---	---	---	
ENPP7	339221	broad.mit.edu	37	17	77710334	77710335	+	Intron	INS	-	CA	CA	rs143329522	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:77710334_77710335insCA	uc002jxa.2	+							NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase						negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			TGTGTGATAGGCgtgtgtgtgt	0.441													4	2	---	---	---	---	
CCDC57	284001	broad.mit.edu	37	17	80152185	80152186	+	Intron	INS	-	T	T	rs140430398		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr17:80152185_80152186insT	uc002kdz.1	-						CCDC57_uc002kdx.1_Intron	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57											ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			GACTCAATGACttttttttttt	0.193													6	4	---	---	---	---	
SERPINB5	5268	broad.mit.edu	37	18	61166268	61166271	+	Intron	DEL	GCGC	-	-	rs71821111		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr18:61166268_61166271delGCGC	uc002liz.3	+							NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade						cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						gtgtgtgtgtgcgcgcgtgtgtgt	0.108													4	2	---	---	---	---	
HNRNPM	4670	broad.mit.edu	37	19	8520629	8520630	+	Intron	INS	-	T	T	rs151081584	by1000genomes	TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr19:8520629_8520630insT	uc010dwe.2	+						HNRNPM_uc010dwc.1_Intron|HNRNPM_uc010xke.1_Intron|HNRNPM_uc010dwd.2_Intron	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M						alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						tttgttttgtgttttttttttg	0.366													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	20	42043560	42043563	+	IGR	DEL	GAAG	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr20:42043560_42043563delGAAG								PTPRT (225003 upstream) : SFRS6 (42941 downstream)																							aaaaaaaaaagaaggaaggaagga	0.005													4	7	---	---	---	---	
COL6A1	1291	broad.mit.edu	37	21	47410424	47410424	+	Intron	DEL	C	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr21:47410424delC	uc002zhu.1	+							NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor						axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	gtgaaggtgacccggggaggg	0.104													3	5	---	---	---	---	
MYO18B	84700	broad.mit.edu	37	22	26413051	26413054	+	Intron	DEL	CTCC	-	-	rs144669857		TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chr22:26413051_26413054delCTCC	uc003abz.1	+						MYO18B_uc003aca.1_Intron|MYO18B_uc010guy.1_Intron|MYO18B_uc010guz.1_Intron|MYO18B_uc011aka.1_Intron|MYO18B_uc011akb.1_Intron|MYO18B_uc010gva.1_Intron	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB							nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ctctgtgcctctccctccctccct	0.078													6	3	---	---	---	---	
CD99	4267	broad.mit.edu	37	X	2637439	2637440	+	Intron	INS	-	C	C			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:2637439_2637440insC	uc004cqm.2	+						CD99_uc010nda.2_Intron|CD99_uc004cqn.2_Intron|CD99_uc004cqo.2_Intron	NM_002414	NP_002405	P14209	CD99_HUMAN	CD99 antigen isoform a precursor						cell adhesion	cytoplasm|integral to plasma membrane				skin(1)	1						tctctctctctccccactgcct	0.183													7	7	---	---	---	---	
FAM120C	54954	broad.mit.edu	37	X	54099867	54099867	+	Intron	DEL	T	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:54099867delT	uc004dsz.3	-						FAM120C_uc011moh.1_Intron	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954											ovary(1)|central_nervous_system(1)	2						TAGTACAATCttttttttttt	0.224													4	2	---	---	---	---	
SYTL4	94121	broad.mit.edu	37	X	99936088	99936088	+	Intron	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:99936088delA	uc004egd.3	-						SYTL4_uc004egc.2_5'Flank|SYTL4_uc010nnb.2_Intron|SYTL4_uc010nnc.2_Intron|SYTL4_uc004ege.3_Intron|SYTL4_uc004egf.3_Intron	NM_080737	NP_542775	Q96C24	SYTL4_HUMAN	synaptotagmin-like 4						exocytosis|intracellular protein transport	extrinsic to membrane|plasma membrane|synaptic vesicle|transport vesicle membrane	neurexin binding|phospholipid binding|Rab GTPase binding|transporter activity|zinc ion binding			ovary(2)	2					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTCCTTAGTAAAGGAATCTC	0.468													3	5	---	---	---	---	
LHFPL1	340596	broad.mit.edu	37	X	111874741	111874741	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B0-5077-01A-01D-1462-08	TCGA-B0-5077-11A-01D-1462-08									Somatic	Phase_I	Capture				Illumina GAIIx	g.chrX:111874741delA	uc004epq.2	-	4	903	c.570delT	c.(568-570)GCTfs	p.A190fs	LHFPL1_uc004epp.2_Frame_Shift_Del_p.A213fs|LHFPL1_uc010nqa.2_RNA|LHFPL1_uc010nqb.2_Frame_Shift_Del_p.A157fs	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	190						integral to membrane					0						GGTTTCTTCCAGCAAAGCAAG	0.507													48	62	---	---	---	---	
