Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AHDC1	27245	genome.wustl.edu	37	1	27876673	27876673	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27876673	27876673	T	G	SNP	AHDC1	NM_001029882	human	genbank	57_37b	-1	validated	missense	c.1954	p.T652P	1.000	NULL	HMMSmart_AT_hook,HMMPfam_AT_hook	-	no_errors
AP1G2	8906	genome.wustl.edu	37	14	24035597	24035597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24035597	24035597	C	T	SNP	AP1G2	NM_003917	human	genbank	57_37b	-1	reviewed	missense	c.361	p.G121S	1.000	superfamily_ARM-type_fold,HMMPfam_Adaptin_N	superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2	-	no_errors
ARHGAP23	57636	genome.wustl.edu	37	17	36646353	36646353	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36646353	36646353	C	A	SNP	ARHGAP23	NM_020876	human	genbank	57_37b	+1	provisional	missense	c.2715	p.N905K	0.031	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ARNTL	406	genome.wustl.edu	37	11	13375994	13375998	+	Frame_Shift_Del	DEL	CAGTA	CAGTA	-	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	CAGTA	CAGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	13375994	13375998	CAGTA	-	DEL	ARNTL	NM_001030272	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.139_140	p.Q47fs	1.000:1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	(deletion:cds_exon[13375856,13375995], intron[13375996,13378285])	no_errors
ATHL1	80162	genome.wustl.edu	37	11	289844	289844	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	289844	289844	A	C	SNP	ATHL1	NM_025092	human	genbank	57_37b	+1	validated	missense	c.28	p.T10P	0.000	NULL	superfamily_Six-hairpin glycosidases,HMMPfam_Glyco_hydro_65m	-	no_errors
BDKRB2	624	genome.wustl.edu	37	14	96707798	96707798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96707798	96707798	G	T	SNP	BDKRB2	NM_000623	human	genbank	57_37b	+1	reviewed	missense	c.1133	p.R378L	0.001	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C1orf50	79078	genome.wustl.edu	37	1	43232996	43232996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43232996	43232996	C	T	SNP	C1orf50	NM_024097	human	genbank	57_37b	+1	predicted	missense	c.14	p.A5V	0.000	NULL	HMMPfam_DUF2452	-	no_errors
C6orf103	79747	genome.wustl.edu	37	6	147047304	147047304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	147047304	147047304	G	A	SNP	C6orf103	NM_024694	human	genbank	57_37b	+1	provisional	missense	c.2323	p.E775K	1.000	NULL	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_IQ	-	no_errors
C6orf129	154467	genome.wustl.edu	37	6	37452634	37452634	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	37452634	37452634	A	C	SNP	C6orf129	NM_138493	human	genbank	57_37b	-1	validated	missense	c.142	p.S48A	0.997	NULL	NULL	-	no_errors
CALCRL	10203	genome.wustl.edu	37	2	188211077	188211077	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	188211077	188211077	C	G	SNP	CALCRL	NM_005795	human	genbank	57_37b	-1	validated	missense	c.1220	p.G407A	1.000	NULL	superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CALU	813	genome.wustl.edu	37	7	128388708	128388708	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128388708	128388708	A	G	SNP	CALU	NM_001130674	human	genbank	57_37b	+1	reviewed	missense	c.71	p.K24R	1.000	NULL	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand	-	no_errors
CAMSAP1	157922	genome.wustl.edu	37	9	138710894	138710894	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138710894	138710894	C	A	SNP	CAMSAP1	NM_015447	human	genbank	57_37b	-1	validated	missense	c.3921	p.Q1307H	1.000	NULL	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
CEP164	22897	genome.wustl.edu	37	11	117252486	117252487	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117252486	117252487	-	C	INS	CEP164	NM_014956	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1479_1480	p.P494fs	0.299:0.293	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors
CPXCR1	53336	genome.wustl.edu	37	X	88008777	88008777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	88008777	88008777	C	T	SNP	CPXCR1	NM_033048	human	genbank	57_37b	+1	validated	missense	c.362	p.A121V	0.000	NULL	HMMSmart_ZnF_C2H2	-	no_errors
DVL1	1855	genome.wustl.edu	37	1	1275142	1275142	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1275142	1275142	C	A	SNP	DVL1	NM_004421	human	genbank	57_37b	-1	reviewed	silent	c.960	p.V320	1.000	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	HMMPfam_DIX,HMMSmart_DAX,HMMPfam_Dishevelled,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP	-	no_errors
DYNC1LI2	1783	genome.wustl.edu	37	16	66766320	66766320	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	66766320	66766320	T	C	SNP	DYNC1LI2	NM_006141	human	genbank	57_37b	-1	validated	missense	c.851	p.Y284C	1.000	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EGR3	1960	genome.wustl.edu	37	8	22548865	22548865	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22548865	22548865	G	-	DEL	EGR3	NM_004430	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.285	p.N96fs	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[22547986,22548995])	no_errors
ENPP2	5168	genome.wustl.edu	37	8	120594788	120594788	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	120594788	120594788	T	C	SNP	ENPP2	NM_006209	human	genbank	57_37b	-1	reviewed	missense	c.1754	p.H585R	1.000	NULL	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS	-	no_errors
ENSG00000246426	0	genome.wustl.edu	37	4	39448289	39448289	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39448289	39448289	A	C	SNP	ENSG00000246426	ENST00000501940	human	ensembl	57_37b	-1	known	splice_site	c.NULL	NULL	0.632	-	-	-	no_errors
ENSG00000246660	0	genome.wustl.edu	37	5	139625364	139625364	+	RNA	SNP	T	T	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	139625364	139625364	T	G	SNP	ENSG00000246660	ENST00000501551	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors
GIGYF1	64599	genome.wustl.edu	37	7	100285619	100285619	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100285619	100285619	G	A	SNP	GIGYF1	NM_022574	human	genbank	57_37b	-1	validated	silent	c.150	p.Y50	0.022	NULL	superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF	-	no_errors
GJB4	127534	genome.wustl.edu	37	1	35227586	35227586	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35227586	35227586	A	C	SNP	GJB4	NM_153212	human	genbank	57_37b	+1	reviewed	missense	c.731	p.H244P	0.000	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
HRH1	3269	genome.wustl.edu	37	3	11301157	11301157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	11301157	11301157	C	T	SNP	HRH1	NM_000861	human	genbank	57_37b	+1	reviewed	missense	c.434	p.S145L	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
IPO8	10526	genome.wustl.edu	37	12	30822138	30822138	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30822138	30822138	C	G	SNP	IPO8	NM_006390	human	genbank	57_37b	-1	reviewed	missense	c.1123	p.E375Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N	-	no_errors
ITGBL1	9358	genome.wustl.edu	37	13	102235608	102235608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	102235608	102235608	C	T	SNP	ITGBL1	NM_004791	human	genbank	57_37b	+1	provisional	missense	c.770	p.P257L	1.000	superfamily_SSF57196	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF	-	no_errors
KIAA0232	9778	genome.wustl.edu	37	4	6863013	6863013	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6863013	6863013	A	-	DEL	KIAA0232	NM_001100590	human	genbank	57_37b	+1	validated	frame_shift_del	c.904	p.N302fs	0.896	NULL	NULL	(deletion:cds_exon[6862628,6865910])	no_errors
LDB2	9079	genome.wustl.edu	37	4	16597371	16597371	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16597371	16597371	G	T	SNP	LDB2	NM_001290	human	genbank	57_37b	-1	validated	missense	c.363	p.D121E	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC100287558	0	genome.wustl.edu	37	14	73711673	73711673	+	Missense_Mutation	SNP	G	G	T	rs2280794	byCluster;by1000genomes	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73711673	73711673	G	T	SNP	LOC100287558	XM_002343284	human	genbank	57_37b	-1	model	missense	c.2654	p.A885E	0.000	NULL	NULL	-	
LOC100287678	0	genome.wustl.edu	37	11	62572890	62572890	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62572890	62572890	T	C	SNP	LOC100287678	XM_002343090	human	genbank	57_37b	+1	model	silent	c.696	p.T232	0.000	NULL	NULL	-	no_errors
LOC728064	728064	genome.wustl.edu	37	10	43197549	43197549	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43197549	43197549	C	T	SNP	LOC728064	XR_015196	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.925	-	-	-	no_errors
NBPF14	25832	genome.wustl.edu	37	1	148017589	148017589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	148017589	148017589	G	A	SNP	NBPF14	NM_015383	human	genbank	57_37b	-1	predicted	missense	c.694	p.P232S	0.001	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NEB	4703	genome.wustl.edu	37	2	152420119	152420119	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152420119	152420119	C	A	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	splice_site	c.13590+1	e90+1	1.000	-	-	-	no_errors
NOL8	55035	genome.wustl.edu	37	9	95077554	95077554	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95077554	95077554	A	C	SNP	NOL8	NM_017948	human	genbank	57_37b	-1	validated	silent	c.1353	p.S451	0.001	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
NR1H4	9971	genome.wustl.edu	37	12	100928730	100928730	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100928730	100928730	G	C	SNP	NR1H4	NM_005123	human	genbank	57_37b	+1	provisional	missense	c.649	p.D217H	1.000	NULL	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
