Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTS2	9509	genome.wustl.edu	37	5	178556987	178556987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178556987	178556987	G	A	SNP	ADAMTS2	NM_014244	human	genbank	57_37b	-1	reviewed	silent	c.2403	p.D801	0.074	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADH7	131	genome.wustl.edu	37	4	100341731	100341731	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100341731	100341731	C	T	SNP	ADH7	NM_000673	human	genbank	57_37b	-1	reviewed	missense	c.820	p.V274M	0.164	superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N	superfamily_GroES_like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N	-	no_errors
ATG2B	55102	genome.wustl.edu	37	14	96797849	96797849	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96797849	96797849	T	C	SNP	ATG2B	NM_018036	human	genbank	57_37b	-1	validated	missense	c.1594	p.N532D	0.798	NULL	HMMPfam_ATG_C	-	no_errors
ATP2B3	492	genome.wustl.edu	37	X	152807217	152807217	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152807217	152807217	G	T	SNP	ATP2B3	NM_001001344	human	genbank	57_37b	+1	reviewed	missense	c.497	p.C166F	0.879	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
BMPR2	659	genome.wustl.edu	37	2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203242213	203242213	C	T	SNP	BMPR2	NM_001204	human	genbank	57_37b	+1	reviewed	nonsense	c.16	p.Q6*	0.233	NULL	PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
C15orf2	23742	genome.wustl.edu	37	15	24921771	24921771	+	Missense_Mutation	SNP	G	G	C	rs1563102	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	24921771	24921771	G	C	SNP	C15orf2	NM_018958	human	genbank	57_37b	+1	validated	missense	c.757	p.G253R	0.000	NULL	NULL	-	
CDKN1B	1027	genome.wustl.edu	37	12	12871146	12871147	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12871146	12871147	-	C	INS	CDKN1B	NM_004064	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.373_374	p.E126fs	0.665:0.670	NULL	HMMPfam_CDI	-	no_errors
DIRAS2	54769	genome.wustl.edu	37	9	93375893	93375893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	93375893	93375893	G	A	SNP	DIRAS2	NM_017594	human	genbank	57_37b	-1	validated	missense	c.217	p.R73W	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	no_errors
DLK1	8788	genome.wustl.edu	37	14	101200651	101200651	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101200651	101200651	C	T	SNP	DLK1	NM_003836	human	genbank	57_37b	+1	reviewed	silent	c.570	p.G190	0.678	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL	-	no_errors
DSG3	1830	genome.wustl.edu	37	18	29044224	29044224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29044224	29044224	C	T	SNP	DSG3	NM_001944	human	genbank	57_37b	+1	reviewed	missense	c.1150	p.R384C	0.667	superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1	-	no_errors
EFR3A	23167	genome.wustl.edu	37	8	132998454	132998454	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	132998454	132998454	G	-	DEL	EFR3A	NM_015137	human	genbank	57_37b	+1	validated	frame_shift_del	c.1883	p.R628fs	1.000	NULL	superfamily_ARM repeat	(deletion:cds_exon[132998441,132998508])	no_errors
ENSG00000246407	0	genome.wustl.edu	37	12	8384821	8384821	+	RNA	SNP	C	C	T	rs11044162	byCluster;byFrequency	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8384821	8384821	C	T	SNP	ENSG00000246407	ENST00000499592	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.034	-	-	-	
FAM120C	54954	genome.wustl.edu	37	X	54161503	54161503	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54161503	54161503	T	A	SNP	FAM120C	NM_017848	human	genbank	57_37b	-1	validated	silent	c.1377	p.P459	0.963	NULL	NULL	-	no_errors
FAM83H	286077	genome.wustl.edu	37	8	144808572	144808572	+	Missense_Mutation	SNP	C	C	T	rs117987215	by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144808572	144808572	C	T	SNP	FAM83H	NM_198488	human	genbank	57_37b	-1	reviewed	missense	c.3059	p.R1020Q	0.001	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	
FAM86D	692099	genome.wustl.edu	37	3	75484244	75484244	+	RNA	SNP	A	A	G	rs9848544	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	75484244	75484244	A	G	SNP	FAM86D	NR_024241	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
FMO1	2326	genome.wustl.edu	37	1	171236862	171236862	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171236862	171236862	C	A	SNP	FMO1	NM_002021	human	genbank	57_37b	+1	reviewed	missense	c.313	p.Q105K	1.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,PatternScan_LIPOCALIN,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
GATSL3	0	genome.wustl.edu	37	22	30685364	30685364	+	Missense_Mutation	SNP	G	G	A	rs5763932	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30685364	30685364	G	A	SNP	GATSL3	ENST00000440704	human	ensembl	57_37b	-1	known	missense	c.122	p.P41L	0.684	NULL	NULL	-	
