Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
BCMO1	53630	genome.wustl.edu	37	16	81295772	81295772	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81295772	81295772	G	C	SNP	BCMO1	NM_017429	human	genbank	57_37b	+1	reviewed	missense	c.355	p.D119H	1.000	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
C14orf101	54916	genome.wustl.edu	37	14	57051723	57051723	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	57051723	57051723	A	T	SNP	C14orf101	NM_017799	human	genbank	57_37b	+1	validated	missense	c.165	p.E55D	1.000	NULL	NULL	-	no_errors
CLCN3	1182	genome.wustl.edu	37	4	170628374	170628374	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	170628374	170628374	A	T	SNP	CLCN3	NM_173872	human	genbank	57_37b	+1	validated	missense	c.2106	p.R702S	1.000	HMMPfam_CBS,HMMSmart_CBS	superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631	-	no_errors
CTCFL	140690	genome.wustl.edu	37	20	56087795	56087795	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	56087795	56087795	G	C	SNP	CTCFL	NM_080618	human	genbank	57_37b	-1	reviewed	silent	c.1344	p.R448	0.856	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117391869	117391869	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117391869	117391869	C	-	DEL	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1369	p.D457fs	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	(deletion:cds_exon[117391845,117392120])	no_errors
ENSG00000231360	0	genome.wustl.edu	37	1	29843392	29843392	+	Silent	SNP	T	T	C	rs4995377	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29843392	29843392	T	C	SNP	ENSG00000231360	ENST00000455342	human	ensembl	57_37b	-1	known	silent	c.483	p.E161	0.000	NULL	NULL	-	
ENSG00000244935	0	genome.wustl.edu	37	X	39960876	39960876	+	RNA	SNP	T	C	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	39960876	39960876	T	C	SNP	ENSG00000244935	ENST00000500873	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950063	16950063	+	RNA	SNP	C	C	A	rs9329438	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950063	16950063	C	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245954	0	genome.wustl.edu	37	4	153022292	153022292	+	RNA	SNP	G	G	A	rs6535836	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	153022292	153022292	G	A	SNP	ENSG00000245954	ENST00000499452	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	
ENSG00000247526	0	genome.wustl.edu	37	13	21567680	21567712	+	RNA	DEL	ACATGGGCAGGCCATGTTGCCTGCCCATGTGGG	ACATGGGCAGGCCATGTTGCCTGCCCATGTGGG	-	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	ACATGGGCAGGCCATGTTGCCTGCCCATGTGGG	ACATGGGCAGGCCATGTTGCCTGCCCATGTGGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21567680	21567712	ACATGGGCAGGCCATGTTGCCTGCCCATGTGGG	-	DEL	ENSG00000247526	ENST00000501509	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.018:0.018:0.001:0.001:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.006:0.011:0.015:0.019:0.023:0.026:0.029:0.031:0.032:0.034:0.034:0.034	-	-	(deletion:rna[21564628,21567768])	no_errors
FLII	2314	genome.wustl.edu	37	17	18155034	18155034	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18155034	18155034	C	-	DEL	FLII	NM_002018	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1343	p.G448fs	1.000	superfamily_SSF55753	superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	(deletion:cds_exon[18154994,18155130])	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115930	8115931	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115930	8115931	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1279_1280	p.S428fs	0.998:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
HCG18	414777	genome.wustl.edu	37	6	30257497	30257497	+	RNA	SNP	C	C	G	rs115368375	byCluster;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30257497	30257497	C	G	SNP	HCG18	NR_024052	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	
KLC4	89953	genome.wustl.edu	37	6	43034120	43034120	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43034120	43034120	C	-	DEL	KLC4	NM_201523	human	genbank	57_37b	+1	validated	frame_shift_del	c.702	p.L235fs	1.000	superfamily_TPR-like,HMMPfam_Rab5-bind	superfamily_TPR-like,HMMPfam_Rab5-bind,HMMPfam_TPR_1,HMMSmart_SM00028,PatternScan_KINESIN_LIGHT	(deletion:cds_exon[43034044,43034263])	no_errors
LOC100132147	0	genome.wustl.edu	37	1	16862261	16862261	+	RNA	SNP	G	G	A	rs76121508	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16862261	16862261	G	A	SNP	LOC100132147	XR_038617	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.010	-	-	-	
