Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA13	154664	genome.wustl.edu	37	7	48285575	48285575	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48285575	48285575	A	G	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.1607	p.N536S	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
ABCF2	10061	genome.wustl.edu	37	7	150913108	150913108	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150913108	150913108	G	T	SNP	ABCF2	NM_005692	human	genbank	57_37b	-1	reviewed	missense	c.1346	p.P449H	1.000	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ACAN	176	genome.wustl.edu	37	15	89398206	89398206	+	Missense_Mutation	SNP	A	G	G	rs78770909	byCluster;by1000genomes	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89398206	89398206	A	G	SNP	ACAN	NM_013227	human	genbank	57_37b	+1	reviewed	missense	c.2390	p.E797G	0.146	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,PatternScan_IG_MHC,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	
ACCS	84680	genome.wustl.edu	37	11	44104793	44104793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	44104793	44104793	C	T	SNP	ACCS	NM_001127219	human	genbank	57_37b	+1	validated	missense	c.1186	p.L396F	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	PatternScan_AA_TRANSFER_CLASS_1,superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	-	no_errors
ADAM15	8751	genome.wustl.edu	37	1	155029738	155029740	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155029738	155029740	GCT	-	DEL	ADAM15	NM_207197	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1223_1225	p.C409in_frame_del	1.000:1.000:1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	(deletion:cds_exon[155029664,155029838])	no_errors
ADAMTS17	170691	genome.wustl.edu	37	15	100801809	100801809	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100801809	100801809	C	A	SNP	ADAMTS17	NM_139057	human	genbank	57_37b	-1	reviewed	silent	c.906	p.R302	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
AFF2	2334	genome.wustl.edu	37	X	148037858	148037858	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148037858	148037858	T	C	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	silent	c.2283	p.S761	0.961	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ALAS1	211	genome.wustl.edu	37	3	52239960	52239960	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52239960	52239960	G	C	SNP	ALAS1	NM_000688	human	genbank	57_37b	+1	validated	silent	c.906	p.G302	0.867	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
ALDH1L1	10840	genome.wustl.edu	37	3	125877412	125877412	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125877412	125877412	C	G	SNP	ALDH1L1	NM_012190	human	genbank	57_37b	-1	reviewed	missense	c.198	p.L66F	0.998	HMMPfam_Formyl_trans_N,superfamily_formyl_transf	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
APOB	338	genome.wustl.edu	37	2	21241873	21241873	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21241873	21241873	G	A	SNP	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	nonsense	c.3112	p.Q1038*	0.983	HMMPfam_DUF1081	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
ARID4A	5926	genome.wustl.edu	37	14	58831916	58831916	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58831916	58831916	C	G	SNP	ARID4A	NM_002892	human	genbank	57_37b	+1	reviewed	missense	c.3109	p.Q1037E	0.997	NULL	HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00298	-	no_errors
ASB15	142685	genome.wustl.edu	37	7	123256326	123256326	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	123256326	123256326	A	G	SNP	ASB15	NM_080928	human	genbank	57_37b	+1	validated	silent	c.159	p.Q53	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors
BAI1	575	genome.wustl.edu	37	8	143569787	143569787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143569787	143569787	T	G	SNP	BAI1	NM_001702	human	genbank	57_37b	+1	reviewed	missense	c.2371	p.W791G	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
