# Created: Sat Aug 25 15:28:43 EDT 2012 by cgaadm_deadline
# Job: 156473    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: MutationPackagerCoverage urn:lsid:broadinstitute.org:cancer.genome.analysis:00492:12
# Parameters: 
#    samplestamp = file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.STAD.2012_08_25__00_00_10.samplestamp.txt
#    annotationids = tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf,tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf,tracerel__solid_dna__bcm_edu__Level_2__Mutation_Calling__maf
#    doNotCreateManifest = -m
#    doNotCreateProperties = -p
#    datapathsfile = datapathsfile.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2060941376708669987.att_datapathsfile.input.tsv
#    outdir = .
#    infile1 = infile1.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis6084280138923718169.att_infile1.input.tsv
