Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA1	19	hgsc.bcm.edu	37	9	107578543	107578543	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID5B	84159	hgsc.bcm.edu	37	10	63661481	63661481	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCL6	604	hgsc.bcm.edu	37	3	187447718	187447718	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf14	81626	hgsc.bcm.edu	37	1	182869245	182869245	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf173	127254	hgsc.bcm.edu	37	1	75102070	75102070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPE	1062	hgsc.bcm.edu	37	4	104115562	104115562	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHRM5	1133	hgsc.bcm.edu	37	15	34356453	34356453	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL9A2	1298	hgsc.bcm.edu	37	1	40776390	40776390	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSF2RB	1439	hgsc.bcm.edu	37	22	37334375	37334375	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH10	196385	hgsc.bcm.edu	37	12	124416606	124416606	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
F7	2155	hgsc.bcm.edu	37	13	113769996	113769996	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM178A	55719	hgsc.bcm.edu	37	10	102676494	102676494	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FMR1	2332	hgsc.bcm.edu	37	X	147030317	147030317	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KSR1	8844	hgsc.bcm.edu	37	17	25919598	25919598	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LALBA	3906	hgsc.bcm.edu	37	12	48961740	48961740	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LASS3	204219	hgsc.bcm.edu	37	15	101031104	101031104	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MALT1	10892	hgsc.bcm.edu	37	18	56414818	56414818	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MEN1	4221	hgsc.bcm.edu	37	11	64577153	64577153	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MICAL2	9645	hgsc.bcm.edu	37	11	12225972	12225972	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYT1L	23040	hgsc.bcm.edu	37	2	1921063	1921063	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDUFV2	4729	hgsc.bcm.edu	37	18	9117867	9117867	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NETO2	81831	hgsc.bcm.edu	37	16	47165915	47165915	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEURL4	84461	hgsc.bcm.edu	37	17	7224890	7224890	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OBSCN	84033	hgsc.bcm.edu	37	1	228511298	228511298	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR10G3	26533	hgsc.bcm.edu	37	14	22038054	22038054	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHA6	22874	hgsc.bcm.edu	37	1	204228767	204228767	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCAPER	49855	hgsc.bcm.edu	37	15	77096926	77096926	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN2A	6326	hgsc.bcm.edu	37	2	166152464	166152464	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETX	23064	hgsc.bcm.edu	37	9	135202859	135202859	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFPQ	6421	hgsc.bcm.edu	37	1	35657116	35657116	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC6A20	54716	hgsc.bcm.edu	37	3	45817396	45817396	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD9	57519	hgsc.bcm.edu	37	15	42961446	42961446	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D2	55357	hgsc.bcm.edu	37	9	100991264	100991264	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VEZT	55591	hgsc.bcm.edu	37	12	95668544	95668544	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS13A	23230	hgsc.bcm.edu	37	9	79933403	79933403	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4169-01A-02D-1366-10	TCGA-BP-4169-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