BAZ1A	11177	genome.wustl.edu	37	14	35245596	35245596	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35245596	35245596	C	T	SNP	BAZ1A	NM_013448	human	genbank	57_37b	-1	validated	missense	c.2362	p.E788K	1.000	NULL	HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
BCKDK	10295	genome.wustl.edu	37	16	31122020	31122022	+	In_Frame_Del	DEL	CGG	CGG	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	CGG	CGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31122020	31122022	CGG	-	DEL	BCKDK	NM_005881	human	genbank	57_37b	+1	validated	in_frame_del	c.654_656	p.G219in_frame_del	0.970:1.000:1.000	HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	(deletion:cds_exon[31122009,31122082])	no_errors
C19orf43	79002	genome.wustl.edu	37	19	12841864	12841864	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12841864	12841864	C	T	SNP	C19orf43	NM_024038	human	genbank	57_37b	-1	predicted	missense	c.442	p.D148N	1.000	NULL	NULL	-	no_errors
C1orf103	55791	genome.wustl.edu	37	1	111492643	111492643	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111492643	111492643	C	G	SNP	C1orf103	NM_018372	human	genbank	57_37b	-1	validated	missense	c.1699	p.D567H	0.922	NULL	NULL	-	no_errors
C1orf26	54823	genome.wustl.edu	37	1	185135759	185135759	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185135759	185135759	C	A	SNP	C1orf26	NM_001105518	human	genbank	57_37b	+1	validated	nonsense	c.140	p.S47*	0.007	NULL	superfamily_SSF88723,HMMSmart_PINc	-	no_errors
C1orf26	54823	genome.wustl.edu	37	1	185153935	185153935	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185153935	185153935	A	T	SNP	C1orf26	NM_001105518	human	genbank	57_37b	+1	validated	missense	c.1301	p.K434M	0.999	HMMSmart_PINc,superfamily_SSF88723	HMMSmart_PINc,superfamily_SSF88723	-	no_errors
C21orf29	54084	genome.wustl.edu	37	21	45948407	45948407	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45948407	45948407	G	T	SNP	C21orf29	NM_144991	human	genbank	57_37b	-1	provisional	missense	c.850	p.Q284K	1.000	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP	-	no_errors
CBL	867	genome.wustl.edu	37	11	119142562	119142562	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119142562	119142562	G	A	SNP	CBL	NM_005188	human	genbank	57_37b	+1	reviewed	silent	c.561	p.A187	0.516	HMMPfam_Cbl_N2,superfamily_SSF47473	HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,superfamily_SSF47473,HMMPfam_Cbl_N3,superfamily_SSF55550,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_UBA	-	no_errors
CCHCR1	54535	genome.wustl.edu	37	6	31117874	31117874	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31117874	31117874	T	C	SNP	CCHCR1	NM_001105564	human	genbank	57_37b	-1	validated	missense	c.1331	p.H444R	0.590	HMMPfam_HCR	HMMPfam_HCR	-	no_errors
CDH19	28513	genome.wustl.edu	37	18	64197168	64197168	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	64197168	64197168	C	G	SNP	CDH19	NM_021153	human	genbank	57_37b	-1	reviewed	missense	c.1372	p.V458L	0.989	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
CENPF	1063	genome.wustl.edu	37	1	214819500	214819500	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214819500	214819500	G	A	SNP	CENPF	NM_016343	human	genbank	57_37b	+1	reviewed	missense	c.6587	p.R2196K	0.000	HMMPfam_Cenp-F_leu_zip	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors
COL22A1	169044	genome.wustl.edu	37	8	139734292	139734292	+	Missense_Mutation	SNP	G	G	A	rs114182767	by1000genomes	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	139734292	139734292	G	A	SNP	COL22A1	NM_152888	human	genbank	57_37b	-1	validated	missense	c.2288	p.P763L	0.693	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	
CRYBG3	131544	genome.wustl.edu	37	3	97598935	97598935	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97598935	97598935	T	C	SNP	CRYBG3	NM_153605	human	genbank	57_37b	+1	validated	missense	c.1151	p.V384A	1.000	superfamily_gamma-Crystallin-like,HMMSmart_SM00247,HMMPfam_Crystall	superfamily_gamma-Crystallin-like,HMMSmart_SM00247,HMMPfam_Crystall,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	-	no_errors
