Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ALAS2	212	genome.wustl.edu	37	X	55039950	55039950	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	55039950	55039950	G	T	SNP	ALAS2	NM_000032	human	genbank	57_37b	-1	reviewed	missense	c.1569	p.H523Q	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	HMMPfam_Preseq_ALAS,superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
CD1C	911	genome.wustl.edu	37	1	158261173	158261173	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158261173	158261173	G	T	SNP	CD1C	NM_001765	human	genbank	57_37b	+1	reviewed	missense	c.311	p.S104I	0.000	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
CHST2	9435	genome.wustl.edu	37	3	142841031	142841031	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142841031	142841031	T	-	DEL	CHST2	NM_004267	human	genbank	57_37b	+1	validated	frame_shift_del	c.1373	p.M458fs	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	(deletion:cds_exon[142839659,142841251])	no_errors
CPA1	1357	genome.wustl.edu	37	7	130027699	130027699	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130027699	130027699	C	T	SNP	CPA1	NM_001868	human	genbank	57_37b	+1	reviewed	silent	c.1107	p.Y369	0.061	superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14	superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
DNHD1	144132	genome.wustl.edu	37	11	6592127	6592127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6592127	6592127	G	A	SNP	DNHD1	NM_144666	human	genbank	57_37b	+1	provisional	missense	c.13385	p.R4462H	0.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_Ferritin-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynein_heavy	-	no_errors
FAM90A1	55138	genome.wustl.edu	37	12	8376712	8376712	+	Nonsense_Mutation	SNP	C	C	A	rs117419511	by1000genomes	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8376712	8376712	C	A	SNP	FAM90A1	NM_018088	human	genbank	57_37b	-1	validated	nonsense	c.223	p.E75*	0.000	NULL	NULL	-	
FN1	2335	genome.wustl.edu	37	2	216229692	216229692	+	Silent	SNP	A	G	G	rs11651	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216229692	216229692	A	G	SNP	FN1	NM_212482	human	genbank	57_37b	-1	reviewed	silent	c.7161	p.Y2387	0.097	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	
GUCY2F	2986	genome.wustl.edu	37	X	108718511	108718511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	108718511	108718511	C	T	SNP	GUCY2F	NM_001522	human	genbank	57_37b	-1	reviewed	missense	c.655	p.V219I	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
IQCB1	9657	genome.wustl.edu	37	3	121508941	121508941	+	Missense_Mutation	SNP	T	T	C	rs112790935	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121508941	121508941	T	C	SNP	IQCB1	NM_001023570	human	genbank	57_37b	-1	reviewed	missense	c.1108	p.M370V	0.936	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	
IQCH	64799	genome.wustl.edu	37	15	67782366	67782366	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	67782366	67782366	T	C	SNP	IQCH	NM_001031715	human	genbank	57_37b	+1	validated	missense	c.2825	p.L942S	0.019	NULL	HMMPfam_IQ	-	no_errors
KIAA0319	9856	genome.wustl.edu	37	6	24566822	24566823	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	24566822	24566823	-	A	INS	KIAA0319	NM_014809	human	genbank	57_37b	-1	reviewed	splice_site_ins	c.2292+2_2292+1	e13+2	1.000:1.000	-	-	-	no_errors
KIAA0586	9786	genome.wustl.edu	37	14	58941356	58941356	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58941356	58941356	C	G	SNP	KIAA0586	NM_014749	human	genbank	57_37b	+1	validated	missense	c.2438	p.S813C	0.998	NULL	NULL	-	no_errors
KIF3C	3797	genome.wustl.edu	37	2	26204266	26204266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26204266	26204266	C	T	SNP	KIF3C	NM_002254	human	genbank	57_37b	-1	validated	missense	c.521	p.G174D	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KTN1	3895	genome.wustl.edu	37	14	56114770	56114770	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	56114770	56114770	G	A	SNP	KTN1	NM_001079521	human	genbank	57_37b	+1	validated	silent	c.2235	p.K745	1.000	superfamily_Spectrin repeat	superfamily_Spectrin repeat	-	no_errors
