Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA12	26154	genome.wustl.edu	37	2	215843723	215843723	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	215843723	215843723	G	A	SNP	ABCA12	NM_173076	human	genbank	57_37b	-1	reviewed	silent	c.4782	p.A1594	0.065	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ATP4A	495	genome.wustl.edu	37	19	36051382	36051382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36051382	36051382	C	T	SNP	ATP4A	NM_000704	human	genbank	57_37b	-1	reviewed	missense	c.670	p.V224M	1.000	superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653	HMMPfam_H-K_ATPase_N,HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors
C1orf86	199990	genome.wustl.edu	37	1	2125495	2125495	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2125495	2125495	A	G	SNP	C1orf86	NM_182533	human	genbank	57_37b	-1	validated	missense	c.140	p.V47A	0.000	NULL	NULL	-	no_errors
CD68	968	genome.wustl.edu	37	17	7484092	7484092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7484092	7484092	C	G	SNP	CD68	NM_001251	human	genbank	57_37b	+1	reviewed	missense	c.751	p.H251D	0.000	HMMPfam_Lamp	HMMPfam_Lamp,PatternScan_LAMP_2	-	no_errors
CDH8	1006	genome.wustl.edu	37	16	61689592	61689592	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	61689592	61689592	C	G	SNP	CDH8	NM_001796	human	genbank	57_37b	-1	reviewed	missense	c.1688	p.G563A	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
CLIP1	6249	genome.wustl.edu	37	12	122825568	122825568	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122825568	122825568	A	G	SNP	CLIP1	NM_002956	human	genbank	57_37b	-1	validated	missense	c.2150	p.M717T	1.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CLYBL	171425	genome.wustl.edu	37	13	100518497	100518497	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	100518497	100518497	C	G	SNP	CLYBL	ENST00000339105	human	ensembl	57_37b	+1	known	missense	c.638	p.A213G	1.000	superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_HpcH_HpaI	superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_HpcH_HpaI	-	no_errors
CP110	9738	genome.wustl.edu	37	16	19554266	19554266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19554266	19554266	C	A	SNP	CP110	NM_014711	human	genbank	57_37b	+1	validated	missense	c.2434	p.R812S	1.000	NULL	NULL	-	no_errors
CPT1A	1374	genome.wustl.edu	37	11	68579905	68579905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68579905	68579905	G	A	SNP	CPT1A	NM_001876	human	genbank	57_37b	-1	reviewed	missense	c.281	p.A94V	0.984	NULL	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors
CUL5	8065	genome.wustl.edu	37	11	107925435	107925435	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	107925435	107925435	A	G	SNP	CUL5	NM_003478	human	genbank	57_37b	+1	validated	silent	c.615	p.A205	0.999	superfamily_Cullin repeat,HMMPfam_Cullin	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
DCC	1630	genome.wustl.edu	37	18	50432563	50432563	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	50432563	50432563	C	A	SNP	DCC	NM_005215	human	genbank	57_37b	+1	reviewed	silent	c.562	p.R188	0.991	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors
DDX12	440081	genome.wustl.edu	37	12	9583286	9583286	+	Silent	SNP	A	A	G	rs74439745	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9583286	9583286	A	G	SNP	DDX12	NM_004400	human	genbank	57_37b	-1	validated	silent	c.1140	p.A380	0.732	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	-	
ENSG00000246368	0	genome.wustl.edu	37	1	205274675	205274675	+	RNA	SNP	C	C	T	rs1539695	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205274675	205274675	C	T	SNP	ENSG00000246368	ENST00000499717	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	
GNMT	27232	genome.wustl.edu	37	6	42931381	42931381	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42931381	42931381	T	C	SNP	GNMT	NM_018960	human	genbank	57_37b	+1	reviewed	silent	c.825	p.P275	0.649	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_Methyltransf_12	-	no_errors
HECW2	57520	genome.wustl.edu	37	2	197171902	197171902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197171902	197171902	C	T	SNP	HECW2	NM_020760	human	genbank	57_37b	-1	provisional	missense	c.2641	p.A881T	0.201	NULL	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
IARS	3376	genome.wustl.edu	37	9	95013001	95013001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95013001	95013001	C	T	SNP	IARS	NM_002161	human	genbank	57_37b	-1	reviewed	missense	c.2423	p.R808H	0.300	superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	superfamily_SSF52374,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1	-	no_errors
IFNG	3458	genome.wustl.edu	37	12	68552013	68552013	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	68552013	68552013	A	G	SNP	IFNG	NM_000619	human	genbank	57_37b	-1	reviewed	silent	c.141	p.D47	0.000	HMMPfam_IFN-gamma,superfamily_4-helical cytokines	HMMPfam_IFN-gamma,superfamily_4-helical cytokines	-	no_errors
KIAA0748	9840	genome.wustl.edu	37	12	55357565	55357565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55357565	55357565	G	A	SNP	KIAA0748	NM_001098815	human	genbank	57_37b	-1	validated	missense	c.616	p.R206W	1.000	NULL	NULL	-	no_errors
LOC100286919	0	genome.wustl.edu	37	1	159172110	159172110	+	Missense_Mutation	SNP	C	T	T	rs41313908	byCluster;by1000genomes	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159172110	159172110	C	T	SNP	LOC100286919	XM_002342144	human	genbank	57_37b	-1	model	missense	c.91	p.G31R	0.022	NULL	NULL	-	
LOC100287578	0	genome.wustl.edu	37	10	17271400	17271400	+	Missense_Mutation	SNP	G	G	C	rs3758410	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	17271400	17271400	G	C	SNP	LOC100287578	XM_002342963	human	genbank	57_37b	-1	model	missense	c.1114	p.P372A	0.009	NULL	NULL	-	
MAP3K1	4214	genome.wustl.edu	37	5	56177058	56177059	+	Frame_Shift_Ins	INS	-	-	GTCA	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177058	56177059	-	GTCA	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.2328_2329	p.T778fs	0.997:1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56177978	56177978	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177978	56177978	C	G	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.2951	p.S984*	0.197	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MDGA2	161357	genome.wustl.edu	37	14	47389322	47389322	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	47389322	47389322	G	T	SNP	MDGA2	NM_001113498	human	genbank	57_37b	-1	validated	missense	c.1924	p.P642T	1.000	NULL	PatternScan_MAM_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM	-	no_errors
MGAM	8972	genome.wustl.edu	37	7	141721528	141721528	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141721528	141721528	A	G	SNP	MGAM	NM_004668	human	genbank	57_37b	+1	reviewed	missense	c.701	p.N234S	0.248	NULL	HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151845844	151845844	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151845844	151845844	G	-	DEL	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.13168	p.K4391fs	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[151845118,151846237])	no_errors
NAV2	89797	genome.wustl.edu	37	11	19955784	19955784	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	19955784	19955784	A	G	SNP	NAV2	NM_182964	human	genbank	57_37b	+1	validated	missense	c.1994	p.N665S	0.594	NULL	superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors
NT5C1B	93034	genome.wustl.edu	37	2	18767558	18767558	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	18767558	18767558	A	T	SNP	NT5C1B	NM_001002006	human	genbank	57_37b	-1	validated	missense	c.400	p.S134T	0.019	NULL	HMMPfam_5-nucleotidase	-	no_errors
NUP188	23511	genome.wustl.edu	37	9	131757730	131757730	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131757730	131757730	C	G	SNP	NUP188	NM_015354	human	genbank	57_37b	+1	validated	silent	c.3288	p.S1096	0.319	NULL	HMMPfam_Nup188	-	no_errors
PANK4	55229	genome.wustl.edu	37	1	2452259	2452259	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2452259	2452259	T	C	SNP	PANK4	NM_018216	human	genbank	57_37b	-1	reviewed	missense	c.509	p.Q170R	1.000	HMMPfam_Fumble	HMMPfam_Fumble,superfamily_Hypothetical protein At2g17340,HMMPfam_DUF89	-	no_errors
PCDHA1	56147	genome.wustl.edu	37	5	140167950	140167950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140167950	140167950	C	T	SNP	PCDHA1	NM_018900	human	genbank	57_37b	+1	reviewed	missense	c.2075	p.A692V	0.005	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHGB6	56100	genome.wustl.edu	37	5	140789281	140789281	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140789281	140789281	C	G	SNP	PCDHGB6	NM_018926	human	genbank	57_37b	+1	reviewed	nonsense	c.1512	p.Y504*	0.255	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PRKAR1A	5573	genome.wustl.edu	37	17	66511561	66511561	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66511561	66511561	C	T	SNP	PRKAR1A	NM_002734	human	genbank	57_37b	+1	reviewed	silent	c.21	p.A7	0.983	NULL	HMMPfam_RIIa,HMMSmart_SM00394,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
PTCHD2	57540	genome.wustl.edu	37	1	11589972	11589972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11589972	11589972	G	A	SNP	PTCHD2	NM_020780	human	genbank	57_37b	+1	validated	missense	c.3058	p.V1020I	0.674	HMMPfam_Patched	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
RUNDC2C	440352	genome.wustl.edu	37	16	29302861	29302861	+	RNA	SNP	A	A	G	rs7185056	byCluster;by1000genomes	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29302861	29302861	A	G	SNP	RUNDC2C	NR_002939	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-	
SLAMF7	57823	genome.wustl.edu	37	1	160720169	160720169	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160720169	160720169	T	C	SNP	SLAMF7	NM_021181	human	genbank	57_37b	+1	provisional	missense	c.725	p.V242A	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SLC9A4	389015	genome.wustl.edu	37	2	103141501	103141501	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103141501	103141501	T	-	DEL	SLC9A4	NM_001011552	human	genbank	57_37b	+1	validated	frame_shift_del	c.1837	p.Y613fs	0.999	NULL	HMMPfam_Na_H_Exchanger	(deletion:cds_exon[103141483,103141614])	no_errors
SYNE1	23345	genome.wustl.edu	37	6	152804248	152804248	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152804248	152804248	G	A	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.1322	p.T441M	0.995	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
TMCO6	55374	genome.wustl.edu	37	5	140024286	140024286	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140024286	140024286	T	G	SNP	TMCO6	NM_018502	human	genbank	57_37b	+1	provisional	missense	c.1329	p.S443R	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors
TULP4	56995	genome.wustl.edu	37	6	158922767	158922767	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	158922767	158922767	T	C	SNP	TULP4	NM_020245	human	genbank	57_37b	+1	validated	missense	c.2072	p.I691T	0.769	NULL	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors
VCX3B	425054	genome.wustl.edu	37	X	8434251	8434251	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	8434251	8434251	G	A	SNP	VCX3B	NM_001001888	human	genbank	57_37b	+1	reviewed	missense	c.478	p.V160M	0.002	NULL	NULL	-	no_errors
ZIC5	85416	genome.wustl.edu	37	13	100617886	100617886	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	100617886	100617886	C	T	SNP	ZIC5	NM_033132	human	genbank	57_37b	-1	validated	silent	c.1737	p.P579	0.052	NULL	HMMSmart_SM00355,HMMPfam_zf-C2H2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF341	84905	genome.wustl.edu	37	20	32345105	32345105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18N-01A-11D-A12B-09	TCGA-BH-A18N-11A-43D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	32345105	32345105	C	T	SNP	ZNF341	NM_032819	human	genbank	57_37b	+1	validated	missense	c.893	p.T298M	0.000	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