CYP26A1	1592	genome.wustl.edu	37	10	94834968	94834968	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	94834968	94834968	C	T	SNP	CYP26A1	NM_000783	human	genbank	57_37b	+1	reviewed	silent	c.768	p.C256	0.001	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
CYP4A11	1579	genome.wustl.edu	37	1	47407052	47407052	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	47407052	47407052	G	T	SNP	CYP4A11	NM_000778	human	genbank	57_37b	-1	reviewed	silent	c.54	p.I18	0.981	NULL	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DPEP3	64180	genome.wustl.edu	37	16	68010014	68010014	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68010014	68010014	G	C	SNP	DPEP3	NM_022357	human	genbank	57_37b	-1	reviewed	silent	c.1287	p.V429	1.000	superfamily_Metallo-dependent hydrolases,HMMPfam_Peptidase_M19	superfamily_Metallo-dependent hydrolases,HMMPfam_Peptidase_M19,PatternScan_RENAL_DIPEPTIDASE_1	-	no_errors
EHD2	30846	genome.wustl.edu	37	19	48229232	48229232	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48229232	48229232	C	G	SNP	EHD2	NM_014601	human	genbank	57_37b	+1	reviewed	missense	c.666	p.D222E	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors
EIF4G2	1982	genome.wustl.edu	37	11	10827548	10827548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10827548	10827548	G	A	SNP	EIF4G2	ENST00000429377	human	ensembl	57_37b	-1	known	missense	c.373	p.P125S	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_MIF4G,HMMSmart_MIF4G,HMMPfam_MA3,HMMSmart_MA3,HMMSmart_eIF5C,HMMPfam_W2	-	no_errors
ENTPD6	955	genome.wustl.edu	37	20	25198181	25198181	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25198181	25198181	G	A	SNP	ENTPD6	NM_001247	human	genbank	57_37b	+1	reviewed	missense	c.842	p.R281Q	0.925	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
EPS8L1	54869	genome.wustl.edu	37	19	55598981	55598981	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55598981	55598981	G	C	SNP	EPS8L1	NM_133180	human	genbank	57_37b	+1	reviewed	nonstop	c.2171	p.*724S	1.000	NULL	HMMSmart_SM00462,HMMPfam_PTB,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors
ERCC5	2073	genome.wustl.edu	37	13	103506681	103506681	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103506681	103506681	G	C	SNP	ERCC5	NM_000123	human	genbank	57_37b	+1	reviewed	missense	c.424	p.D142H	1.000	superfamily_PIN domain-like	HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279	-	no_errors
EXTL3	2137	genome.wustl.edu	37	8	28574385	28574386	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28574385	28574386	-	C	INS	EXTL3	NM_001440	human	genbank	57_37b	+1	provisional	frame_shift_ins	c.809_810	p.H271fs	1.000:0.986	HMMPfam_Exostosin	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-	no_errors
FANCD2	2177	genome.wustl.edu	37	3	10107101	10107101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10107101	10107101	C	T	SNP	FANCD2	NM_033084	human	genbank	57_37b	+1	reviewed	missense	c.2192	p.A731V	1.000	NULL	NULL	-	no_errors
FCAR	2204	genome.wustl.edu	37	19	55399642	55399642	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55399642	55399642	C	G	SNP	FCAR	NM_002000	human	genbank	57_37b	+1	reviewed	silent	c.630	p.A210	0.543	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
FZD3	7976	genome.wustl.edu	37	8	28413307	28413307	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28413307	28413307	C	A	SNP	FZD3	NM_017412	human	genbank	57_37b	+1	reviewed	missense	c.1606	p.L536I	1.000	NULL	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors
GABRR3	200959	genome.wustl.edu	37	3	97731370	97731370	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97731370	97731370	G	C	SNP	GABRR3	ENST00000472788	human	ensembl	57_37b	-1	known	missense	c.348	p.D116E	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GLA	2717	genome.wustl.edu	37	X	100658891	100658891	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100658891	100658891	C	G	SNP	GLA	NM_000169	human	genbank	57_37b	-1	reviewed	missense	c.277	p.D93H	1.000	superfamily_(Trans)glycosidases,HMMPfam_Melibiase,PatternScan_ALPHA_GALACTOSIDASE	superfamily_(Trans)glycosidases,HMMPfam_Melibiase,PatternScan_ALPHA_GALACTOSIDASE,superfamily_Glycosyl hydrolase domain	-	no_errors
GNPNAT1	64841	genome.wustl.edu	37	14	53251239	53251239	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53251239	53251239	G	C	SNP	GNPNAT1	NM_198066	human	genbank	57_37b	-1	validated	missense	c.130	p.L44V	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	-	no_errors
HECW1	23072	genome.wustl.edu	37	7	43548589	43548589	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43548589	43548589	G	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	silent	c.3888	p.S1296	0.585	superfamily_HECT,HMMSmart_HECTc	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
HEMGN	55363	genome.wustl.edu	37	9	100689708	100689708	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100689708	100689708	C	G	SNP	HEMGN	NM_018437	human	genbank	57_37b	-1	validated	missense	c.1413	p.E471D	0.039	NULL	NULL	-	no_errors
HIST2H2AC	8338	genome.wustl.edu	37	1	149858596	149858596	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149858596	149858596	C	A	SNP	HIST2H2AC	NM_003517	human	genbank	57_37b	+1	reviewed	silent	c.72	p.L24	0.863	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
HPDL	84842	genome.wustl.edu	37	1	45793708	45793708	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	45793708	45793708	G	C	SNP	HPDL	NM_032756	human	genbank	57_37b	+1	validated	missense	c.888	p.Q296H	0.956	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
HSPG2	3339	genome.wustl.edu	37	1	22179535	22179535	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22179535	22179535	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	silent	c.6468	p.I2156	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00406,superfamily_Immunoglobulin	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors
IFT122	55764	genome.wustl.edu	37	3	129225321	129225321	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129225321	129225321	C	G	SNP	IFT122	NM_052985	human	genbank	57_37b	+1	reviewed	missense	c.2873	p.A958G	0.956	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
IP6K3	117283	genome.wustl.edu	37	6	33693353	33693353	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33693353	33693353	A	T	SNP	IP6K3	NM_001142883	human	genbank	57_37b	-1	reviewed	missense	c.630	p.H210Q	0.000	superfamily_SAICAR synthase-like,HMMPfam_IPK	superfamily_SAICAR synthase-like,HMMPfam_IPK	-	no_errors
KCNA5	3741	genome.wustl.edu	37	12	5154568	5154568	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5154568	5154568	G	T	SNP	KCNA5	NM_002234	human	genbank	57_37b	+1	reviewed	missense	c.1255	p.G419W	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
KIAA1529	57653	genome.wustl.edu	37	9	100075583	100075583	+	Missense_Mutation	SNP	A	A	C	rs17855671	byHapMap	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100075583	100075583	A	C	SNP	KIAA1529	NM_020893	human	genbank	57_37b	+1	predicted	missense	c.964	p.S322R	0.000	NULL	NULL	-	
KRT222	125113	genome.wustl.edu	37	17	38816255	38816255	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38816255	38816255	C	G	SNP	KRT222	NM_152349	human	genbank	57_37b	-1	validated	missense	c.430	p.E144Q	1.000	HMMPfam_Filament,PatternScan_IF	HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMA4	3910	genome.wustl.edu	37	6	112437070	112437070	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	112437070	112437070	C	A	SNP	LAMA4	NM_001105206	human	genbank	57_37b	-1	reviewed	missense	c.5108	p.G1703V	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1,PatternScan_EGF_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
LAMP2	3920	genome.wustl.edu	37	X	119565295	119565295	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119565295	119565295	G	A	SNP	LAMP2	NM_002294	human	genbank	57_37b	-1	reviewed	silent	c.1116	p.D372	0.631	HMMPfam_Lamp,PatternScan_LAMP_2	PatternScan_LAMP_1,HMMPfam_Lamp,PatternScan_LAMP_2	-	no_errors
LAPTM4B	55353	genome.wustl.edu	37	8	98817648	98817648	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	98817648	98817648	C	G	SNP	LAPTM4B	NM_018407	human	genbank	57_37b	+1	validated	nonsense	c.440	p.S147*	0.996	HMMPfam_Mtp	HMMPfam_Mtp	-	no_errors
LARS	51520	genome.wustl.edu	37	5	145539015	145539015	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145539015	145539015	C	T	SNP	LARS	NM_020117	human	genbank	57_37b	-1	reviewed	silent	c.726	p.P242	0.975	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,HMMPfam_tRNA-synt_1g,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1	-	no_errors
LCP1	3936	genome.wustl.edu	37	13	46701779	46701779	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46701779	46701779	T	A	SNP	LCP1	NM_002298	human	genbank	57_37b	-1	reviewed	missense	c.1831	p.M611L	1.000	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2	-	no_errors
LOC100288117	0	genome.wustl.edu	37	21	20230273	20230273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	20230273	20230273	G	A	SNP	LOC100288117	XM_002343738	human	genbank	57_37b	-1	model	missense	c.34	p.P12S	0.988	NULL	NULL	-	no_errors
LOC100290187	0	genome.wustl.edu	37	X	1557729	1557729	+	Silent	SNP	G	A	A	rs28548896	byCluster	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1557729	1557729	G	A	SNP	LOC100290187	XM_002348240	human	genbank	57_37b	-1	model	silent	c.168	p.P56	0.020	NULL	NULL	-	
LOC388996	388996	genome.wustl.edu	37	2	91777889	91777889	+	RNA	SNP	G	G	T	rs13410511	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	91777889	91777889	G	T	SNP	LOC388996	XR_017571	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.959	-	-	-	
LOC644950	0	genome.wustl.edu	37	3	109128754	109128754	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	109128754	109128754	A	T	SNP	LOC644950	XM_001717224	human	genbank	57_37b	-1	model	missense	c.197	p.L66H	1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	-	no_errors
LRP1	4035	genome.wustl.edu	37	12	57592310	57592310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57592310	57592310	C	T	SNP	LRP1	NM_002332	human	genbank	57_37b	+1	reviewed	missense	c.9533	p.S3178F	0.996	superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
LSM4	25804	genome.wustl.edu	37	19	18426844	18426844	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18426844	18426844	T	-	DEL	LSM4	NM_012321	human	genbank	57_37b	-1	validated	frame_shift_del	c.35	p.N12fs	1.000	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	(deletion:cds_exon[18426834,18426875])	no_errors
MCM4	4173	genome.wustl.edu	37	8	48887464	48887464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48887464	48887464	G	A	SNP	MCM4	NM_005914	human	genbank	57_37b	+1	reviewed	silent	c.2307	p.L769	0.262	HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540	superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1	-	no_errors
MIR409	0	genome.wustl.edu	37	14	101531674	101531674	+	RNA	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101531674	101531674	C	G	SNP	MIR409	ENST00000362237	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
MMP17	4326	genome.wustl.edu	37	12	132325312	132325313	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	132325312	132325313	-	T	INS	MMP17	NM_016155	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.617_618	p.V207fs	0.994:0.372	"HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10"	"HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	-	no_errors
MUDENG	55745	genome.wustl.edu	37	14	57755684	57755684	+	RNA	SNP	T	T	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	57755684	57755684	T	A	SNP	MUDENG	NR_026895	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
MYB	4602	genome.wustl.edu	37	6	135520054	135520054	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	135520054	135520054	C	G	SNP	MYB	NM_001130173	human	genbank	57_37b	+1	reviewed	missense	c.1575	p.N525K	1.000	HMMPfam_Cmyb_C	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C	-	no_errors
MYO5B	4645	genome.wustl.edu	37	18	47500828	47500828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47500828	47500828	G	A	SNP	MYO5B	NM_001080467	human	genbank	57_37b	-1	reviewed	missense	c.1214	p.A405V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
NLRP5	126206	genome.wustl.edu	37	19	56565089	56565089	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56565089	56565089	C	A	SNP	NLRP5	NM_153447	human	genbank	57_37b	+1	reviewed	missense	c.3214	p.L1072I	0.267	superfamily_SSF52047	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT,superfamily_SSF52047	-	no_errors
OR10V1	390201	genome.wustl.edu	37	11	59481034	59481034	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59481034	59481034	G	C	SNP	OR10V1	NM_001005324	human	genbank	57_37b	-1	provisional	missense	c.285	p.I95M	0.003	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OVCH1	341350	genome.wustl.edu	37	12	29642562	29642562	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	29642562	29642562	G	A	SNP	OVCH1	NM_183378	human	genbank	57_37b	-1	validated	silent	c.693	p.D231	0.035	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
PDE4C	5143	genome.wustl.edu	37	19	18322580	18322580	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18322580	18322580	C	G	SNP	PDE4C	NM_000923	human	genbank	57_37b	-1	validated	missense	c.1780	p.E594Q	1.000	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PGLYRP3	114771	genome.wustl.edu	37	1	153271673	153271673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153271673	153271673	C	T	SNP	PGLYRP3	NM_052891	human	genbank	57_37b	-1	provisional	missense	c.763	p.G255R	1.000	HMMSmart_PGRP,superfamily_Amidase_2,HMMSmart_Ami_2,HMMPfam_Amidase_2	superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2	-	no_errors
PHKG2	5261	genome.wustl.edu	37	16	30762654	30762654	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30762654	30762654	G	-	DEL	PHKG2	ENST00000424889	human	ensembl	57_37b	+1	known	frame_shift_del	c.323	p.W108fs	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	(deletion:cds_exon[30762427,30762667])	no_errors
PIAS4	51588	genome.wustl.edu	37	19	4013263	4013263	+	Missense_Mutation	SNP	G	G	A	rs111928159	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4013263	4013263	G	A	SNP	PIAS4	NM_015897	human	genbank	57_37b	+1	provisional	missense	c.370	p.A124T	0.475	NULL	HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF57850,HMMPfam_zf-MIZ	-	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-
PLK2	10769	genome.wustl.edu	37	5	57750417	57750422	+	In_Frame_Del	DEL	CATCTT	CATCTT	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	CATCTT	CATCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	57750417	57750422	CATCTT	-	DEL	PLK2	NM_006622	human	genbank	57_37b	-1	validated	in_frame_del	c.2051_2046	p.QRC682in_frame_delH	1.000:1.000:0.999:1.000:1.000:1.000	superfamily_SSF82615	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF82615,HMMPfam_POLO_box	(deletion:cds_exon[57750410,57750601])	no_errors
PLK2	10769	genome.wustl.edu	37	5	57750425	57750425	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	57750425	57750425	T	A	SNP	PLK2	NM_006622	human	genbank	57_37b	-1	validated	missense	c.2043	p.L681F	1.000	superfamily_SSF82615	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF82615,HMMPfam_POLO_box	-	no_errors
PRTG	283659	genome.wustl.edu	37	15	56032653	56032653	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	56032653	56032653	T	A	SNP	PRTG	NM_173814	human	genbank	57_37b	-1	validated	missense	c.324	p.E108D	1.000	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
PSMD3	5709	genome.wustl.edu	37	17	38140605	38140605	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38140605	38140605	C	T	SNP	PSMD3	NM_002809	human	genbank	57_37b	+1	reviewed	silent	c.279	p.F93	0.835	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00088,HMMPfam_Rpn3_C"	-	no_errors
RAP2B	5912	genome.wustl.edu	37	3	152880727	152880727	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	152880727	152880727	A	G	SNP	RAP2B	NM_002886	human	genbank	57_37b	+1	reviewed	missense	c.245	p.Y82C	1.000	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	no_errors
