Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
CCR4	1233	genome.wustl.edu	37	3	32995697	32995697	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	32995697	32995697	G	A	SNP	CCR4	NM_005508	human	genbank	57_37b	+1	reviewed	silent	c.783	p.V261	0.999	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DNAH8	1769	genome.wustl.edu	37	6	38754658	38754658	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	38754658	38754658	A	-	DEL	DNAH8	NM_001371	human	genbank	57_37b	+1	validated	frame_shift_del	c.1862	p.D621fs	1.000	HMMPfam_DHC_N1	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	(deletion:cds_exon[38754541,38754728])	no_errors
EEF1A1	1915	genome.wustl.edu	37	6	74228775	74228776	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	74228775	74228776	-	T	INS	EEF1A1	NM_001402	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.501_500	p.Y167fs	0.877:0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	no_errors
ENSG00000245259	0	genome.wustl.edu	37	15	78290944	78290944	+	RNA	SNP	A	A	G	rs72732537	byCluster;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78290944	78290944	A	G	SNP	ENSG00000245259	ENST00000499334	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
LCN8	138307	genome.wustl.edu	37	9	139650167	139650167	+	Missense_Mutation	SNP	G	G	A	rs117603351	by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139650167	139650167	G	A	SNP	LCN8	ENST00000371686	human	ensembl	57_37b	-1	known	missense	c.548	p.S183F	0.006	PatternScan_PA2_HIS	PatternScan_PA2_HIS	-	
LOC100128126	0	genome.wustl.edu	37	8	74353346	74353346	+	RNA	SNP	C	C	T	rs12542775	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	74353346	74353346	C	T	SNP	LOC100128126	XR_078389	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.002	-	-	-	
LOC100290888	0	genome.wustl.edu	37	12	40787808	40787808	+	Missense_Mutation	SNP	G	G	T	rs12426513	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40787808	40787808	G	T	SNP	LOC100290888	XM_002347345	human	genbank	57_37b	+1	model	missense	c.475	p.V159L	0.004	NULL	NULL	-	
PIM3	415116	genome.wustl.edu	37	22	50356693	50356693	+	Missense_Mutation	SNP	T	T	C	rs4077129	byCluster;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50356693	50356693	T	C	SNP	PIM3	NM_001001852	human	genbank	57_37b	+1	validated	missense	c.899	p.V300A	0.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	
RSBN1	54665	genome.wustl.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114354654	114354654	T	C	SNP	RSBN1	NM_018364	human	genbank	57_37b	-1	validated	silent	c.381	p.P127	0.062	NULL	NULL	-	
SCAF1	58506	genome.wustl.edu	37	19	50156896	50156896	+	Silent	SNP	T	T	C	rs10401743	byCluster;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50156896	50156896	T	C	SNP	SCAF1	NM_021228	human	genbank	57_37b	+1	validated	silent	c.3250	p.L1084	0.519	NULL	NULL	-	
SCHIP1	29970	genome.wustl.edu	37	3	159482272	159482274	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	159482272	159482274	GCA	-	DEL	SCHIP1	NM_014575	human	genbank	57_37b	+1	provisional	in_frame_del	c.104_106	p.S39in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_SCHIP-1	(deletion:cds_exon[159482232,159482927])	no_errors
SPOCD1	90853	genome.wustl.edu	37	1	32256590	32256590	+	Missense_Mutation	SNP	G	G	A	rs35252813	byCluster;by1000genomes	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32256590	32256590	G	A	SNP	SPOCD1	NM_144569	human	genbank	57_37b	-1	provisional	missense	c.3265	p.P1089S	0.000	NULL	superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510,HMMPfam_TFIIS_M,HMMPfam_SPOC	-	
TLR7	51284	genome.wustl.edu	37	X	12904271	12904271	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0ES-01A-11D-A10Y-09	TCGA-A2-A0ES-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	12904271	12904271	A	G	SNP	TLR7	NM_016562	human	genbank	57_37b	+1	reviewed	missense	c.644	p.N215S	1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