GFPT2	9945	genome.wustl.edu	37	5	179740827	179740827	+	Missense_Mutation	SNP	T	T	C	rs2303007	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179740827	179740827	T	C	SNP	GFPT2	NM_005110	human	genbank	57_37b	-1	provisional	missense	c.1411	p.I471V	1.000	superfamily_SSF53697,HMMPfam_SIS	HMMPfam_GATase_2,superfamily_SSF56235,superfamily_SSF53697,HMMPfam_SIS	-	
GLT1D1	144423	genome.wustl.edu	37	12	129467539	129467539	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129467539	129467539	C	T	SNP	GLT1D1	NM_144669	human	genbank	57_37b	+1	provisional	silent	c.705	p.N235	0.000	superfamily_SSF53756,HMMPfam_Glycos_transf_1	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
GPA33	10223	genome.wustl.edu	37	1	167024281	167024281	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167024281	167024281	G	T	SNP	GPA33	NM_005814	human	genbank	57_37b	-1	reviewed	silent	c.759	p.G253	0.003	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig	-	no_errors
GPR98	84059	genome.wustl.edu	37	5	90086905	90086905	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90086905	90086905	T	C	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	silent	c.14259	p.S4753	0.993	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors
JSRP1	126306	genome.wustl.edu	37	19	2254442	2254442	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2254442	2254442	A	T	SNP	JSRP1	NM_144616	human	genbank	57_37b	-1	provisional	splice_site	c.147+2	e2+2	0.946	-	-	-	no_errors
KIF16B	55614	genome.wustl.edu	37	20	16486798	16486798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	16486798	16486798	C	T	SNP	KIF16B	NM_024704	human	genbank	57_37b	-1	validated	missense	c.737	p.S246N	1.000	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312	-	no_errors
KRT35	3886	genome.wustl.edu	37	17	39633898	39633898	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39633898	39633898	G	T	SNP	KRT35	NM_002280	human	genbank	57_37b	-1	reviewed	silent	c.1092	p.A364	0.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
LARP4B	23185	genome.wustl.edu	37	10	871788	871788	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	871788	871788	C	A	SNP	LARP4B	NM_015155	human	genbank	57_37b	-1	provisional	missense	c.1148	p.G383V	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
LINGO2	158038	genome.wustl.edu	37	9	27949369	27949369	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27949369	27949369	G	T	SNP	LINGO2	NM_152570	human	genbank	57_37b	-1	provisional	missense	c.1301	p.A434E	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
LLGL2	3993	genome.wustl.edu	37	17	73564739	73564745	+	Frame_Shift_Del	DEL	GCCGGCA	GCCGGCA	-	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	GCCGGCA	GCCGGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73564739	73564745	GCCGGCA	-	DEL	LLGL2	NM_001031803	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1219_1225	p.S409fs	0.997:0.998:0.000:0.999:1.000:0.695:0.559	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[73564557,73564774])	no_errors
LOC100286905	0	genome.wustl.edu	37	6	87865327	87865327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87865327	87865327	C	T	SNP	LOC100286905	XM_002342650	human	genbank	57_37b	-1	model	missense	c.311	p.R104Q	1.000	NULL	NULL	-	no_errors
LOC100287918	0	genome.wustl.edu	37	6	127981108	127981108	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	127981108	127981108	T	C	SNP	LOC100287918	XM_002342669	human	genbank	57_37b	+1	model	silent	c.147	p.N49	0.994	NULL	NULL	-	no_errors
LOC645744	645744	genome.wustl.edu	37	17	33826344	33826344	+	RNA	SNP	T	T	C	rs11654381	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33826344	33826344	T	C	SNP	LOC645744	XR_017633	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.298	-	-	-	
LOC728643	728643	genome.wustl.edu	37	10	47133375	47133375	+	RNA	SNP	C	C	T	rs4979736	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	47133375	47133375	C	T	SNP	LOC728643	NR_003277	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.708	-	-	-	
MAN2C1	4123	genome.wustl.edu	37	15	75651980	75651980	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75651980	75651980	C	T	SNP	MAN2C1	NM_006715	human	genbank	57_37b	-1	validated	silent	c.1929	p.P643	0.000	HMMPfam_Glyco_hydro_38C	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,HMMPfam_Glyco_hydro_38C	-	no_errors
MDGA1	266727	genome.wustl.edu	37	6	37612289	37612290	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	37612289	37612290	TA	-	DEL	MDGA1	NM_153487	human	genbank	57_37b	-1	validated	frame_shift_del	c.2385_2384	p.I795fs	0.998:1.000	HMMSmart_SM00137,HMMPfam_MAM	PatternScan_NITROGENASE_1_1,HMMPfam_I-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00137,HMMPfam_MAM	(deletion:cds_exon[37612273,37612425])	no_errors
MLL3	58508	genome.wustl.edu	37	7	151851131	151851132	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151851131	151851132	-	A	INS	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.12240_12239	p.S4081fs	0.927:0.999	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