RBPJL	11317	genome.wustl.edu	37	20	43942673	43942673	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43942673	43942673	A	T	SNP	RBPJL	NM_014276	human	genbank	57_37b	+1	reviewed	splice_site	c.758-2	e8-2	0.981	-	-	-	no_errors
RP1	6101	genome.wustl.edu	37	8	55537315	55537315	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	55537315	55537315	C	A	SNP	RP1	NM_006269	human	genbank	57_37b	+1	reviewed	missense	c.873	p.D291E	0.051	NULL	superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX	-	no_errors
RPL4	6124	genome.wustl.edu	37	15	66794137	66794137	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66794137	66794137	C	G	SNP	RPL4	NM_000968	human	genbank	57_37b	-1	reviewed	missense	c.535	p.D179H	1.000	superfamily_Ribosomal protein L4,HMMPfam_Ribosomal_L4	superfamily_Ribosomal protein L4,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Ribosomal_L4,PatternScan_RIBOSOMAL_L1E	-	no_errors
RSPH9	221421	genome.wustl.edu	37	6	43624412	43624412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43624412	43624412	G	A	SNP	RSPH9	NM_152732	human	genbank	57_37b	+1	provisional	missense	c.622	p.D208N	1.000	NULL	NULL	-	no_errors
SEC14L5	9717	genome.wustl.edu	37	16	5009367	5009367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	5009367	5009367	C	T	SNP	SEC14L5	NM_014692	human	genbank	57_37b	+1	validated	missense	c.43	p.P15S	0.999	NULL	HMMPfam_PRELI,superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576	-	no_errors
SLC13A1	6561	genome.wustl.edu	37	7	122759197	122759197	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122759197	122759197	A	T	SNP	SLC13A1	NM_022444	human	genbank	57_37b	-1	validated	missense	c.1450	p.L484I	0.999	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
SLC2A10	81031	genome.wustl.edu	37	20	45354529	45354529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45354529	45354529	T	C	SNP	SLC2A10	NM_030777	human	genbank	57_37b	+1	reviewed	missense	c.854	p.L285P	0.031	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SLC2A3	6515	genome.wustl.edu	37	12	8077007	8077007	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8077007	8077007	T	C	SNP	SLC2A3	NM_006931	human	genbank	57_37b	-1	validated	missense	c.1067	p.K356R	0.994	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SLCO2A1	6578	genome.wustl.edu	37	3	133661572	133661572	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133661572	133661572	G	T	SNP	SLCO2A1	NM_005630	human	genbank	57_37b	-1	validated	nonsense	c.1502	p.S501*	0.295	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors
SLCO2A1	6578	genome.wustl.edu	37	3	133667494	133667494	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	133667494	133667494	C	G	SNP	SLCO2A1	NM_005630	human	genbank	57_37b	-1	validated	missense	c.991	p.V331L	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
SP6	80320	genome.wustl.edu	37	17	45925604	45925604	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45925604	45925604	C	G	SNP	SP6	NM_199262	human	genbank	57_37b	-1	validated	silent	c.192	p.S64	0.005	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
STEAP4	79689	genome.wustl.edu	37	7	87910332	87910332	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87910332	87910332	C	G	SNP	STEAP4	NM_024636	human	genbank	57_37b	-1	validated	silent	c.1047	p.V349	0.002	HMMPfam_Ferric_reduct	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,PatternScan_HEMOPEXIN,HMMPfam_Ferric_reduct	-	no_errors
STK10	6793	genome.wustl.edu	37	5	171520913	171520913	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	171520913	171520913	T	A	SNP	STK10	NM_005990	human	genbank	57_37b	-1	reviewed	missense	c.1057	p.N353Y	0.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SULT1C3	442038	genome.wustl.edu	37	2	108881768	108881768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108881768	108881768	G	C	SNP	SULT1C3	NM_001008743	human	genbank	57_37b	+1	provisional	missense	c.876	p.K292N	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
TAS2R43	259289	genome.wustl.edu	37	12	11244067	11244068	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11244067	11244068	-	TT	INS	TAS2R43	NM_176884	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.762_761	p.S254fs	0.000:0.000	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
TGFB3	7043	genome.wustl.edu	37	14	76437505	76437505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	76437505	76437505	C	T	SNP	TGFB3	NM_003239	human	genbank	57_37b	-1	reviewed	missense	c.610	p.V204I	1.000	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577031	7577031	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577031	7577031	T	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.907	p.S303fs	1.000	NULL	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577019,7577155])	no_errors
TRIM67	440730	genome.wustl.edu	37	1	231344720	231344720	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231344720	231344720	C	G	SNP	TRIM67	NM_001004342	human	genbank	57_37b	+1	validated	missense	c.1847	p.S616C	1.000	superfamily_Concanavalin A-like lectins/glucanases	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449,HMMPfam_SPRY	-	no_errors
TRPV6	55503	genome.wustl.edu	37	7	142573589	142573589	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142573589	142573589	G	C	SNP	TRPV6	NM_018646	human	genbank	57_37b	-1	validated	silent	c.831	p.L277	0.901	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
UBA7	7318	genome.wustl.edu	37	3	49845531	49845531	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49845531	49845531	G	T	SNP	UBA7	NM_003335	human	genbank	57_37b	-1	reviewed	missense	c.2445	p.N815K	1.000	superfamily_MoeB,HMMPfam_UBACT	PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144837401	144837401	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144837401	144837401	G	T	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	missense	c.5281	p.V1761F	0.097	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
VPS8	23355	genome.wustl.edu	37	3	184577834	184577834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184577834	184577834	A	G	SNP	VPS8	NM_001009921	human	genbank	57_37b	+1	validated	missense	c.1205	p.Y402C	1.000	NULL	superfamily_WD40_like,superfamily_ARM-type_fold,superfamily_SSF57850,HMMSmart_RING	-	no_errors
WNT8B	7479	genome.wustl.edu	37	10	102239712	102239712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102239712	102239712	C	T	SNP	WNT8B	NM_003393	human	genbank	57_37b	+1	reviewed	missense	c.184	p.R62C	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
ZC3HC1	51530	genome.wustl.edu	37	7	129663533	129663533	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	129663533	129663533	G	A	SNP	ZC3HC1	NM_016478	human	genbank	57_37b	-1	validated	nonsense	c.1051	p.R351*	0.951	NULL	HMMPfam_zf-C3HC	-	no_errors
ZFP37	7539	genome.wustl.edu	37	9	115818872	115818872	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115818872	115818872	C	G	SNP	ZFP37	NM_003408	human	genbank	57_37b	-1	provisional	missense	c.97	p.E33Q	0.716	HMMSmart_KRAB	HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF512B	57473	genome.wustl.edu	37	20	62595990	62595990	+	Missense_Mutation	SNP	T	C	C	rs817326	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62595990	62595990	T	C	SNP	ZNF512B	NM_020713	human	genbank	57_37b	-1	provisional	missense	c.1114	p.M372V	0.000	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF526	116115	genome.wustl.edu	37	19	42730170	42730170	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42730170	42730170	C	G	SNP	ZNF526	NM_133444	human	genbank	57_37b	+1	provisional	missense	c.1615	p.Q539E	0.998	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF714	148206	genome.wustl.edu	37	19	21299680	21299680	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RE-01A-11W-A071-09	TCGA-B6-A0RE-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	21299680	21299680	G	C	SNP	ZNF714	ENST00000291770	human	ensembl	57_37b	+1	known	silent	c.210	p.V70	0.006	NULL	HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
