Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABHD12B	145447	hgsc.bcm.edu	37	14	51355621	51355621	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ACAP2	23527	hgsc.bcm.edu	37	3	195029539	195029539	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAM29	11086	hgsc.bcm.edu	37	4	175896773	175896773	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AGAP8	728404	hgsc.bcm.edu	37	10	51225539	51225543	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	TCCTG	TCCTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANK1	286	hgsc.bcm.edu	37	8	41554280	41554280	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A2	23400	hgsc.bcm.edu	37	1	17332210	17332210	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAT2L2	23215	hgsc.bcm.edu	37	1	171492579	171492579	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf17	84103	hgsc.bcm.edu	37	4	100443782	100443782	+	Missense_Mutation	SNP	T	T	C	rs35156523	unknown	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CALU	813	hgsc.bcm.edu	37	7	128407567	128407567	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CELSR1	9620	hgsc.bcm.edu	37	22	46931447	46931447	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CIT	11113	hgsc.bcm.edu	37	12	120241151	120241151	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTN1	1272	hgsc.bcm.edu	37	12	41330588	41330588	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYP2F1	1572	hgsc.bcm.edu	37	19	41631417	41631417	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYP4F11	57834	hgsc.bcm.edu	37	19	16032908	16032908	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DERA	51071	hgsc.bcm.edu	37	12	16115810	16115810	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH8	1769	hgsc.bcm.edu	37	6	38875852	38875852	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERBB4	2066	hgsc.bcm.edu	37	2	212248739	212248739	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EVC	2121	hgsc.bcm.edu	37	4	5803737	5803737	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM184B	27146	hgsc.bcm.edu	37	4	17706693	17706693	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM40A	85369	hgsc.bcm.edu	37	1	110584374	110584374	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO21	23014	hgsc.bcm.edu	37	12	117624333	117624333	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FIBCD1	84929	hgsc.bcm.edu	37	9	133779548	133779548	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FNIP2	57600	hgsc.bcm.edu	37	4	159772550	159772550	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRA3	2556	hgsc.bcm.edu	37	X	151336860	151336860	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRR2	2570	hgsc.bcm.edu	37	6	89967495	89967496	+	Frame_Shift_Del	DEL	CC	CC	-	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GALNT14	79623	hgsc.bcm.edu	37	2	31133776	31133776	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HAVCR1	26762	hgsc.bcm.edu	37	5	156482480	156482480	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HIVEP1	3096	hgsc.bcm.edu	37	6	12164390	12164390	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFT57	55081	hgsc.bcm.edu	37	3	107884289	107884289	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGSF10	285313	hgsc.bcm.edu	37	3	151166818	151166818	+	Silent	SNP	A	A	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL18R1	8809	hgsc.bcm.edu	37	2	103013146	103013146	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
INCA1	388324	hgsc.bcm.edu	37	17	4897690	4897690	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KBTBD3	143879	hgsc.bcm.edu	37	11	105924878	105924878	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCTD16	57528	hgsc.bcm.edu	37	5	143853311	143853311	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1211	57482	hgsc.bcm.edu	37	4	57173742	57173742	+	Silent	SNP	C	C	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLF9	687	hgsc.bcm.edu	37	9	73027905	73027905	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LATS1	9113	hgsc.bcm.edu	37	6	150004810	150004810	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC8A	56262	hgsc.bcm.edu	37	9	131671458	131671458	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGEF1	64110	hgsc.bcm.edu	37	3	184429247	184429247	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MDC1	9656	hgsc.bcm.edu	37	6	30671868	30671868	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MIA	8190	hgsc.bcm.edu	37	19	41281481	41281481	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO15A	51168	hgsc.bcm.edu	37	17	18023659	18023659	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRXN3	9369	hgsc.bcm.edu	37	14	79175641	79175641	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OPN5	221391	hgsc.bcm.edu	37	6	47763217	47763217	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR3A2	4995	hgsc.bcm.edu	37	17	3181430	3181430	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP9	83666	hgsc.bcm.edu	37	3	122259432	122259432	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PGAP3	93210	hgsc.bcm.edu	37	17	37829863	37829863	+	Missense_Mutation	SNP	G	G	A	rs75557131	unknown	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3CG	5294	hgsc.bcm.edu	37	7	106513313	106513313	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN4A	6329	hgsc.bcm.edu	37	17	62018530	62018530	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SENP6	26054	hgsc.bcm.edu	37	6	76369110	76369110	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC44A2	57153	hgsc.bcm.edu	37	19	10746190	10746190	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSPO	23145	hgsc.bcm.edu	37	7	149509002	149509002	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STON2	85439	hgsc.bcm.edu	37	14	81862341	81862341	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYCP2	10388	hgsc.bcm.edu	37	20	58489239	58489239	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TFF1	7031	hgsc.bcm.edu	37	21	43783445	43783445	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIAM1	7074	hgsc.bcm.edu	37	21	32559389	32559389	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIMM44	10469	hgsc.bcm.edu	37	19	8006071	8006071	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBR2	23304	hgsc.bcm.edu	37	6	42562014	42562014	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UHRF1	29128	hgsc.bcm.edu	37	19	4911025	4911025	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
URB1	9875	hgsc.bcm.edu	37	21	33734295	33734295	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UTP3	57050	hgsc.bcm.edu	37	4	71554660	71554660	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10188264	10188264	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XIRP2	129446	hgsc.bcm.edu	37	2	168104248	168104248	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF280D	54816	hgsc.bcm.edu	37	15	56993171	56993171	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF530	348327	hgsc.bcm.edu	37	19	58118460	58118460	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF683	257101	hgsc.bcm.edu	37	1	26689555	26689555	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4325-01A-02D-1366-10	TCGA-BP-4325-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
