Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AHR	196	hgsc.bcm.edu	37	7	17378783	17378783	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKFY1	51479	hgsc.bcm.edu	37	17	4083152	4083152	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARFGEF1	10565	hgsc.bcm.edu	37	8	68128844	68128844	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGEF17	9828	hgsc.bcm.edu	37	11	73068089	73068089	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BLK	640	hgsc.bcm.edu	37	8	11415475	11415475	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C16orf78	123970	hgsc.bcm.edu	37	16	49412406	49412406	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1QA	712	hgsc.bcm.edu	37	1	22965443	22965443	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf17	84103	hgsc.bcm.edu	37	4	100443784	100443784	+	Silent	SNP	C	C	G	rs61732380	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC36	339834	hgsc.bcm.edu	37	3	49293580	49293580	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC74B	91409	hgsc.bcm.edu	37	2	130897218	130897218	+	Silent	SNP	T	T	C	rs13006246	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH11	1009	hgsc.bcm.edu	37	16	65022084	65022084	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH19	28513	hgsc.bcm.edu	37	18	64172144	64172144	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHST8	64377	hgsc.bcm.edu	37	19	34180263	34180263	+	Silent	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNPY2	10330	hgsc.bcm.edu	37	12	56705186	56705186	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CT47B1	643311	hgsc.bcm.edu	37	X	120008791	120008791	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CT47B1	643311	hgsc.bcm.edu	37	X	120009118	120009118	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYFIP1	23191	hgsc.bcm.edu	37	15	22926030	22926030	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX36	170506	hgsc.bcm.edu	37	3	154018902	154018902	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPYSL3	1809	hgsc.bcm.edu	37	5	146780285	146780285	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ERVFRDE1	405754	hgsc.bcm.edu	37	6	11105465	11105465	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EXPH5	23086	hgsc.bcm.edu	37	11	108385374	108385374	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
F12	2161	hgsc.bcm.edu	37	5	176832137	176832137	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FKBP15	23307	hgsc.bcm.edu	37	9	115931605	115931605	+	Silent	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GALNT2	2590	hgsc.bcm.edu	37	1	230338993	230338993	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GDPD5	81544	hgsc.bcm.edu	37	11	75188686	75188686	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRAMD1B	57476	hgsc.bcm.edu	37	11	123489493	123489493	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GXYLT1	283464	hgsc.bcm.edu	37	12	42491289	42491289	+	Silent	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSPA8	3312	hgsc.bcm.edu	37	11	122928453	122928453	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGF2BP2	10644	hgsc.bcm.edu	37	3	185376129	185376129	+	Silent	SNP	A	A	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL22RA1	58985	hgsc.bcm.edu	37	1	24460780	24460780	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ISLR	3671	hgsc.bcm.edu	37	15	74467763	74467763	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITLN1	55600	hgsc.bcm.edu	37	1	160853223	160853223	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPR3	3710	hgsc.bcm.edu	37	6	33635679	33635679	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JUNB	3726	hgsc.bcm.edu	37	19	12903618	12903618	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0907	22889	hgsc.bcm.edu	37	1	155887391	155887391	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF4A	24137	hgsc.bcm.edu	37	X	69561758	69561758	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276827	71276827	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGEF1	64110	hgsc.bcm.edu	37	3	184429133	184429134	+	In_Frame_Ins	INS	-	-	TCC	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MDC1	9656	hgsc.bcm.edu	37	6	30672175	30672175	+	Silent	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MPHOSPH6	10200	hgsc.bcm.edu	37	16	82203742	82203742	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTRR	4552	hgsc.bcm.edu	37	5	7875376	7875376	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC13	56667	hgsc.bcm.edu	37	3	124632487	124632487	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP210	23225	hgsc.bcm.edu	37	3	13415333	13415333	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OAS2	4939	hgsc.bcm.edu	37	12	113448226	113448226	+	Silent	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR5B3	441608	hgsc.bcm.edu	37	11	58170027	58170027	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC1L	80336	hgsc.bcm.edu	37	20	43559156	43559156	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC3	5042	hgsc.bcm.edu	37	13	25670868	25670868	+	Missense_Mutation	SNP	G	G	A	rs114443809	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLXNA3	55558	hgsc.bcm.edu	37	X	153692792	153692792	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POU6F2	11281	hgsc.bcm.edu	37	7	39472854	39472854	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPARGC1A	10891	hgsc.bcm.edu	37	4	23815962	23815962	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RECQL4	9401	hgsc.bcm.edu	37	8	145740784	145740784	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF217	154214	hgsc.bcm.edu	37	6	125366368	125366368	+	Silent	SNP	C	C	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIGLEC8	27181	hgsc.bcm.edu	37	19	51955677	51955677	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIPA1L2	57568	hgsc.bcm.edu	37	1	232581296	232581296	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A20	440044	hgsc.bcm.edu	37	11	64985140	64985140	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC48A1	55652	hgsc.bcm.edu	37	12	48172917	48172917	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC9A9	285195	hgsc.bcm.edu	37	3	142985575	142985575	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SUPT6H	6830	hgsc.bcm.edu	37	17	27011637	27011637	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAS2R19	259294	hgsc.bcm.edu	37	12	11174390	11174390	+	Missense_Mutation	SNP	G	G	A	rs74992161	unknown	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
THSD1	55901	hgsc.bcm.edu	37	13	52952681	52952681	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMCO7	79613	hgsc.bcm.edu	37	16	68877598	68877598	+	Silent	SNP	G	G	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM70	54968	hgsc.bcm.edu	37	8	74893388	74893388	+	Splice_Site	SNP	A	A	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM29	23650	hgsc.bcm.edu	37	11	119996570	119996570	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF83	55769	hgsc.bcm.edu	37	19	53117118	53117118	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-CZ-4854-01A-01D-1373-10	TCGA-CZ-4854-11A-01D-1373-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