LOC100132672	0	genome.wustl.edu	37	9	69501969	69501969	+	RNA	SNP	C	C	A	rs7040086	byCluster;by2Hit2Allele;byHapMap	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69501969	69501969	C	A	SNP	LOC100132672	XR_038504	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-	
LOC253724	253724	genome.wustl.edu	37	12	104283395	104283395	+	RNA	SNP	C	C	T	rs10778298	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104283395	104283395	C	T	SNP	LOC253724	NR_027249	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.002	-	-	-	
LOC392232	0	genome.wustl.edu	37	8	73121384	73121385	+	RNA	INS	-	-	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73121384	73121385	-	A	INS	LOC392232	XR_037363	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.862:0.820	-	-	-	no_errors
LOC84740	84740	genome.wustl.edu	37	4	7775587	7775587	+	RNA	SNP	T	C	C	rs4689858	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7775587	7775587	T	C	SNP	LOC84740	NR_026892	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
LRRC7	57554	genome.wustl.edu	37	1	70505003	70505003	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	70505003	70505003	T	C	SNP	LRRC7	NM_020794	human	genbank	57_37b	+1	validated	missense	c.3382	p.F1128L	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
MAP3K13	9175	genome.wustl.edu	37	3	185198098	185198098	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185198098	185198098	G	-	DEL	MAP3K13	NM_004721	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2580	p.G861fs	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[185198020,185198317])	no_errors
MLL3	58508	genome.wustl.edu	37	7	151948034	151948034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151948034	151948034	C	T	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.1639	p.E547K	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
NAGK	55577	genome.wustl.edu	37	2	71303763	71303763	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71303763	71303763	T	C	SNP	NAGK	NM_017567	human	genbank	57_37b	+1	validated	missense	c.697	p.Y233H	0.000	superfamily_SSF53067,HMMPfam_BcrAD_BadFG	superfamily_SSF53067,HMMPfam_BcrAD_BadFG	-	no_errors
OXCT2	64064	genome.wustl.edu	37	1	40235514	40235514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40235514	40235514	C	A	SNP	OXCT2	NM_022120	human	genbank	57_37b	-1	provisional	missense	c.1414	p.V472L	0.946	superfamily_SSF100950,HMMPfam_CoA_trans	superfamily_SSF100950,HMMPfam_CoA_trans,PatternScan_COA_TRANSF_1,PatternScan_COA_TRANSF_2	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67589230	67589230	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67589230	67589230	C	A	SNP	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	missense	c.1218	p.N406K	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
QSER1	79832	genome.wustl.edu	37	11	32953798	32953798	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32953798	32953798	G	A	SNP	QSER1	NM_001076786	human	genbank	57_37b	+1	provisional	missense	c.607	p.A203T	1.000	NULL	NULL	-	no_errors
RANBP9	10048	genome.wustl.edu	37	6	13659036	13659036	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	13659036	13659036	C	G	SNP	RANBP9	NM_005493	human	genbank	57_37b	-1	reviewed	missense	c.712	p.G238R	1.000	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_SPRY,HMMSmart_SM00449,HMMSmart_SM00667,HMMPfam_LisH,HMMSmart_SM00668,HMMSmart_SM00757,HMMPfam_RanBPM_CRA	-	no_errors
SLC13A2	9058	genome.wustl.edu	37	17	26820713	26820713	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26820713	26820713	C	A	SNP	SLC13A2	NM_003984	human	genbank	57_37b	+1	validated	missense	c.1003	p.L335I	0.506	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
SRP72	6731	genome.wustl.edu	37	4	57333838	57333838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57333838	57333838	G	A	SNP	SRP72	NM_006947	human	genbank	57_37b	+1	validated	missense	c.37	p.A13T	1.000	NULL	superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_SRP72	-	no_errors
STK16	8576	genome.wustl.edu	37	2	220113683	220113683	+	RNA	SNP	A	A	T	rs3731887	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220113683	220113683	A	T	SNP	STK16	NR_026909	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.009	-	-	-	
UBE2Z	65264	genome.wustl.edu	37	17	46988234	46988234	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0JG-01A-31D-A099-09	TCGA-AO-A0JG-10A-01D-A099-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46988234	46988234	A	G	SNP	UBE2Z	NM_023079	human	genbank	57_37b	+1	validated	missense	c.382	p.M128V	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors
