Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCB4	5244	genome.wustl.edu	37	7	87051523	87051523	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87051523	87051523	C	T	SNP	ABCB4	NM_018849	human	genbank	57_37b	-1	reviewed	missense	c.2230	p.D744N	0.398	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ABCC4	10257	genome.wustl.edu	37	13	95715010	95715010	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	95715010	95715010	G	T	SNP	ABCC4	NM_005845	human	genbank	57_37b	-1	reviewed	missense	c.3314	p.T1105K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ADRM1	11047	genome.wustl.edu	37	20	60878683	60878683	+	Missense_Mutation	SNP	A	A	G	rs11544169	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60878683	60878683	A	G	SNP	ADRM1	NM_007002	human	genbank	57_37b	+1	reviewed	missense	c.59	p.N20S	0.998	NULL	HMMPfam_ARM_1	-	
ANKAR	150709	genome.wustl.edu	37	2	190569785	190569785	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190569785	190569785	C	G	SNP	ANKAR	NM_144708	human	genbank	57_37b	+1	validated	nonsense	c.1532	p.S511*	0.997	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
APOB	338	genome.wustl.edu	37	2	21232581	21232585	+	Frame_Shift_Del	DEL	TTATC	TTATC	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	TTATC	TTATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21232581	21232585	TTATC	-	DEL	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.7159_7155	p.I2386fs	0.025:0.003:0.050:0.008:0.003	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	(deletion:cds_exon[21227952,21235523])	no_errors
APP	351	genome.wustl.edu	37	21	27354686	27354686	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	27354686	27354686	C	G	SNP	APP	NM_000484	human	genbank	57_37b	-1	reviewed	missense	c.1195	p.E399Q	1.000	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),PatternScan_A4_EXTRA,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein,HMMPfam_Beta-APP,HMMPfam_APP_amyloid,PatternScan_A4_INTRA	-	no_errors
ASAP2	8853	genome.wustl.edu	37	2	9531255	9531255	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	9531255	9531255	C	T	SNP	ASAP2	NM_003887	human	genbank	57_37b	+1	reviewed	silent	c.2448	p.S816	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMSmart_SM00105,HMMPfam_ArfGap,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
ATF7IP2	80063	genome.wustl.edu	37	16	10524750	10524750	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	10524750	10524750	C	T	SNP	ATF7IP2	NM_024997	human	genbank	57_37b	+1	validated	silent	c.273	p.F91	0.000	NULL	NULL	-	no_errors
B3GALNT1	8706	genome.wustl.edu	37	3	160804170	160804170	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160804170	160804170	C	G	SNP	B3GALNT1	NM_001038628	human	genbank	57_37b	-1	reviewed	missense	c.373	p.E125Q	0.717	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
C10orf12	26148	genome.wustl.edu	37	10	98743922	98743922	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98743922	98743922	G	C	SNP	C10orf12	NM_015652	human	genbank	57_37b	+1	predicted	missense	c.2775	p.L925F	1.000	NULL	NULL	-	no_errors
C13orf23	80209	genome.wustl.edu	37	13	39587225	39587225	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39587225	39587225	G	T	SNP	C13orf23	NM_025138	human	genbank	57_37b	-1	validated	missense	c.2164	p.P722T	0.069	NULL	NULL	-	no_errors
C18orf10	25941	genome.wustl.edu	37	18	34380248	34380248	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34380248	34380248	G	C	SNP	C18orf10	NM_015476	human	genbank	57_37b	-1	provisional	missense	c.409	p.H137D	1.000	NULL	NULL	-	no_errors
C19orf39	126074	genome.wustl.edu	37	19	11486225	11486225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11486225	11486225	C	T	SNP	C19orf39	NM_175871	human	genbank	57_37b	+1	validated	missense	c.223	p.L75F	0.962	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
C1orf65	164127	genome.wustl.edu	37	1	223568234	223568234	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223568234	223568234	G	A	SNP	C1orf65	NM_152610	human	genbank	57_37b	+1	validated	missense	c.1417	p.E473K	0.708	NULL	NULL	-	no_errors
CACNA1E	777	genome.wustl.edu	37	1	181726188	181726188	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181726188	181726188	G	T	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.4255	p.V1419L	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CAPN3	825	genome.wustl.edu	37	15	42646653	42646653	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42646653	42646653	T	A	SNP	CAPN3	NM_212465	human	genbank	57_37b	+1	reviewed	splice_site	c.48+2	e1+2	0.000	-	-	-	no_errors
CARD11	84433	genome.wustl.edu	37	7	2979469	2979469	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2979469	2979469	G	T	SNP	CARD11	NM_032415	human	genbank	57_37b	-1	validated	silent	c.778	p.R260	1.000	NULL	PatternScan_GUANYLATE_KINASE_1,superfamily_DEATH_like,HMMPfam_CARD,superfamily_PDZ,HMMSmart_PDZ,superfamily_SSF52540	-	no_errors
CCDC28B	79140	genome.wustl.edu	37	1	32669526	32669526	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32669526	32669526	G	T	SNP	CCDC28B	NM_024296	human	genbank	57_37b	+1	reviewed	missense	c.211	p.G71C	0.989	NULL	NULL	-	no_errors
CCDC53	51019	genome.wustl.edu	37	12	102437882	102437882	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102437882	102437882	C	A	SNP	CCDC53	NM_016053	human	genbank	57_37b	-1	validated	splice_site	c.324+1	e4+1	1.000	-	-	-	no_errors
CCT5	22948	genome.wustl.edu	37	5	10261724	10261724	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	10261724	10261724	C	T	SNP	CCT5	NM_012073	human	genbank	57_37b	+1	reviewed	missense	c.1046	p.T349I	1.000	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-	no_errors
CECR5	27440	genome.wustl.edu	37	22	17619469	17619469	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17619469	17619469	G	A	SNP	CECR5	NM_033070	human	genbank	57_37b	-1	validated	silent	c.906	p.A302	0.000	superfamily_HAD-like	superfamily_HAD-like	-	no_errors
CELF2	0	genome.wustl.edu	37	10	11299809	11299809	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	11299809	11299809	T	C	SNP	CELF2	NM_006561	human	genbank	57_37b	+1	reviewed	missense	c.512	p.L171P	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
CEP350	9857	genome.wustl.edu	37	1	179989393	179989393	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179989393	179989393	G	C	SNP	CEP350	NM_014810	human	genbank	57_37b	+1	reviewed	missense	c.2484	p.L828F	1.000	NULL	superfamily_SSF74924,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CIT	11113	genome.wustl.edu	37	12	120295450	120295450	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120295450	120295450	G	A	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	silent	c.291	p.F97	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
COL12A1	1303	genome.wustl.edu	37	6	75833788	75833788	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	75833788	75833788	T	C	SNP	COL12A1	NM_004370	human	genbank	57_37b	-1	reviewed	silent	c.6747	p.T2249	0.944	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors
COL12A1	1303	genome.wustl.edu	37	6	75893166	75893166	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	75893166	75893166	G	A	SNP	COL12A1	NM_004370	human	genbank	57_37b	-1	reviewed	silent	c.1491	p.F497	0.992	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
COL23A1	91522	genome.wustl.edu	37	5	177695751	177695751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177695751	177695751	G	A	SNP	COL23A1	NM_173465	human	genbank	57_37b	-1	validated	missense	c.475	p.P159S	1.000	NULL	HMMPfam_Collagen	-	no_errors
COL5A2	1290	genome.wustl.edu	37	2	189950468	189950468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189950468	189950468	C	T	SNP	COL5A2	NM_000393	human	genbank	57_37b	-1	reviewed	missense	c.721	p.E241K	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
COL7A1	1294	genome.wustl.edu	37	3	48612531	48612531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48612531	48612531	C	T	SNP	COL7A1	NM_000094	human	genbank	57_37b	-1	reviewed	missense	c.6245	p.G2082E	0.964	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
CPA1	1357	genome.wustl.edu	37	7	130023271	130023271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130023271	130023271	G	A	SNP	CPA1	NM_001868	human	genbank	57_37b	+1	reviewed	missense	c.523	p.D175N	1.000	superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1	superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
CPT2	1376	genome.wustl.edu	37	1	53676541	53676541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	53676541	53676541	C	T	SNP	CPT2	NM_000098	human	genbank	57_37b	+1	reviewed	missense	c.1195	p.P399S	0.995	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
CSE1L	1434	genome.wustl.edu	37	20	47691354	47691356	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47691354	47691356	GAG	-	DEL	CSE1L	NM_001316	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1099_1101	p.E368in_frame_del	1.000:1.000:1.000	superfamily_ARM repeat,HMMPfam_Cse1	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Cse1,HMMPfam_CAS_CSE1	(deletion:cds_exon[47691322,47691387])	no_errors
CTLA4	1493	genome.wustl.edu	37	2	204737449	204737449	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	204737449	204737449	C	G	SNP	CTLA4	NM_005214	human	genbank	57_37b	+1	reviewed	missense	c.586	p.L196V	1.000	NULL	superfamily_SSF48726,HMMSmart_IGv,HMMPfam_V-set	-	no_errors
CYP2S1	29785	genome.wustl.edu	37	19	41703830	41703830	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41703830	41703830	G	A	SNP	CYP2S1	NM_030622	human	genbank	57_37b	+1	reviewed	missense	c.490	p.E164K	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DAB2IP	153090	genome.wustl.edu	37	9	124522313	124522313	+	Missense_Mutation	SNP	C	C	G	rs34727342	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124522313	124522313	C	G	SNP	DAB2IP	NM_032552	human	genbank	57_37b	+1	validated	missense	c.681	p.F227L	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	
DCBLD2	131566	genome.wustl.edu	37	3	98518306	98518306	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	98518306	98518306	G	A	SNP	DCBLD2	NM_080927	human	genbank	57_37b	-1	validated	silent	c.2238	p.D746	0.035	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	-	no_errors
DDR2	4921	genome.wustl.edu	37	1	162724596	162724596	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162724596	162724596	G	T	SNP	DDR2	NM_001014796	human	genbank	57_37b	+1	reviewed	missense	c.368	p.S123I	1.000	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
DECR1	1666	genome.wustl.edu	37	8	91029554	91029554	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	91029554	91029554	G	C	SNP	DECR1	NM_001359	human	genbank	57_37b	+1	reviewed	missense	c.272	p.R91P	1.000	superfamily_NAD(P)-bd,HMMPfam_adh_short	PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	20996525	20996525	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20996525	20996525	G	A	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	silent	c.7539	p.D2513	0.055	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11672535	11672535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11672535	11672535	G	A	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	missense	c.7441	p.G2481S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
DNAJC27	51277	genome.wustl.edu	37	2	25180735	25180735	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25180735	25180735	C	A	SNP	DNAJC27	NM_016544	human	genbank	57_37b	-1	provisional	nonsense	c.349	p.E117*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176,superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors
DOCK8	81704	genome.wustl.edu	37	9	434905	434905	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	434905	434905	C	G	SNP	DOCK8	NM_203447	human	genbank	57_37b	+1	validated	missense	c.4805	p.A1602G	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41710062	41710062	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41710062	41710062	G	C	SNP	DSCAM	NM_001389	human	genbank	57_37b	-1	validated	silent	c.1749	p.L583	0.998	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
EBF2	64641	genome.wustl.edu	37	8	25715895	25715895	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25715895	25715895	A	C	SNP	EBF2	NM_022659	human	genbank	57_37b	-1	validated	missense	c.1468	p.L490V	1.000	NULL	PatternScan_COE,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMSmart_HLH	-	no_errors
ECT2	1894	genome.wustl.edu	37	3	172534566	172534566	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	172534566	172534566	G	A	SNP	ECT2	NM_018098	human	genbank	57_37b	+1	reviewed	missense	c.2501	p.R834K	0.997	NULL	superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like	-	no_errors
EIF3A	8661	genome.wustl.edu	37	10	120797885	120797885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	120797885	120797885	G	A	SNP	EIF3A	NM_003750	human	genbank	57_37b	-1	validated	missense	c.3593	p.S1198L	0.015	NULL	HMMPfam_PCI,HMMSmart_SM00088	-	no_errors
ENSG00000236553	0	genome.wustl.edu	37	21	17560190	17560190	+	Silent	SNP	T	T	C	rs79898246	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	17560190	17560190	T	C	SNP	ENSG00000236553	ENST00000425334	human	ensembl	57_37b	-1	known	silent	c.72	p.E24	0.004	NULL	NULL	-	
ENSG00000239811	0	genome.wustl.edu	37	6	160913973	160913973	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160913973	160913973	G	A	SNP	ENSG00000239811	ENST00000447327	human	ensembl	57_37b	-1	known	silent	c.231	p.C77	1.000	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1	-	no_errors
ENSG00000244855	0	genome.wustl.edu	37	9	88880691	88880691	+	RNA	SNP	A	A	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88880691	88880691	A	C	SNP	ENSG00000244855	ENST00000499730	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.004	-	-	-	no_errors
ENSG00000245894	0	genome.wustl.edu	37	6	31540473	31540473	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31540473	31540473	C	T	SNP	ENSG00000245894	ENST00000501884	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors
ENSG00000246942	0	genome.wustl.edu	37	8	103662321	103662321	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103662321	103662321	G	A	SNP	ENSG00000246942	ENST00000500115	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors
ENSG00000247770	0	genome.wustl.edu	37	1	11188191	11188191	+	RNA	SNP	A	A	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11188191	11188191	A	T	SNP	ENSG00000247770	ENST00000499978	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
ERCC6	2074	genome.wustl.edu	37	10	50667204	50667204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50667204	50667204	G	A	SNP	ERCC6	NM_000124	human	genbank	57_37b	-1	reviewed	missense	c.4139	p.S1380L	0.000	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
ERMAP	114625	genome.wustl.edu	37	1	43296636	43296636	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43296636	43296636	A	G	SNP	ERMAP	NM_001017922	human	genbank	57_37b	+1	reviewed	missense	c.283	p.K95E	0.280	HMMSmart_IG,superfamily_SSF48726,HMMPfam_V-set	HMMSmart_IG,superfamily_SSF48726,HMMPfam_V-set,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
ETFB	2109	genome.wustl.edu	37	19	51848506	51848506	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51848506	51848506	C	T	SNP	ETFB	NM_001014763	human	genbank	57_37b	-1	reviewed	missense	c.1000	p.E334K	0.988	superfamily_SSF52402	superfamily_SSF52402,HMMPfam_ETF,PatternScan_ETF_BETA	-	no_errors
EVPL	2125	genome.wustl.edu	37	17	74014634	74014634	+	Missense_Mutation	SNP	G	G	T	rs7218767	byCluster;byFrequency;by1000genomes	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74014634	74014634	G	T	SNP	EVPL	NM_001988	human	genbank	57_37b	-1	validated	missense	c.1332	p.D444E	0.759	superfamily_Spectrin repeat	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	
EXO1	9156	genome.wustl.edu	37	1	242016718	242016718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242016718	242016718	G	A	SNP	EXO1	NM_006027	human	genbank	57_37b	+1	reviewed	missense	c.340	p.E114K	1.000	superfamily_PIN domain-like	HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279	-	no_errors
FANK1	92565	genome.wustl.edu	37	10	127697019	127697019	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127697019	127697019	G	C	SNP	FANK1	NM_145235	human	genbank	57_37b	+1	validated	missense	c.749	p.R250T	0.999	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
FLJ43860	389690	genome.wustl.edu	37	8	142458053	142458053	+	Nonstop_Mutation	SNP	A	G	G	rs6578185	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	142458053	142458053	A	G	SNP	FLJ43860	NM_207414	human	genbank	57_37b	-1	validated	nonstop	c.2773	p.*925Q	0.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	
GBE1	2632	genome.wustl.edu	37	3	81584455	81584455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	81584455	81584455	C	T	SNP	GBE1	ENST00000264326	human	ensembl	57_37b	-1	known	missense	c.1825	p.E609K	1.000	superfamily_Glycosyl hydrolase domain,HMMPfam_Alpha-amylase_C	superfamily_E set domains,HMMPfam_CBM_48,superfamily_(Trans)glycosidases,HMMSmart_SM00642,HMMPfam_Alpha-amylase,superfamily_Glycosyl hydrolase domain,HMMPfam_Alpha-amylase_C	-	no_errors
GOLGA3	2802	genome.wustl.edu	37	12	133367817	133367817	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133367817	133367817	C	A	SNP	GOLGA3	NM_005895	human	genbank	57_37b	-1	reviewed	missense	c.2532	p.Q844H	1.000	superfamily_Prefoldin	superfamily_Spectrin repeat,superfamily_Prefoldin	-	no_errors
GOLGA4	2803	genome.wustl.edu	37	3	37357021	37357021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	37357021	37357021	G	A	SNP	GOLGA4	NM_002078	human	genbank	57_37b	+1	reviewed	missense	c.1345	p.E449K	1.000	NULL	superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain	-	no_errors
GTPBP1	9567	genome.wustl.edu	37	22	39111931	39111931	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39111931	39111931	G	C	SNP	GTPBP1	ENST00000418601	human	ensembl	57_37b	+1	known	nonstop	c.212	p.*71S	1.000	NULL	NULL	-	no_errors
HGSNAT	138050	genome.wustl.edu	37	8	43047544	43047544	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	43047544	43047544	G	A	SNP	HGSNAT	NM_152419	human	genbank	57_37b	+1	reviewed	missense	c.1348	p.D450N	0.000	HMMPfam_DUF2261	HMMPfam_DUF2261	-	no_errors
HIVEP1	3096	genome.wustl.edu	37	6	12121958	12121958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	12121958	12121958	G	A	SNP	HIVEP1	NM_002114	human	genbank	57_37b	+1	validated	missense	c.1930	p.A644T	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HPS3	84343	genome.wustl.edu	37	3	148871407	148871407	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148871407	148871407	G	C	SNP	HPS3	NM_032383	human	genbank	57_37b	+1	reviewed	missense	c.1372	p.E458Q	1.000	NULL	NULL	-	no_errors
HSD17B4	3295	genome.wustl.edu	37	5	118835111	118835111	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118835111	118835111	C	G	SNP	HSD17B4	NM_000414	human	genbank	57_37b	+1	reviewed	missense	c.1072	p.P358A	1.000	superfamily_SSF54637	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_SSF54637,HMMPfam_MaoC_dehydratas,superfamily_SCP2,HMMPfam_SCP2	-	no_errors
ITSN2	50618	genome.wustl.edu	37	2	24469072	24469072	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24469072	24469072	T	-	DEL	ITSN2	NM_006277	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3503	p.E1168fs	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_EF-hand,HMMSmart_SM00027,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	(deletion:cds_exon[24468998,24469189])	no_errors
JAK2	3717	genome.wustl.edu	37	9	5029900	5029900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5029900	5029900	G	T	SNP	JAK2	NM_004972	human	genbank	57_37b	+1	reviewed	missense	c.344	p.R115I	1.000	HMMSmart_B41	PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KCNK9	51305	genome.wustl.edu	37	8	140631236	140631255	+	Frame_Shift_Del	DEL	CTCGCCCAGGCTCTGGAACA	CTCGCCCAGGCTCTGGAACA	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	CTCGCCCAGGCTCTGGAACA	CTCGCCCAGGCTCTGGAACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	140631236	140631255	CTCGCCCAGGCTCTGGAACA	-	DEL	KCNK9	NM_016601	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.390_371	p.M124fs	1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_SSF81324,HMMPfam_Ion_trans_2	superfamily_SSF81324,HMMPfam_Ion_trans_2	(deletion:cds_exon[140630501,140631342])	no_errors
KLRC3	3823	genome.wustl.edu	37	12	10570980	10570980	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10570980	10570980	G	C	SNP	KLRC3	NM_007333	human	genbank	57_37b	-1	reviewed	missense	c.449	p.S150C	0.006	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
KRTAP5-10	387273	genome.wustl.edu	37	11	71276947	71276947	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71276947	71276947	G	A	SNP	KRTAP5-10	NM_001012710	human	genbank	57_37b	+1	validated	missense	c.314	p.G105D	0.904	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60900388	60900388	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60900388	60900388	C	T	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.5513	p.R1838Q	0.031	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
LAYN	143903	genome.wustl.edu	37	11	111414805	111414805	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111414805	111414805	G	C	SNP	LAYN	NM_178834	human	genbank	57_37b	+1	provisional	silent	c.243	p.L81	0.992	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	-	no_errors
LOC100129085	0	genome.wustl.edu	37	19	38184299	38184299	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38184299	38184299	G	C	SNP	LOC100129085	XM_001720598	human	genbank	57_37b	-1	model	missense	c.167	p.S56C	0.275	NULL	NULL	-	no_errors
LOC100289027	0	genome.wustl.edu	37	9	45363578	45363578	+	Missense_Mutation	SNP	C	C	T	rs28520514	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	45363578	45363578	C	T	SNP	LOC100289027	XM_002344254	human	genbank	57_37b	+1	model	missense	c.98	p.P33L	0.077	HMMPfam_CDK2AP	HMMPfam_CDK2AP	-	
LOC100291393	0	genome.wustl.edu	37	19	374492	374492	+	Silent	SNP	G	G	C	rs10410345	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	374492	374492	G	C	SNP	LOC100291393	XM_002347883	human	genbank	57_37b	+1	model	silent	c.615	p.A205	0.001	NULL	NULL	-	
LOC728416	728416	genome.wustl.edu	37	7	56804101	56804101	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	56804101	56804101	A	C	SNP	LOC728416	XM_001127426	human	genbank	57_37b	-1	model	missense	c.183	p.F61L	0.064	HMMPfam_TMA7	HMMPfam_TMA7	-	no_errors
LOC728416	728416	genome.wustl.edu	37	7	56804239	56804239	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	56804239	56804239	G	C	SNP	LOC728416	XM_001127426	human	genbank	57_37b	-1	model	silent	c.45	p.P15	0.359	HMMPfam_TMA7	HMMPfam_TMA7	-	no_errors
LPO	4025	genome.wustl.edu	37	17	56329630	56329630	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56329630	56329630	A	T	SNP	LPO	NM_006151	human	genbank	57_37b	+1	reviewed	nonsense	c.868	p.K290*	0.000	superfamily_Peroxidase_super,HMMPfam_An_peroxidase	PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase	-	no_errors
LRCH1	23143	genome.wustl.edu	37	13	47262104	47262104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	47262104	47262104	G	A	SNP	LRCH1	NM_015116	human	genbank	57_37b	+1	validated	missense	c.940	p.V314M	0.630	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors
LRRIQ4	344657	genome.wustl.edu	37	3	169539922	169539922	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	169539922	169539922	G	C	SNP	LRRIQ4	NM_001080460	human	genbank	57_37b	+1	provisional	missense	c.213	p.K71N	0.005	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
MAK	4117	genome.wustl.edu	37	6	10802211	10802211	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10802211	10802211	G	C	SNP	MAK	NM_005906	human	genbank	57_37b	-1	reviewed	missense	c.745	p.L249V	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAP7D2	256714	genome.wustl.edu	37	X	20030640	20030640	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	20030640	20030640	C	T	SNP	MAP7D2	NM_152780	human	genbank	57_37b	-1	validated	silent	c.1776	p.L592	1.000	NULL	HMMPfam_MAP7	-	no_errors
MIR548I2	0	genome.wustl.edu	37	4	9557896	9557896	+	RNA	SNP	T	T	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	9557896	9557896	T	G	SNP	MIR548I2	ENST00000408348	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.164	-	-	-	no_errors
MPHOSPH8	54737	genome.wustl.edu	37	13	20233249	20233249	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20233249	20233249	C	A	SNP	MPHOSPH8	NM_017520	human	genbank	57_37b	+1	validated	missense	c.1691	p.A564E	0.008	superfamily_Ankyrin repeat	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
MTTP	4547	genome.wustl.edu	37	4	100521863	100521863	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100521863	100521863	C	G	SNP	MTTP	NM_000253	human	genbank	57_37b	+1	reviewed	silent	c.1209	p.P403	0.465	HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical	superfamily_Lipid_transp_b-sht_shell,HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9067623	9067623	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9067623	9067623	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.19823	p.S6608L	0.004	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NCAM1	4684	genome.wustl.edu	37	11	113140962	113140962	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	113140962	113140962	C	A	SNP	NCAM1	ENST00000433634	human	ensembl	57_37b	+1	known	silent	c.549	p.L183	1.000	NULL	HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
NDUFA2	4695	genome.wustl.edu	37	5	140025248	140025248	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140025248	140025248	G	C	SNP	NDUFA2	NM_002488	human	genbank	57_37b	-1	provisional	missense	c.224	p.T75R	1.000	HMMPfam_L51_S25_CI-B8	HMMPfam_L51_S25_CI-B8	-	no_errors
OR10V1	390201	genome.wustl.edu	37	11	59480614	59480614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59480614	59480614	G	A	SNP	OR10V1	NM_001005324	human	genbank	57_37b	-1	provisional	silent	c.705	p.R235	0.063	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR12D3	81797	genome.wustl.edu	37	6	29342398	29342398	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29342398	29342398	G	C	SNP	OR12D3	NM_030959	human	genbank	57_37b	-1	provisional	missense	c.667	p.L223V	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR5M3	219482	genome.wustl.edu	37	11	56237193	56237193	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56237193	56237193	G	C	SNP	OR5M3	NM_001004742	human	genbank	57_37b	-1	provisional	missense	c.781	p.P261A	0.422	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6K2	81448	genome.wustl.edu	37	1	158670357	158670357	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158670357	158670357	A	G	SNP	OR6K2	NM_001005279	human	genbank	57_37b	-1	provisional	missense	c.86	p.V29A	0.767	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
PAG1	55824	genome.wustl.edu	37	8	81897162	81897162	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	81897162	81897162	A	G	SNP	PAG1	NM_018440	human	genbank	57_37b	-1	reviewed	missense	c.725	p.V242A	0.015	NULL	NULL	-	no_errors
PAM	5066	genome.wustl.edu	37	5	102237088	102237088	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	102237088	102237088	G	C	SNP	PAM	NM_000919	human	genbank	57_37b	+1	reviewed	missense	c.239	p.R80P	0.987	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
PAPPA2	60676	genome.wustl.edu	37	1	176811528	176811528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	176811528	176811528	G	A	SNP	PAPPA2	NM_020318	human	genbank	57_37b	+1	validated	missense	c.5314	p.A1772T	1.000	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00004,HMMPfam_Notch,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,PatternScan_N6_MTASE,superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Notch domain"	-	no_errors
PASD1	139135	genome.wustl.edu	37	X	150780207	150780207	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150780207	150780207	T	A	SNP	PASD1	NM_173493	human	genbank	57_37b	+1	validated	silent	c.189	p.S63	0.001	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
PCDHGA9	56107	genome.wustl.edu	37	5	140783647	140783647	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140783647	140783647	C	T	SNP	PCDHGA9	NM_018921	human	genbank	57_37b	+1	reviewed	silent	c.1128	p.S376	0.003	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1	-	no_errors