MED23	9439	genome.wustl.edu	37	6	131926396	131926396	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131926396	131926396	C	A	SNP	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	missense	c.1597	p.V533F	1.000	NULL	NULL	-	no_errors
MUC17	140453	genome.wustl.edu	37	7	100676653	100676653	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100676653	100676653	T	A	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	silent	c.1956	p.T652	0.002	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
N4BP2L2	10443	genome.wustl.edu	37	13	33017767	33017767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33017767	33017767	G	A	SNP	N4BP2L2	NM_033111	human	genbank	57_37b	-1	validated	missense	c.907	p.H303Y	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NBEAL1	65065	genome.wustl.edu	37	2	204001452	204001452	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	204001452	204001452	G	T	SNP	NBEAL1	NM_001114132	human	genbank	57_37b	+1	validated	missense	c.4433	p.G1478V	1.000	NULL	superfamily_ARM repeat,PatternScan_5_NUCLEOTIDASE_1,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
PABPC5	140886	genome.wustl.edu	37	X	90690698	90690698	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	90690698	90690698	C	A	SNP	PABPC5	NM_080832	human	genbank	57_37b	+1	validated	missense	c.122	p.A41D	1.000	HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD	HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD,HMMSmart_SM00361	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140202883	140202883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140202883	140202883	C	T	SNP	PCDHA5	NM_018908	human	genbank	57_37b	+1	reviewed	missense	c.1523	p.S508L	0.991	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PDS5A	23244	genome.wustl.edu	37	4	39839575	39839600	+	Frame_Shift_Del	DEL	TCCTGACCCACTGCAGCTCTCTTCCT	TCCTGACCCACTGCAGCTCTCTTCCT	-	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	TCCTGACCCACTGCAGCTCTCTTCCT	TCCTGACCCACTGCAGCTCTCTTCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39839575	39839600	TCCTGACCCACTGCAGCTCTCTTCCT	-	DEL	PDS5A	NM_001100399	human	genbank	57_37b	-1	validated	frame_shift_del	c.3911_3886	p.R1296fs	0.997:1.000:1.000:1.000:0.996:0.147:0.101:0.036:0.000:0.000:0.007:0.007:0.090:0.078:0.006:0.941:0.996:1.000:1.000:0.997:0.992:1.000:1.000:0.988:1.000:1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	(deletion:cds_exon[39839476,39839828])	no_errors
SLC24A4	123041	genome.wustl.edu	37	14	92958577	92958577	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92958577	92958577	C	T	SNP	SLC24A4	NM_153646	human	genbank	57_37b	+1	validated	missense	c.1658	p.A553V	0.834	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
SLC2A1	6513	genome.wustl.edu	37	1	43394666	43394666	+	Silent	SNP	G	G	A	rs2229681	byCluster;byFrequency;by1000genomes	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43394666	43394666	G	A	SNP	SLC2A1	NM_006516	human	genbank	57_37b	-1	reviewed	silent	c.1011	p.H337	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	
SLC4A10	57282	genome.wustl.edu	37	2	162711543	162711543	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	162711543	162711543	T	G	SNP	SLC4A10	NM_022058	human	genbank	57_37b	+1	validated	silent	c.480	p.A160	0.955	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1	-	no_errors
SPTBN4	57731	genome.wustl.edu	37	19	41038673	41038673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41038673	41038673	G	A	SNP	SPTBN4	NM_020971	human	genbank	57_37b	+1	reviewed	missense	c.4090	p.E1364K	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
TEP1	7011	genome.wustl.edu	37	14	20876336	20876336	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20876336	20876336	A	T	SNP	TEP1	NM_007110	human	genbank	57_37b	-1	reviewed	missense	c.263	p.L88Q	0.810	HMMPfam_TEP1_N	HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZCCHC5	203430	genome.wustl.edu	37	X	77912638	77912638	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0D4-01A-11W-A019-09	TCGA-A2-A0D4-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	77912638	77912638	T	A	SNP	ZCCHC5	NM_152694	human	genbank	57_37b	-1	reviewed	missense	c.1280	p.N427I	0.000	NULL	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors
