Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABL2	27	hgsc.bcm.edu	37	1	179100500	179100500	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AFF2	2334	hgsc.bcm.edu	37	X	148055112	148055112	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AFP	174	hgsc.bcm.edu	37	4	74316336	74316336	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD30B	374860	hgsc.bcm.edu	37	18	14780019	14780019	+	Missense_Mutation	SNP	G	G	T	rs72873710	unknown	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP13A4	84239	hgsc.bcm.edu	37	3	193151706	193151706	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BSN	8927	hgsc.bcm.edu	37	3	49694177	49694177	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C12orf63	374467	hgsc.bcm.edu	37	12	97137566	97137566	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCKBR	887	hgsc.bcm.edu	37	11	6292261	6292261	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNGA3	1261	hgsc.bcm.edu	37	2	99013536	99013536	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COG1	9382	hgsc.bcm.edu	37	17	71193163	71193163	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLGAP4	22839	hgsc.bcm.edu	37	20	35060891	35060891	+	Silent	SNP	C	C	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH8	1769	hgsc.bcm.edu	37	6	38862582	38862582	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DST	667	hgsc.bcm.edu	37	6	56433296	56433296	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRA3	2556	hgsc.bcm.edu	37	X	151376587	151376587	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GXYLT1	283464	hgsc.bcm.edu	37	12	42491289	42491289	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HGC6.3	100128124	hgsc.bcm.edu	37	6	168376866	168376866	+	Missense_Mutation	SNP	T	T	C	rs71305249	unknown	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPR3	3710	hgsc.bcm.edu	37	6	33626490	33626490	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP4K1	11184	hgsc.bcm.edu	37	19	39086336	39086336	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9005204	9005204	+	Silent	SNP	G	G	T	rs75792671	unknown	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF3	84224	hgsc.bcm.edu	37	1	21798236	21798236	+	Silent	SNP	A	A	G	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBPF3	84224	hgsc.bcm.edu	37	1	21808126	21808126	+	Silent	SNP	G	G	A	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOTCH4	4855	hgsc.bcm.edu	37	6	32188642	32188642	+	Silent	SNP	T	T	C	rs114929764	unknown	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ODF1	4956	hgsc.bcm.edu	37	8	103573001	103573001	+	Silent	SNP	C	C	G	rs3018445	unknown	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAPPA2	60676	hgsc.bcm.edu	37	1	176740168	176740168	+	Silent	SNP	T	T	C	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52620646	52620646	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCAI	286205	hgsc.bcm.edu	37	9	127789090	127789090	+	Splice_Site	SNP	C	C	G	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEC23IP	11196	hgsc.bcm.edu	37	10	121658082	121658082	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SERPINA11	256394	hgsc.bcm.edu	37	14	94909003	94909003	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC39A7	7922	hgsc.bcm.edu	37	6	33171434	33171434	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF624	57547	hgsc.bcm.edu	37	17	16527328	16527328	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CJ-4884-01A-01D-1373-10	TCGA-CJ-4884-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