P2RX5	5026	genome.wustl.edu	37	17	3592830	3592830	+	Missense_Mutation	SNP	C	C	T	rs1050281	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3592830	3592830	C	T	SNP	P2RX5	NM_002561	human	genbank	57_37b	-1	reviewed	missense	c.709	p.V237M	0.000	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	
PAFAH1B3	5050	genome.wustl.edu	37	19	42801429	42801429	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42801429	42801429	T	G	SNP	PAFAH1B3	NM_002573	human	genbank	57_37b	-1	reviewed	missense	c.497	p.H166P	0.558	superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL	superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL	-	no_errors
PCSK5	5125	genome.wustl.edu	37	9	78790217	78790217	+	Nonstop_Mutation	SNP	A	A	C	rs62556621	byFrequency	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	78790217	78790217	A	C	SNP	PCSK5	ENST00000376767	human	ensembl	57_37b	+1	known	nonstop	c.2072	p.*691S	0.000	NULL	superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein	-	
PILRB	29990	genome.wustl.edu	37	7	99954457	99954457	+	Splice_Site	SNP	G	T	T	rs41280971	byCluster;byFrequency;by1000genomes	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99954457	99954457	G	T	SNP	PILRB	ENST00000413850	human	ensembl	57_37b	+1	known	splice_site	c.232+2	e1+2	0.000	-	-	-	
PIP4K2A	5305	genome.wustl.edu	37	10	22880688	22880688	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	22880688	22880688	G	T	SNP	PIP4K2A	NM_005028	human	genbank	57_37b	-1	reviewed	missense	c.362	p.P121H	1.000	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K	-	no_errors
PXDN	7837	genome.wustl.edu	37	2	1684022	1684023	+	Frame_Shift_Ins	INS	-	-	AT	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1684022	1684023	-	AT	INS	PXDN	NM_012293	human	genbank	57_37b	-1	validated	frame_shift_ins	c.673_672	p.P224fs	0.996:0.310	superfamily_L domain-like,HMMSmart_SM00082,HMMPfam_LRRCT	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors
RGPD4	285190	genome.wustl.edu	37	2	108496541	108496541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108496541	108496541	C	A	SNP	RGPD4	NM_182588	human	genbank	57_37b	+1	validated	missense	c.5042	p.A1681E	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
RNF213	57674	genome.wustl.edu	37	17	78346457	78346457	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78346457	78346457	A	C	SNP	RNF213	ENST00000336301	human	ensembl	57_37b	+1	known	missense	c.6893	p.Y2298S	0.998	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
SOX6	55553	genome.wustl.edu	37	11	16007966	16007966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	16007966	16007966	C	T	SNP	SOX6	NM_033326	human	genbank	57_37b	-1	reviewed	missense	c.1907	p.G636E	1.000	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
TIAM2	26230	genome.wustl.edu	37	6	155571033	155571035	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	155571033	155571035	AGA	-	DEL	TIAM2	NM_012454	human	genbank	57_37b	+1	reviewed	in_frame_del	c.3881_3883	p.K1295in_frame_del	1.000:1.000:1.000	superfamily_DBL homology domain (DH-domain)	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1	(deletion:cds_exon[155570985,155571103])	no_errors
TNC	3371	genome.wustl.edu	37	9	117838681	117838681	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117838681	117838681	T	C	SNP	TNC	ENST00000442945	human	ensembl	57_37b	-1	known	splice_site	c.2847+1	e7+1	1.000	-	-	-	no_errors
UNC45A	55898	genome.wustl.edu	37	15	91479403	91479403	+	Missense_Mutation	SNP	C	C	T	rs113523355	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91479403	91479403	C	T	SNP	UNC45A	ENST00000439771	human	ensembl	57_37b	+1	known	missense	c.287	p.P96L	0.098	NULL	HMMPfam_TPR_1,superfamily_SSF48452	-	
VPS72	6944	genome.wustl.edu	37	1	151150560	151150560	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151150560	151150560	G	A	SNP	VPS72	NM_005997	human	genbank	57_37b	-1	provisional	silent	c.624	p.P208	0.260	HMMPfam_YL1	HMMPfam_YL1,HMMPfam_YL1_C	-	no_errors
WDR64	128025	genome.wustl.edu	37	1	241823900	241823900	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	241823900	241823900	G	C	SNP	WDR64	ENST00000366552	human	ensembl	57_37b	+1	known	missense	c.214	p.D72H	1.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1	-	no_errors
ZNF438	220929	genome.wustl.edu	37	10	31138771	31138776	+	In_Frame_Del	DEL	CTGGCT	CTGGCT	-	novel	unknown	TCGA-A2-A04Y-01A-21W-A050-09	TCGA-A2-A04Y-10A-01W-A055-09	CTGGCT	CTGGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31138771	31138776	CTGGCT	-	DEL	ZNF438	NM_001143766	human	genbank	57_37b	-1	validated	in_frame_del	c.563_558	p.AS187in_frame_del	0.000:0.002:0.000:0.001:0.001:0.019	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[31137460,31139296])	no_errors