MYH1	4619	genome.wustl.edu	37	17	10404694	10404694	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10404694	10404694	G	A	SNP	MYH1	NM_005963	human	genbank	57_37b	-1	reviewed	silent	c.3471	p.A1157	0.007	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
OR10A2	341276	genome.wustl.edu	37	11	6891161	6891161	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6891161	6891161	G	T	SNP	OR10A2	NM_001004460	human	genbank	57_37b	+1	provisional	missense	c.176	p.G59V	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR10C1	442194	genome.wustl.edu	37	6	29408551	29408551	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29408551	29408551	C	T	SNP	OR10C1	NM_013941	human	genbank	57_37b	+1	provisional	silent	c.759	p.T253	0.189	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4S2	219431	genome.wustl.edu	37	11	55419253	55419253	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55419253	55419253	G	T	SNP	OR4S2	NM_001004059	human	genbank	57_37b	+1	validated	missense	c.874	p.V292L	0.972	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PKHD1	5314	genome.wustl.edu	37	6	51637584	51637584	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51637584	51637584	A	T	SNP	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	missense	c.8558	p.V2853D	1.000	HMMPfam_G8	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
PRSS33	260429	genome.wustl.edu	37	16	2834663	2834663	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2834663	2834663	C	G	SNP	PRSS33	NM_152891	human	genbank	57_37b	-1	validated	missense	c.825	p.Q275H	0.961	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PTPN14	5784	genome.wustl.edu	37	1	214557597	214557597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214557597	214557597	G	A	SNP	PTPN14	NM_005401	human	genbank	57_37b	-1	reviewed	missense	c.1601	p.S534L	0.997	NULL	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RAPGEF3	10411	genome.wustl.edu	37	12	48141337	48141337	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48141337	48141337	G	A	SNP	RAPGEF3	NM_001098531	human	genbank	57_37b	-1	validated	nonsense	c.1546	p.R516*	1.000	superfamily_Ras GEF	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
S1PR5	53637	genome.wustl.edu	37	19	10625096	10625096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10625096	10625096	C	T	SNP	S1PR5	NM_030760	human	genbank	57_37b	-1	validated	missense	c.592	p.V198M	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SARDH	1757	genome.wustl.edu	37	9	136599022	136599022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136599022	136599022	C	T	SNP	SARDH	NM_001134707	human	genbank	57_37b	-1	reviewed	missense	c.274	p.G92R	0.969	superfamily_SSF51905,HMMPfam_DAO	superfamily_SSF51905,HMMPfam_DAO,superfamily_SSF54373,superfamily_SSF103025,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_SSF101790	-	no_errors
ST3GAL1	6482	genome.wustl.edu	37	8	134474151	134474156	+	In_Frame_Del	DEL	GAGGAT	GAGGAT	-	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	GAGGAT	GAGGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134474151	134474156	GAGGAT	-	DEL	ST3GAL1	NM_003033	human	genbank	57_37b	-1	reviewed	in_frame_del	c.816_811	p.IL271in_frame_del	0.389:0.998:1.000:0.992:1.000:1.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	(deletion:cds_exon[134474118,134474237])	no_errors
TAS2R16	50833	genome.wustl.edu	37	7	122635049	122635049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122635049	122635049	G	A	SNP	TAS2R16	NM_016945	human	genbank	57_37b	-1	reviewed	missense	c.640	p.H214Y	0.000	HMMPfam_TAS2R	HMMPfam_TAS2R	-	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176752091	176752091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176752091	176752091	T	C	SNP	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	missense	c.1145	p.N382S	0.987	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
TRIM16L	147166	genome.wustl.edu	37	17	18638608	18638608	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18638608	18638608	C	T	SNP	TRIM16L	NM_001037330	human	genbank	57_37b	+1	provisional	silent	c.882	p.G294	0.291	HMMPfam_SPRY,HMMSmart_SPRY	HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
VNN1	8876	genome.wustl.edu	37	6	133015262	133015262	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	133015262	133015262	T	C	SNP	VNN1	NM_004666	human	genbank	57_37b	-1	reviewed	missense	c.401	p.Y134C	0.995	superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase	superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase	-	no_errors
VPS13D	55187	genome.wustl.edu	37	1	12445347	12445347	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CS-01A-11D-A10Y-09	TCGA-A2-A0CS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12445347	12445347	G	A	SNP	VPS13D	NM_015378	human	genbank	57_37b	+1	reviewed	missense	c.11399	p.S3800N	1.000	NULL	superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_DUF1162	-	no_errors