PDP1	54704	genome.wustl.edu	37	8	94934414	94934414	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	94934414	94934414	C	T	SNP	PDP1	NM_018444	human	genbank	57_37b	+1	reviewed	nonsense	c.127	p.R43*	0.678	NULL	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C	-	no_errors
PGCP	10404	genome.wustl.edu	37	8	97797310	97797310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	97797310	97797310	G	C	SNP	PGCP	NM_016134	human	genbank	57_37b	+1	provisional	missense	c.185	p.R62T	1.000	NULL	superfamily_SSF53187,HMMPfam_Peptidase_M28	-	no_errors
PHF15	23338	genome.wustl.edu	37	5	133901983	133901983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133901983	133901983	G	A	SNP	PHF15	NM_015288	human	genbank	57_37b	+1	provisional	missense	c.1147	p.A383T	0.934	NULL	HMMPfam_EPL1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PHF8	23133	genome.wustl.edu	37	X	54069105	54069105	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54069105	54069105	G	A	SNP	PHF8	NM_015107	human	genbank	57_37b	-1	validated	silent	c.57	p.F19	1.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors
PHLDB1	23187	genome.wustl.edu	37	11	118520793	118520793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118520793	118520793	G	A	SNP	PHLDB1	NM_001144758	human	genbank	57_37b	+1	validated	silent	c.3666	p.L1222	1.000	NULL	superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PKD1L1	168507	genome.wustl.edu	37	7	47897385	47897385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47897385	47897385	G	A	SNP	PKD1L1	NM_138295	human	genbank	57_37b	-1	reviewed	missense	c.4408	p.R1470W	0.330	NULL	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel	-	no_errors
PLCB1	23236	genome.wustl.edu	37	20	8769095	8769095	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	8769095	8769095	G	C	SNP	PLCB1	NM_015192	human	genbank	57_37b	+1	reviewed	splice_site	c.3112-1	e28-1	1.000	-	-	-	no_errors
PLEKHA4	57664	genome.wustl.edu	37	19	49364911	49364911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49364911	49364911	G	A	SNP	PLEKHA4	NM_020904	human	genbank	57_37b	-1	validated	silent	c.231	p.F77	0.995	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PRAME	23532	genome.wustl.edu	37	22	22892667	22892667	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22892667	22892667	G	C	SNP	PRAME	NM_006115	human	genbank	57_37b	-1	reviewed	nonsense	c.434	p.S145*	0.002	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
PRKACA	5566	genome.wustl.edu	37	19	14213652	14213652	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14213652	14213652	G	A	SNP	PRKACA	NM_002730	human	genbank	57_37b	-1	reviewed	silent	c.312	p.L104	0.985	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133	-	no_errors
QSER1	79832	genome.wustl.edu	37	11	32976846	32976846	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32976846	32976846	C	A	SNP	QSER1	NM_001076786	human	genbank	57_37b	+1	provisional	missense	c.4118	p.A1373D	1.000	NULL	NULL	-	no_errors
RAB11FIP4	84440	genome.wustl.edu	37	17	29858682	29858682	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29858682	29858682	C	T	SNP	RAB11FIP4	NM_032932	human	genbank	57_37b	+1	validated	nonsense	c.1846	p.Q616*	1.000	HMMPfam_RBD-FIP	superfamily_EF-hand,HMMPfam_RBD-FIP	-	no_errors
RAI2	10742	genome.wustl.edu	37	X	17818739	17818739	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	17818739	17818739	T	G	SNP	RAI2	NM_021785	human	genbank	57_37b	-1	reviewed	missense	c.1392	p.K464N	1.000	NULL	NULL	-	no_errors
RALBP1	10928	genome.wustl.edu	37	18	9533749	9533749	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	9533749	9533749	C	T	SNP	RALBP1	NM_006788	human	genbank	57_37b	+1	validated	silent	c.1626	p.S542	0.378	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
RCBTB1	55213	genome.wustl.edu	37	13	50141327	50141327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	50141327	50141327	G	A	SNP	RCBTB1	NM_018191	human	genbank	57_37b	-1	reviewed	missense	c.89	p.S30L	1.000	superfamily_RCC1/BLIP-II	PatternScan_RCC1_1,superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	-	no_errors
RGPD4	285190	genome.wustl.edu	37	2	108487659	108487659	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108487659	108487659	C	T	SNP	RGPD4	NM_182588	human	genbank	57_37b	+1	validated	silent	c.3199	p.L1067	1.000	superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
RNF138	51444	genome.wustl.edu	37	18	29691779	29691779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29691779	29691779	G	A	SNP	RNF138	NM_016271	human	genbank	57_37b	+1	reviewed	missense	c.173	p.R58H	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
RXFP4	339403	genome.wustl.edu	37	1	155912498	155912498	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155912498	155912498	C	A	SNP	RXFP4	NM_181885	human	genbank	57_37b	+1	validated	missense	c.998	p.P333H	0.007	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
S100A6	6277	genome.wustl.edu	37	1	153507273	153507273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153507273	153507273	C	T	SNP	S100A6	NM_014624	human	genbank	57_37b	-1	reviewed	missense	c.172	p.E58K	0.971	superfamily_SSF47473,HMMPfam_efhand,PatternScan_S100_CABP	superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
SBDS	51119	genome.wustl.edu	37	7	66453378	66453380	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	66453378	66453380	CTT	-	DEL	SBDS	NM_016038	human	genbank	57_37b	-1	reviewed	in_frame_del	c.733_731	p.E244in_frame_del	1.000:1.000:1.000	NULL	superfamily_FYSH domain,HMMPfam_SBDS,PatternScan_UPF0023,superfamily_Hypothetical protein AF0491 middle domain,HMMPfam_SBDS_C	(deletion:cds_exon[66453358,66453486])	no_errors
SBF2	81846	genome.wustl.edu	37	11	10024173	10024173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10024173	10024173	G	A	SNP	SBF2	NM_030962	human	genbank	57_37b	-1	reviewed	missense	c.683	p.S228F	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
SERPINA7	6906	genome.wustl.edu	37	X	105278294	105278294	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105278294	105278294	G	A	SNP	SERPINA7	NM_000354	human	genbank	57_37b	-1	validated	nonsense	c.976	p.Q326*	0.000	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
SFRS15	57466	genome.wustl.edu	37	21	33073365	33073365	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33073365	33073365	T	C	SNP	SFRS15	NM_020706	human	genbank	57_37b	-1	reviewed	silent	c.720	p.Q240	0.867	NULL	superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
SH3BP4	23677	genome.wustl.edu	37	2	235951351	235951351	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	235951351	235951351	G	A	SNP	SH3BP4	NM_014521	human	genbank	57_37b	+1	reviewed	silent	c.1938	p.P646	0.003	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
SLC12A8	84561	genome.wustl.edu	37	3	124826851	124826851	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124826851	124826851	C	T	SNP	SLC12A8	NM_024628	human	genbank	57_37b	-1	validated	silent	c.1179	p.L393	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC17A6	57084	genome.wustl.edu	37	11	22397543	22397543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	22397543	22397543	C	T	SNP	SLC17A6	NM_020346	human	genbank	57_37b	+1	validated	missense	c.1190	p.A397V	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
SMYD4	114826	genome.wustl.edu	37	17	1703215	1703215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1703215	1703215	C	T	SNP	SMYD4	NM_052928	human	genbank	57_37b	-1	validated	silent	c.1473	p.A491	0.983	superfamily_SET domain	superfamily_TPR-like,superfamily_SET domain,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
SPATA2	9825	genome.wustl.edu	37	20	48523073	48523073	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48523073	48523073	C	G	SNP	SPATA2	NM_001135773	human	genbank	57_37b	-1	validated	missense	c.646	p.E216Q	0.995	NULL	NULL	-	no_errors
STX17	55014	genome.wustl.edu	37	9	102713416	102713416	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102713416	102713416	G	A	SNP	STX17	NM_017919	human	genbank	57_37b	+1	validated	silent	c.264	p.K88	1.000	superfamily_t-snare	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
STXBP1	6812	genome.wustl.edu	37	9	130423461	130423461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130423461	130423461	G	A	SNP	STXBP1	NM_003165	human	genbank	57_37b	+1	reviewed	missense	c.406	p.A136T	1.000	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_errors
SYNE1	23345	genome.wustl.edu	37	6	152655294	152655294	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152655294	152655294	T	A	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.12643	p.N4215Y	0.892	HMMPfam_Spectrin,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
TCHH	7062	genome.wustl.edu	37	1	152082392	152082392	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152082392	152082392	T	C	SNP	TCHH	NM_007113	human	genbank	57_37b	-1	provisional	missense	c.3301	p.R1101G	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
TEX15	56154	genome.wustl.edu	37	8	30700081	30700081	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	30700081	30700081	G	A	SNP	TEX15	NM_031271	human	genbank	57_37b	-1	validated	silent	c.6453	p.C2151	0.007	NULL	NULL	-	no_errors
TG	7038	genome.wustl.edu	37	8	133899016	133899016	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133899016	133899016	C	G	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	missense	c.1399	p.L467V	1.000	NULL	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
TIAM1	7074	genome.wustl.edu	37	21	32492859	32492859	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	32492859	32492859	G	A	SNP	TIAM1	NM_003253	human	genbank	57_37b	-1	validated	nonsense	c.4603	p.Q1535*	0.992	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1	-	no_errors
TMCC1	23023	genome.wustl.edu	37	3	129389511	129389511	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129389511	129389511	G	C	SNP	TMCC1	NM_001017395	human	genbank	57_37b	-1	validated	missense	c.1173	p.D391E	1.000	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	no_errors
TMEM50A	23585	genome.wustl.edu	37	1	25667009	25667009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	25667009	25667009	C	T	SNP	TMEM50A	NM_014313	human	genbank	57_37b	+1	reviewed	missense	c.32	p.S11L	1.000	HMMPfam_UPF0220	HMMPfam_UPF0220	-	no_errors
TNPO3	23534	genome.wustl.edu	37	7	128658066	128658066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128658066	128658066	G	A	SNP	TNPO3	NM_012470	human	genbank	57_37b	-1	validated	missense	c.266	p.S89L	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_Xpo1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577129	7577129	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577129	7577129	A	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.809	p.F270S	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRIM10	10107	genome.wustl.edu	37	6	30124770	30124770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30124770	30124770	G	A	SNP	TRIM10	NM_006778	human	genbank	57_37b	-1	validated	missense	c.841	p.R281W	0.999	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMSmart_SM00449,HMMPfam_SPRY	-	no_errors
TRIM13	10206	genome.wustl.edu	37	13	50587274	50587275	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	50587274	50587275	TT	-	DEL	TRIM13	NM_001007278	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1207_1208	p.F403fs	1.000:1.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57845	(deletion:cds_exon[50586071,50587300])	no_errors
TRIM21	6737	genome.wustl.edu	37	11	4411449	4411449	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4411449	4411449	C	T	SNP	TRIM21	NM_003141	human	genbank	57_37b	-1	reviewed	missense	c.191	p.R64Q	0.008	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
TRIO	7204	genome.wustl.edu	37	5	14399176	14399176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14399176	14399176	G	A	SNP	TRIO	NM_007118	human	genbank	57_37b	+1	validated	silent	c.4611	p.L1537	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TRIP13	9319	genome.wustl.edu	37	5	914588	914588	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	914588	914588	C	G	SNP	TRIP13	NM_004237	human	genbank	57_37b	+1	reviewed	missense	c.1029	p.I343M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
TRPV6	55503	genome.wustl.edu	37	7	142573242	142573242	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142573242	142573242	G	C	SNP	TRPV6	NM_018646	human	genbank	57_37b	-1	validated	silent	c.1101	p.L367	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179612700	179612700	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179612700	179612700	C	T	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	silent	c.14427	p.L4809	0.000	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
UBTD1	80019	genome.wustl.edu	37	10	99330208	99330208	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99330208	99330208	C	T	SNP	UBTD1	NM_024954	human	genbank	57_37b	+1	provisional	silent	c.612	p.L204	1.000	superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin	PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin	-	no_errors
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452800	100452800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100452800	100452800	G	A	SNP	UHRF1BP1L	NM_015054	human	genbank	57_37b	-1	validated	missense	c.2255	p.S752L	0.997	NULL	NULL	-	no_errors
WDR49	151790	genome.wustl.edu	37	3	167277905	167277905	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	167277905	167277905	G	-	DEL	WDR49	NM_178824	human	genbank	57_37b	-1	provisional	frame_shift_del	c.598	p.D201fs	0.992	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[167277852,167278016])	no_errors
ZCCHC13	389874	genome.wustl.edu	37	X	73524431	73524431	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73524431	73524431	G	A	SNP	ZCCHC13	NM_203303	human	genbank	57_37b	+1	validated	silent	c.330	p.Q110	1.000	superfamily_SSF57756,HMMPfam_zf-CCHC	HMMSmart_ZnF_C2HC,HMMPfam_zf-CCHC,superfamily_SSF57756	-	no_errors
ZFHX4	79776	genome.wustl.edu	37	8	77764171	77764174	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77764171	77764174	AAAA	-	DEL	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	frame_shift_del	c.4879_4882	p.K1627fs	1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	(deletion:cds_exon[77763122,77768536])	no_errors
ZNF236	7776	genome.wustl.edu	37	18	74625817	74625817	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	74625817	74625817	C	T	SNP	ZNF236	NM_007345	human	genbank	57_37b	+1	validated	silent	c.3018	p.S1006	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF253	56242	genome.wustl.edu	37	19	20002371	20002371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20002371	20002371	C	T	SNP	ZNF253	NM_021047	human	genbank	57_37b	+1	provisional	silent	c.315	p.C105	0.033	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF429	353088	genome.wustl.edu	37	19	21719844	21719844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	21719844	21719844	G	A	SNP	ZNF429	NM_001001415	human	genbank	57_37b	+1	provisional	missense	c.989	p.S330N	0.003	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF440	126070	genome.wustl.edu	37	19	11943231	11943231	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11943231	11943231	C	G	SNP	ZNF440	NM_152357	human	genbank	57_37b	+1	validated	missense	c.1240	p.H414D	0.776	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF510	22869	genome.wustl.edu	37	9	99521783	99521783	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	99521783	99521783	C	T	SNP	ZNF510	NM_014930	human	genbank	57_37b	-1	provisional	silent	c.1329	p.Q443	0.017	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF562	54811	genome.wustl.edu	37	19	9764242	9764242	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9764242	9764242	G	C	SNP	ZNF562	NM_001130031	human	genbank	57_37b	-1	validated	missense	c.664	p.H222D	0.064	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF578	147660	genome.wustl.edu	37	19	53014007	53014007	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53014007	53014007	C	A	SNP	ZNF578	NM_001099694	human	genbank	57_37b	+1	validated	missense	c.373	p.H125N	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors
ZNF658	26149	genome.wustl.edu	37	9	40774338	40774338	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40774338	40774338	T	A	SNP	ZNF658	NM_033160	human	genbank	57_37b	-1	validated	missense	c.937	p.T313S	0.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF776	284309	genome.wustl.edu	37	19	58265573	58265573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AW-01A-11W-A071-09	TCGA-BH-A0AW-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58265573	58265573	C	T	SNP	ZNF776	NM_173632	human	genbank	57_37b	+1	validated	missense	c.1075	p.H359Y	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
